Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012821.1 Kokia drynarioides strain JFW-HI SEQ_127834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2835
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.40
Found at i:921 original size:216 final size:215
Alignment explanation
Indices: 186--2831 Score: 2380
Period size: 216 Copynumber: 12.3 Consensus size: 215
176 TTCTACATTT
* * * * *
186 GGGAAATCGCATCGTTTAGTCTAAATAGTTTTTCATTTTGTAATCAACTTTTCGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * *
251 AAAA--TATTTACATGACAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTAAACTTCTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAC
* * * * * * *
314 TTTTTATC-TGTTCCTTTATAACTTTGGTTCCTTAAACTATTAAAG-GTGATCCATTCCTTTGTG
130 -TTTTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACT-ATCCATTCCTTCGAG
* * * *
377 CAATTTTCCAAGCATTCCATGGTC
192 CCATTTTTCAAACATTCCATGCTC
* * * * * *
401 GAGAAAT-GACATCATTTGGTCTAAATAGGTTATCATTTTCTAAACAAATTTTGGTCGTTGAATT
1 GGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
465 AAAAACTTAATTACGTGAGAATTGTTTTTCTCATGGTTCTTGGACGAACTTTCGTACTTG-CGGA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC-AA
* ** * * ** * * * * * * *
529 ACATTTAATAGCTCTTTTGTAACTTAAGTTGCTGAGAGTACTCAAGACAATCTATTCCGTCGA-C
128 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGC
* *
593 CAATTTTTCGAACTTTCCATGCTC
193 C-ATTTTTCAAACATTCCATGCTC
** * * * * * *
617 GGG-AATCATATCATTCGGTCTAAAAACTTTGTCATTATGTAAACAACTTTTAGTCTTCGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * *
681 AAAACCTATTTACGTGAGAATTGTTTCTCT-TGTGGTTCTAGGACGAACTTACGAACTAGTCGAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTT-CGAACTTGTCAAA
* * *
745 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTAAAGACTATCCATTCCTTTGAGCC
129 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGCC
810 A-TTTTCTAAACATTCCATGCTC
194 ATTTTTC-AAACATTCCATGCTC
*** * * * * * *
832 CAAAAATCGCATCTTTTGGTCTAAATAGTTTGTGATTTTGCAAATAAATTTTGGTCTTTAAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * *
897 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTCGGATGAACTTACGGACTAGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAAC
* * * * *
962 TTTTACAAGTTCTTTTACAACTTTGGTTCCTTAAAGTATTCAAGACTATCCACTCATTTGAGCCA
130 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGCCA
* *
1027 TTTTGCGAACATTCCATGCTC
195 TTTTTCAAACATTCCATGCTC
* * *
1048 GAGAAATCGCATCATTTGGTCTAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* *** * *
1113 AAAACTTTTTTACGTGAGAATTGTTTCTCTCCCAGTTCTTGGATGAACTT--AACTT-TCCAAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGT-CAAAC
* * * ** * *
1175 ATTTACAAGTTCTTTTATAACTTTGGTTCC-TAATAGTATTTAAGAAGATGCATTCCTTC-AACC
130 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA-AGTATTCAAGACTATCCATTCCTTCGAGCC
* *
1238 AATTTTTCGAACATTCCATTCTC
194 -ATTTTTCAAACATTCCATGCTC
* * * * * * * *
1261 GGAAAATTGCATCATTTGCTCAAAATAGTTTGTCATATGGTAAACAACTTTTGGTGTTTGAATTT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * ** ** * *
1326 AAAATTTATTTGCATGAGAATACTTTCTCTCTTGGTTCTTGGATTAACTTTCAAACTTCTCAGAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCA-AA
* * * * * *
1391 ATTTT-CAAGTTCTTTTATTATAACTTTGGTT-CTTGAGAGTATTAAAGA-TGATTCATTCCTTT
129 CTTTTACGAGTTC--TT-TTATAACTTTGGTTCCTT-AAAGTATTCAAGACT-ATCCATTCCTTC
* *
1453 GTGCAATTTTTCAAACATTCCATGCTC
189 GAGCCATTTTTCAAACATTCCATGCTC
*
1480 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACCTTTCGGTCTTTGAATT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATT
* * * * *
1544 AAAAACTTAGTTACATGAGGATTTTTTCTCTCTTGGTTCTTGGACGAACTTCAGAGCTTGTCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAA
* * * * * * * *
1609 -TATTTACCAGTTCTTTTATAACTTCGGTTTCTGAGAGCATTAAAGA-TGACCCATTCCTTCGA-
129 CT-TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACT-ATCCATTCCTTCGAG
* *
1671 CCAATTTTTCGAGCATTCCATGCTC
192 CC-ATTTTTCAAACATTCCATGCTC
*** * *
1696 GGGAAATCGCATCATTCATTCTAAAT-GTTTTTTTAATTTTGTAAACAACTTTTGGTCTTTG-AT
1 GGGAAATCGCATCATTTGGTCTAAATAG--TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
1759 TGAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACTTCCGAGCTTGTCAA
64 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAA
* * * * * *
1824 ACATTTACGAGTTCTTCTATAACTTCGGTTCCTTAAATTATTCAAGCCGATCC-TATCCTTCGA-
128 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCAT-TCCTTCGAG
* *
1887 CCAGTTTTTCGAACATTCAATGCTC
192 CCA-TTTTTCAAACATTCCATGCTC
* * * ** *
1912 TGAAAATCGCATTATTTGGTCTAAATAGTTTGTCATTTCATAAACAACTTTTGCTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
1977 ACGAA-TTATTTACGTGAGAACTGTTTCTCTCTTTGTTCTTGG-CTGAACTTTCGAACTTGTCAA
66 A-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAAC-TTCGAACTTGTCAA
* * ** * *
2040 CCTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGC
128 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGC
* * * * *
2105 AATTTTCCAAACATTCTACGCTT
193 CATTTTTCAAACATTCCATGCTC
* * * * * *
2128 GGGAAATCGCAACGTTCGGTCTAAATAGTTTTTCATTTTGTAATCAACTTTTCGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
2193 AAAA--TATTTACATGACAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAC
* * * * * * *
2256 TTTTTATC-AGTTCCTTTATAACTTCGGTTCCTTAAACTATTAAAG-GTGATCCATTCCTTTGTG
130 -TTTTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACT-ATCCATTCCTTCGAG
** *
2319 TAATTTTTCAAGCATTCCATGCTC
192 CCATTTTTCAAACATTCCATGCTC
* * * * * * * *
2343 GAGAAAT-GATATCATTTGGTCTAAATAGGTTATCATTCTCTAAACAATTTTTGGTCTTCGAATT
1 GGGAAATCG-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
2407 AAAAACTTATTTACGTGAGAATTGTTTCTCTCATGGTTTTTGGACGAAATTCCGTACTT-CCGGA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTC-AA
* ** * * * ** * * *
2471 TCTTTTAATAGCTCTTCTGTAACTTAAGTTCCTGACAGTATTCAAGACGATCCATTCCTTCGA-C
128 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGC
*
2535 CAATTTTTCAAACTTTCCATGCTC
193 C-ATTTTTCAAACATTCCATGCTC
* * * * * * *
2559 GGG-AATCGTATCATTCGGTCTAAAAACTTTGTCATTATGTAAACAACTTTTAGTCTTCGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * *
2623 AAAACCTATTTACGTGAGAATTGTTTCTCT-TGTGGTTCTAGGATGAACTTATGAACTAGTCGAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTT-CGAACTTGTCAAA
*
2687 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACTATCCATTCCTTCGA-CC
129 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGCC
* *
2751 AATTTTTCGAACTTTCCATGCTC
194 -ATTTTTCAAACATTCCATGCTC
* * * * * * *
2774 CGGAAATCGCATCATTCGGTCTAAAAACTTTGTCATTATGTGAACAACTTTTAGTCTT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
2832 CGAA
Statistics
Matches: 1979, Mismatches: 382, Indels: 139
0.79 0.15 0.06
Matches are distributed among these distances:
212 7 0.00
213 168 0.08
214 58 0.03
215 548 0.28
216 876 0.44
217 140 0.07
218 19 0.01
219 161 0.08
220 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAACT
TTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTCGAGCCAT
TTTTCAAACATTCCATGCTC
Found at i:1488 original size:432 final size:427
Alignment explanation
Indices: 186--2831 Score: 2395
Period size: 431 Copynumber: 6.1 Consensus size: 427
176 TTCTACATTT
* * * * * *
186 GGGAAATCGCATCGTTTAGTCTAAATAGTTTTTCATTTTGTAATCAACTTTTCGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
251 AAAA--TATTTACATGACAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTAAACTTCTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC--AACTT-TCAAAC
* * * * ** * **
314 TTTTTATC-TGTTCCTTTATAACTTTGGTTCCTTAAACTATTAAAGGTGATCCATTCCTTTGTGC
128 -TTTTA-CAAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTAAAGACGATCCATTCCTTCGACC
* * * * * * *
378 AATTTTCCAAGCATTCCATGGTC-GAGAAAT-GACATCATTTGGTCTAAATAGGTTATCATTTTC
190 AATTTTTCAAACATTCCATGCTCGGA-AAATCG-CATCATTCGGTCTAAATAGTTTGTCATTTTG
* * * * *
441 TAAACAAATTTTGGTCGTTGAATTAAAAACTTAATTACGTGAGAATTGTTTTTCTCATGGTTCTT
253 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * * ** * * * *
506 GGACGAACTTTCGTACTTG-CGGAACATTTAATAGCTCTTTTGTAACTTAAGTTGCTGAGAGTAC
318 GGATGAACTTTCGAACTTGTC-AAACTTTTCA-AGTTCTTTTATAACTTTGGTTCCTTAAAGTAT
** * * * * *
570 TCAAGACAATCTATTCCGTCGACCAATTTTTCGAACTTTCCATGCTC
381 TCAAGATGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC
** * * * *
617 GGG-AATCATATCATTCGGTCTAAA-AACTTTGTCATTATGTAAACAACTTTTAGTCTTCGAATT
1 GGGAAATCGCATCATTTGGTCTAAATAA-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * *
680 AAAAACCTATTTACGTGAGAATTGTTTCTCT-TGTGGTTCTAGGACGAACTTACGAACTAGTCGA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTT-C-AACT-TTCAA
* * * *
744 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTCAAAGTATTAAAGACTATCCATTCCTTTGAGC
126 ACTTTTACAAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTAAAGACGATCCATTCCTTCGA-C
** * * *
809 C-A-TTTTCTAAACATTCCATGCTCCAAAAATCGCATCTTTTGGTCTAAATAGTTTGTGATTTTG
189 CAATTTTTC-AAACATTCCATGCTCGGAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTG
* * * * * *
872 CAAATAAATTTTGGTCTTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTC
253 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
937 GGATGAACTTACGGACTAGTCAAACTTTTACAAGTTCTTTTACAACTTTGGTTCCTTAAAGTATT
318 GGATGAACTTTCGAACTTGTCAAACTTTT-CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * *
1002 CAAGACT-ATCCACTCATTTGAGCCATTTTGCGAACATTCCATGCTC
382 CAAGA-TGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC
* *
1048 GAGAAATCGCATCATTTGGTCTAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* *** * **
1113 AAAACTTTTTTACGTGAGAATTGTTTCTCTCCCAGTTCTTGGATGAACTT-AACTTTCCAAAAAT
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAACTTT-CAAACTT
* * * * *
1177 TTACAAGTTCTTTTATAACTTTGGTTCCTAATAGTATTTAAGAAGATGCATTCCTTCAACCAATT
130 TTACAAGTTCTTTTATAACTTCGGTTCCTAA-AGTATTAAAGACGATCCATTCCTTCGACCAATT
* * * * * * * *
1242 TTTCGAACATTCCATTCTCGGAAAATTGCATCATTTGCTCAAAATAGTTTGTCATATGGTAAACA
194 TTTCAAACATTCCATGCTCGGAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * * ** *
1307 ACTTTTGGTGTTTGAATTTAAAATTTATTTGCATGAGAATACTTTCTCTCTTGGTTCTTGGATTA
259 ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
* * * * *
1372 ACTTTCAAACTTCTCAGAAATTTTCAAGTTCTTTTATTATAACTTTGGTT-CTTGAGAGTATTAA
324 ACTTTCGAACTTGTCA-AACTTTTCAAGTTC--TT-TTATAACTTTGGTTCCTT-AAAGTATTCA
* * *
1436 AGATGATTCATTCCTTTGTGCAATTTTTCAAACATTCCATGCTC
384 AGATGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC
* *
1480 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AACCTTTCGGTCTTTGAATT
1 GGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATT
* * * *
1544 AAAAACTTAGTTACATGAGGATTTTTTCTCTCTTGGTTCTTGGACGAACTTCAGAGCTTGTCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCA-A-CTT-TCAAA
* * * * * *
1609 -TATTTACCAGTTCTTTTATAACTTCGGTTTCTGAGAGCATTAAAGATGACCCATTCCTTCGACC
127 CT-TTTACAAGTTCTTTTATAACTTCGGTTCCT-AAAGTATTAAAGACGATCCATTCCTTCGACC
* * * ** * *
1673 AATTTTTCGAGCATTCCATGCTCGGGAAATCGCATCATTCATTCTAAAT-GTTTTTTTAATTTTG
190 AATTTTTCAAACATTCCATGCTCGGAAAATCGCATCATTCGGTCTAAATAG--TTTGTCATTTTG
* *
1737 TAAACAACTTTTGGTCTTTG-ATTGAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTT
253 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * *
1801 GGATGAACTTCCGAGCTTGTCAAACATTTACGAGTTCTTCTATAACTTCGGTTCCTTAAATTATT
318 GGATGAACTTTCGAACTTGTCAAAC-TTTTCAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
** * * * *
1866 CAAGCCGATCC-TATCCTTCGACCAGTTTTTCGAACATTCAATGCTC
382 CAAGATGATCCAT-TCCTTTGAGCAATTTTTCGAACATTCCATGCTC
* * * * ** *
1912 TGAAAATCGCATTATTTGGTCTAAATAGTTTGTCATTTCATAAACAACTTTTGCTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * *
1977 ACGAA-TTATTTACGTGAGAACTGTTTCTCTCTTTGTTCTTGG-CTGAACTTTCGAACTTGTCAA
66 A-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GAAC-TTC-AACTT-TCAA
* ** * * * *
2040 CCTTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGC
126 ACTTTTACAAGTTCTTTTATAACTTCGGTTCC-TAAAGTATTAAAGACGATCCATTCCTTCGACC
* * * * * * * *
2105 AATTTTCCAAACATTCTACGCTTGGGAAATCGCAACGTTCGGTCTAAATAGTTTTTCATTTTGTA
190 AATTTTTCAAACATTCCATGCTCGGAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTA
* * * *
2170 ATCAACTTTTCGTCTTTGAATTAAAAA--TATTTACATGACAATTGTTTCTCTCTTGGTTCTTGG
255 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * *
2233 ACGAAC-TTCTAAACTTGTCAAACTTTTTATCAGTTCCTTTATAACTTCGGTTCCTTAAACTATT
320 ATGAACTTTC-GAACTTGTCAAACTTTTCA--AGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * *
2297 AAAGGTGATCCATTCCTTTGTGTAATTTTTC-AAGCATTCCATGCTC
382 CAAGATGATCCATTCCTTTGAGCAATTTTTCGAA-CATTCCATGCTC
* * ** * * * * *
2343 GAGAAAT-GATATCATTTGGTCTAAATAGGTTATCATTCTCTAAACAATTTTTGGTCTTCGAATT
1 GGGAAATCG-CATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * *
2407 AAAAACTTATTTACGTGAGAATTGTTTCTCTCATGGTTTTTGGACGAAATTCCGTACTTCCGGAT
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-C-AACTTTC-AAA
* * * ** * *
2472 CTTTTA-ATAGCTCTTCTGTAACTTAAGTTCCTGACAGTATTCAAGACGATCCATTCCTTCGACC
127 CTTTTACA-AGTTCTTTTATAACTTCGGTTCCT-AAAGTATTAAAGACGATCCATTCCTTCGACC
* * * * * *
2536 AATTTTTCAAACTTTCCATGCTCGG-GAATCGTATCATTCGGTCTAAAAACTTTGTCATTATGTA
190 AATTTTTCAAACATTCCATGCTCGGAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTA
* * * *
2600 AACAACTTTTAGTCTTCGAATTAAAAACCTATTTACGTGAGAATTGTTTCTCT-TGTGGTTCTAG
255 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTG
* * * *
2664 GATGAACTTAT-GAACTAGTCGAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAAT
319 GATGAACTT-TCGAACTTGTCAAACTTTT-CAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * *
2728 CAAGACT-ATCCATTCCTTCGACCAATTTTTCGAACTTTCCATGCTC
382 CAAGA-TGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC
* * * * *
2774 CGGAAATCGCATCATTCGGTCTAAA-AACTTTGTCATTATGTGAACAACTTTTAGTCTT
1 GGGAAATCGCATCATTTGGTCTAAATAA-TTTGTCATTTTGTAAACAACTTTTGGTCTT
2832 CGAA
Statistics
Matches: 1802, Mismatches: 342, Indels: 142
0.79 0.15 0.06
Matches are distributed among these distances:
428 5 0.00
429 183 0.10
430 183 0.10
431 610 0.34
432 604 0.34
433 21 0.01
434 6 0.00
435 161 0.09
436 29 0.02
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.40
Consensus pattern (427 bp):
GGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAACTTTCAAACTTT
TACAAGTTCTTTTATAACTTCGGTTCCTAAAGTATTAAAGACGATCCATTCCTTCGACCAATTTT
TCAAACATTCCATGCTCGGAAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
TTTCGAACTTGTCAAACTTTTCAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGAT
CCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC
Done.