Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012819.1 Kokia drynarioides strain JFW-HI SEQ_127832, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4862
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33


Found at i:3040 original size:24 final size:24

Alignment explanation


    Indices: 3013--3068  Score: 112
    Period size: 24  Copynumber: 2.3  Consensus size: 24

       3003 TCCATATTGC

                                    
       3013 TTTCGAGCCTAAAGCAATAGGTGT
          1 TTTCGAGCCTAAAGCAATAGGTGT

                                    
       3037 TTTCGAGCCTAAAGCAATAGGTGT
          1 TTTCGAGCCTAAAGCAATAGGTGT

                    
       3061 TTTCGAGC
          1 TTTCGAGC

       3069 ATTACTCTGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   32  1.00

ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30


Consensus pattern (24 bp):   
TTTCGAGCCTAAAGCAATAGGTGT
Done.