Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012823.1 Kokia drynarioides strain JFW-HI SEQ_127836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22622
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Found at i:3149 original size:57 final size:59
Alignment explanation
Indices: 3047--3169 Score: 151
Period size: 57 Copynumber: 2.1 Consensus size: 59
3037 AACATAAATT
** *
3047 CATTTTCATTTTCATTTTGGAGAAAGTCAGAATAATTTACAAATGA-TTC-CATTTCTC
1 CATTTTCATTTTCATTTTGGAGAAAACCAGAATAATTTACAAATGATTTCTCATTTATC
* * * * * *
3104 CATTTTCATTTTCGTTTTGGAGAAAACCATAATCATTTCCCAATGATTTCTCGTTTATC
1 CATTTTCATTTTCATTTTGGAGAAAACCAGAATAATTTACAAATGATTTCTCATTTATC
3163 CATTTTC
1 CATTTTC
3170 GCCATTTCTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 39 0.71
58 3 0.05
59 13 0.24
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.44
Consensus pattern (59 bp):
CATTTTCATTTTCATTTTGGAGAAAACCAGAATAATTTACAAATGATTTCTCATTTATC
Found at i:4343 original size:43 final size:43
Alignment explanation
Indices: 4171--4395 Score: 245
Period size: 43 Copynumber: 5.3 Consensus size: 43
4161 TGCTAAAGAT
* * *
4171 AACGTCGCTAAAGAACATGGTCTTTAGCAGCGCCTTTCACACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCACACA
* * *
4214 AACGCCGCTAAAGAACATGGTCTTTAGCGGCTCGTTTCACATA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCACACA
* * *
4257 AACGCCGCTAAAGAACATGGTCTTTAGCGGCACTTTCCCCACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCACACA
* * *
4300 AACGCCGCTAAAGAACATGGTCTTTAACGGTGCTTTTCTCACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCACACA
** * * * * ** *
4343 AACATCGTTATAGAACATGTTCTTTAGTGGCATTTTTC-TACA
1 AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCACACA
*
4385 AACACCGCTAA
1 AACGCCGCTAA
4396 CAGTAATAGA
Statistics
Matches: 153, Mismatches: 29, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
42 11 0.07
43 142 0.93
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
AACGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTTCACACA
Found at i:4824 original size:54 final size:54
Alignment explanation
Indices: 4669--4814 Score: 256
Period size: 54 Copynumber: 2.7 Consensus size: 54
4659 TCATCATATT
* *
4669 TTGAAGTTGTAGCTGCAGTTCGTCATAATTTCTTTGAGACTCTGCTTCCTTGGC
1 TTGAAATTGTAGCTGAAGTTCGTCATAATTTCTTTGAGACTCTGCTTCCTTGGC
4723 TTGAAATTGTAGCTGAAGTTCGTCATAATTTCTTTGAGACTCTGCTTCCTTGGC
1 TTGAAATTGTAGCTGAAGTTCGTCATAATTTCTTTGAGACTCTGCTTCCTTGGC
* *
4777 TTGAAATTGTAGCTGAAGTTCATCATATTTTCTTTGAG
1 TTGAAATTGTAGCTGAAGTTCGTCATAATTTCTTTGAG
4815 CCTTGGCTTC
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 88 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.42
Consensus pattern (54 bp):
TTGAAATTGTAGCTGAAGTTCGTCATAATTTCTTTGAGACTCTGCTTCCTTGGC
Found at i:9713 original size:14 final size:14
Alignment explanation
Indices: 9694--9739 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
9684 AACTTACAAG
*
9694 GAACAAAGAAGGAT
1 GAACAAACAAGGAT
*
9708 GAACAAACCA-G--
1 GAACAAACAAGGAT
9719 GAACAAACAAGGAT
1 GAACAAACAAGGAT
9733 GAACAAA
1 GAACAAA
9740 TCCAAACCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
11 9 0.35
12 1 0.04
13 1 0.04
14 15 0.58
ACGTcount: A:0.59, C:0.15, G:0.22, T:0.04
Consensus pattern (14 bp):
GAACAAACAAGGAT
Found at i:9720 original size:25 final size:25
Alignment explanation
Indices: 9692--9739 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
9682 GAAACTTACA
*
9692 AGGAACAAAGAAGGATGAACAAACC
1 AGGAACAAACAAGGATGAACAAACC
9717 AGGAACAAACAAGGATGAACAAA
1 AGGAACAAACAAGGATGAACAAA
9740 TCCAAACCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.58, C:0.15, G:0.23, T:0.04
Consensus pattern (25 bp):
AGGAACAAACAAGGATGAACAAACC
Found at i:10643 original size:43 final size:40
Alignment explanation
Indices: 10575--10677 Score: 107
Period size: 43 Copynumber: 2.5 Consensus size: 40
10565 GGACCTTTTG
* **
10575 CGGCGTTTTCCCAAAAAACACCACTATTGCACTATACCTATTA
1 CGGCGTTTTCCC-ATAAACGTCACTATTG--CTATACCTATTA
* *
10618 CGGCGTTTTTCCCATAAACGTCACTATTGCTTTACCTTTTA
1 CGGCG-TTTTCCCATAAACGTCACTATTGCTATACCTATTA
* *
10659 TGGCGTTTTCTCATAAACG
1 CGGCGTTTTCCCATAAACG
10678 CCGTTATTGC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
40 13 0.25
41 14 0.27
43 18 0.35
44 7 0.13
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (40 bp):
CGGCGTTTTCCCATAAACGTCACTATTGCTATACCTATTA
Found at i:10677 original size:40 final size:41
Alignment explanation
Indices: 10536--10760 Score: 184
Period size: 41 Copynumber: 5.4 Consensus size: 41
10526 CTTTAGCAGT
* * * * *
10536 GTTTTTCTCATTAACGCCACTAATACTCTGGACCTTTTGCGGC
1 GTTTTTCTCATAAACGCCACTATTGCT-T-TACCTTTTACGGC
* * * * *
10579 G-TTTTCCCAAAAAACACCACTATTGCACTATACCTATTACGGC
1 GTTTTTCTC-ATAAACGCCACTATTG--CTTTACCTTTTACGGC
* * *
10622 GTTTTTCCCATAAACGTCACTATTGCTTTACCTTTTATGGC
1 GTTTTTCTCATAAACGCCACTATTGCTTTACCTTTTACGGC
** * *
10663 G-TTTTCTCATAAACGCCGTTATTGCTTTACCTTTTGCGAC
1 GTTTTTCTCATAAACGCCACTATTGCTTTACCTTTTACGGC
* * ***
10703 ATTTTTCTCATAAATGCCACTATTGCTTTACCTTTTGTAGC
1 GTTTTTCTCATAAACGCCACTATTGCTTTACCTTTTACGGC
*
10744 GTTTTTTTCATAAACGC
1 GTTTTTCTCATAAACGC
10761 TGCTATTACT
Statistics
Matches: 144, Mismatches: 33, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
40 32 0.22
41 61 0.42
42 6 0.04
43 36 0.25
44 7 0.05
45 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.40
Consensus pattern (41 bp):
GTTTTTCTCATAAACGCCACTATTGCTTTACCTTTTACGGC
Found at i:10767 original size:41 final size:41
Alignment explanation
Indices: 10620--10776 Score: 165
Period size: 41 Copynumber: 3.9 Consensus size: 41
10610 ACCTATTACG
* * * * *
10620 GCGTTTTTCCCATAAACGTCACTATTGCTTTACCTTTTATG
1 GCGTTTTTCTCATAAACGCCGCTATTGCTTTACCTTTTGTA
* *
10661 GCG-TTTTCTCATAAACGCCGTTATTGCTTTACCTTTTG-C
1 GCGTTTTTCTCATAAACGCCGCTATTGCTTTACCTTTTGTA
* * *
10700 GACATTTTTCTCATAAATGCCACTATTGCTTTACCTTTTGTA
1 G-CGTTTTTCTCATAAACGCCGCTATTGCTTTACCTTTTGTA
* * * *
10742 GCGTTTTTTTCATAAACGCTGCTATTACTTAACCT
1 GCGTTTTTCTCATAAACGCCGCTATTGCTTTACCT
10777 CTAATTTTTT
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 31 0.33
41 62 0.65
42 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (41 bp):
GCGTTTTTCTCATAAACGCCGCTATTGCTTTACCTTTTGTA
Found at i:12262 original size:41 final size:41
Alignment explanation
Indices: 12208--12346 Score: 174
Period size: 41 Copynumber: 3.4 Consensus size: 41
12198 AAAAACACCG
*
12208 CTAATGCTTTGACCTTTAGCTGCGTTTTCTCATAAACGCCA
1 CTAATGCTTTGACCTTTAGCTGTGTTTTCTCATAAACGCCA
* * * * *
12249 CTAATGCTCTGACCTTTAGCGGTGTTTTTTCTTAAACGCCG
1 CTAATGCTTTGACCTTTAGCTGTGTTTTCTCATAAACGCCA
* *
12290 CTAATGCTTTGACCTTTAGCTGTGTTTTC-CAATAAACGTCG
1 CTAATGCTTTGACCTTTAGCTGTGTTTTCTC-ATAAACGCCA
*
12331 CTATTGCTTT-ACCTTT
1 CTAATGCTTTGACCTTT
12347 TGCGACGTTT
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 7 0.08
41 78 0.92
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.40
Consensus pattern (41 bp):
CTAATGCTTTGACCTTTAGCTGTGTTTTCTCATAAACGCCA
Found at i:15282 original size:21 final size:21
Alignment explanation
Indices: 15256--15301 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
15246 TTTTTCAACC
*
15256 ACATAGTTTTTCAACCGTGTT
1 ACATAGTTTTTCAACCATGTT
15277 ACATAGTTTTTCAACCATGTT
1 ACATAGTTTTTCAACCATGTT
15298 ACAT
1 ACAT
15302 TCGGGGGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (21 bp):
ACATAGTTTTTCAACCATGTT
Found at i:17719 original size:59 final size:59
Alignment explanation
Indices: 17571--17917 Score: 360
Period size: 59 Copynumber: 5.9 Consensus size: 59
17561 AGGTTTGAGG
** *
17571 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAA-TTAAAAA
1 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
* ** ** * * * *
17629 TAAAAAATAAAATTTTTAAACATCCGAGGGTACAATGATAATTTTTGGAAAGTTTGAGA
1 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
* * * * *
17688 TCAAAAATGGAATTTTTTGACATTTGGGGGTAAATTGGTAATTTTTTGG-AAGTTCGAGG
1 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAA-TTTTTGGAAAGTTCGAGA
* * *
17747 TC-AAAATGGAATTTTTGGACATTTG-GGGTAAAATGGTAATTTTTGGAAGGTTCGGGA
1 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
* * * * * * * *
17804 TTAAAAATGGAATATTTGGTCATCCGAAGGTAAAATGGTAATTTTTGGAAGGTTCGGGG
1 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
* ** * *
17863 TTAAAAATGGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTC
1 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAAGTTC
17918 AAGGACCTCT
Statistics
Matches: 239, Mismatches: 45, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
56 7 0.03
57 21 0.09
58 84 0.35
59 120 0.50
60 7 0.03
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (59 bp):
TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
Found at i:17836 original size:116 final size:118
Alignment explanation
Indices: 17571--17917 Score: 369
Period size: 117 Copynumber: 3.0 Consensus size: 118
17561 AGGTTTGAGG
* * * * ** ** *
17571 TCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAA-ATTAAAAATAAAAA
1 TCAAAAATGGAATATTTGGACATCCGAAGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTTAAAA
** ** * * * *
17635 ATAAAATTTTTAAACATCCGAGGGTACAATGATAATTTTTGGAAAGTTTGAGA
66 ATGGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
* * ** ** * *
17688 TCAAAAATGGAATTTTTTGACATTTGGGGGTAAATTGGTAATTTTTTGGAA-GTTCGAGG-TCAA
1 TCAAAAATGGAATATTTGGACATCCGAAGGTAAAATGGTAA-TTTTTGGAAGGTTCGAGGTTAAA
** * *
17751 AATGGAATTTTTGGACATTT-GGGGTAAAATGGTAATTTTTGGAAGGTTCGGGA
65 AATGGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
* * *
17804 TTAAAAATGGAATATTTGGTCATCCGAAGGTAAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAA
1 TCAAAAATGGAATATTTGGACATCCGAAGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTTAAAA
17869 ATGGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTC
66 ATGGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTC
17918 AAGGACCTCT
Statistics
Matches: 189, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
115 9 0.05
116 66 0.35
117 74 0.39
118 40 0.21
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (118 bp):
TCAAAAATGGAATATTTGGACATCCGAAGGTAAAATGGTAATTTTTGGAAGGTTCGAGGTTAAAA
ATGGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTCGAGA
Found at i:17848 original size:175 final size:176
Alignment explanation
Indices: 17567--17917 Score: 447
Period size: 175 Copynumber: 2.0 Consensus size: 176
17557 TCAAAGGTTT
17567 GAGGTCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAATTAAAAATAA
1 GAGGTCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAATTAAAAATAA
* * * *
17632 AAAATAAAATTTTTAAACATCCGAGGGTACAATGATAATTTTTGGAAAGTTTGAGATCAAAAATG
66 AAAATAAAATATTTAAACATCCGAAGGTAAAATGATAATTTTTGGAAAGTTCGAGATCAAAAATG
** *
17697 GAATTTTTTGACATTTGGGGGTAAATTGGTAATTTTTTGG-AAGTTC
131 GAATTTTTAAACATTTGGGGGTAAAATGGTAA-TTTTTGGAAAGTTC
* * **** *
17743 GAGGTC-AAAATGGAATTTTTGGACATTTG-GGGTAAAATGGTAATTTTTGGAAGGTTCGGGATT
1 GAGGTCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAA-ATTAAAAATA
** *** * * * * *
17806 AAAAATGGAATATTTGGTCATCCGAAGGTAAAATGGTAATTTTTGGAAGGTTCGGGGTTAAAAAT
65 AAAAATAAAATATTTAAACATCCGAAGGTAAAATGATAATTTTTGGAAAGTTCGAGATCAAAAAT
17871 GGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTC
130 GGAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTC
17918 AAGGACCTCT
Statistics
Matches: 149, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
174 30 0.20
175 113 0.76
176 6 0.04
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.34
Consensus pattern (176 bp):
GAGGTCAAAAATGGAATTTTTGGACATCTGAGGGTAAAATGGTAATTTTTGGAAATTAAAAATAA
AAAATAAAATATTTAAACATCCGAAGGTAAAATGATAATTTTTGGAAAGTTCGAGATCAAAAATG
GAATTTTTAAACATTTGGGGGTAAAATGGTAATTTTTGGAAAGTTC
Found at i:17878 original size:29 final size:27
Alignment explanation
Indices: 17691--17917 Score: 143
Period size: 28 Copynumber: 7.8 Consensus size: 27
17681 TTTGAGATCA
* * *
17691 AAAATGGAATTTTTTGACATTTGGGGGT
1 AAAATGGAATTTTTGGA-AGTTCGGGGT
* *
17719 AAATTGGTAATTTTTTGGAAGTTCGAGGT
1 AAAATGG-AA-TTTTTGGAAGTTCGGGGT
*
17748 CAAAATGGAATTTTTGGACA-TTTGGGGT
1 -AAAATGGAATTTTTGGA-AGTTCGGGGT
*
17776 AAAATGGTAATTTTTGGAAGGTTCGGGATT
1 AAAATGG-AATTTTTGGAA-GTTCGGG-GT
* * * *
17806 AAAAATGGAATATTTGGTCA-TCCGAAGGT
1 -AAAATGGAATTTTTGG-AAGTTCG-GGGT
17835 AAAATGGTAATTTTTGGAAGGTTCGGGGTT
1 AAAATGG-AATTTTTGGAA-GTTCGGGG-T
** * *
17865 AAAAATGGAATTTTTAAACATTTGGGGGT
1 -AAAATGGAATTTTTGGA-AGTTCGGGGT
17894 AAAATGGTAATTTTTGGAAAGTTC
1 AAAATGG-AATTTTTGG-AAGTTC
17918 AAGGACCTCT
Statistics
Matches: 153, Mismatches: 27, Indels: 37
0.71 0.12 0.17
Matches are distributed among these distances:
27 8 0.05
28 45 0.29
29 42 0.27
30 42 0.27
31 16 0.10
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.36
Consensus pattern (27 bp):
AAAATGGAATTTTTGGAAGTTCGGGGT
Found at i:18951 original size:3 final size:3
Alignment explanation
Indices: 18936--18965 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
18926 TTTCTCTTTG
*
18936 TTA TTA ATA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
18966 AAATTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:19688 original size:13 final size:13
Alignment explanation
Indices: 19670--19694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19660 TTGGGCCCAA
19670 TTTGTAATTGGAC
1 TTTGTAATTGGAC
19683 TTTGTAATTGGA
1 TTTGTAATTGGA
19695 TATTATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.48
Consensus pattern (13 bp):
TTTGTAATTGGAC
Found at i:19717 original size:6 final size:6
Alignment explanation
Indices: 19706--19760 Score: 55
Period size: 6 Copynumber: 9.7 Consensus size: 6
19696 ATTATTTAAA
* *
19706 TAAATT TAAA-T TAAATT TAAA-A TAAATT TAAATT TCCAA-- TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT T-AAATT TAAATT
19751 TAAATT TAAA
1 TAAATT TAAA
19761 ATAAACTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
4 2 0.05
5 10 0.25
6 26 0.65
7 2 0.05
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (6 bp):
TAAATT
Found at i:19722 original size:11 final size:11
Alignment explanation
Indices: 19699--19739 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
19689 ATTGGATATT
19699 ATTTAAA-TAA
1 ATTTAAATTAA
19709 ATTTAAATTAA
1 ATTTAAATTAA
*
19720 ATTTAAAATAA
1 ATTTAAATTAA
19731 ATTTAAATT
1 ATTTAAATT
19740 TCCAATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTTAAATTAA
Found at i:19731 original size:22 final size:21
Alignment explanation
Indices: 19699--19739 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
19689 ATTGGATATT
19699 ATTTAAATAAATTTAAATTAA
1 ATTTAAATAAATTTAAATTAA
19720 ATTTAAAATAAATTTAAATT
1 ATTT-AAATAAATTTAAATT
19740 TCCAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTTAAATAAATTTAAATTAA
Found at i:19736 original size:17 final size:17
Alignment explanation
Indices: 19712--19784 Score: 94
Period size: 17 Copynumber: 4.4 Consensus size: 17
19702 TAAATAAATT
19712 TAAA-TTAAATTTAAAA
1 TAAATTTAAATTTAAAA
**
19728 TAAATTTAAATTTCCAA
1 TAAATTTAAATTTAAAA
19745 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* **
19762 TAAACTTATTTTTAAAA
1 TAAATTTAAATTTAAAA
19779 TAAATT
1 TAAATT
19785 GGGCTTCAAC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
16 4 0.08
17 44 0.92
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:20359 original size:39 final size:38
Alignment explanation
Indices: 20305--20600 Score: 170
Period size: 39 Copynumber: 7.6 Consensus size: 38
20295 GCTGATGATG
* *
20305 ATCTGCCTCAAGCTCGAGGTAAGAGATCGAATAACTGCA
1 ATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGA-TGCA
* * ** **
20344 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTG
1 ATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGA-TGCA
* * * * * *
20383 ATCTACCTCAGGCTTGAGGTAAAAGATCGAATGGTGTCA
1 ATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGATG-CA
* *
20422 ATCTGCCCCAGGCTCGGGGTAAGAGATTTGCTG-ATGATG--
1 ATCTGCCCCAAGCTCGAGGTAAGAGA--T-C-GAATGATGCA
* **
20461 ATCTGCCCCAAGCTCTG-GGTAAGAGATCGAATGGCTATA
1 ATCTGCCCCAAGCTC-GAGGTAAGAGATCGAAT-GATGCA
* * ** **
20500 AT-TCACCCCAAGCTCGAGGTAAGAGATTGGTTGATGGTG
1 ATCT-GCCCCAAGCTCGAGGTAAGAGATCGAATGAT-GCA
* * * *
20539 ATCTGCCCCAAGCTCAAGGTAAAAGATCAAACAGATGCA
1 ATCTGCCCCAAGCTCGAGGTAAGAGATCGAA-TGATGCA
* *
20578 ATCTGCCCCAAGCTTGGGGTAAG
1 ATCTGCCCCAAGCTCGAGGTAAG
20601 GGATTGGTTG
Statistics
Matches: 191, Mismatches: 51, Indels: 30
0.70 0.19 0.11
Matches are distributed among these distances:
35 1 0.01
36 3 0.02
37 3 0.02
38 6 0.03
39 165 0.86
40 5 0.03
41 1 0.01
42 6 0.03
43 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (38 bp):
ATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGATGCA
Found at i:20392 original size:78 final size:78
Alignment explanation
Indices: 20261--20721 Score: 369
Period size: 78 Copynumber: 5.9 Consensus size: 78
20251 ACTTCAAATG
* * * * * *
20261 ACTGCAATCTGCCCCATGAT-TGGGAAAGACATTGGCTGA-TGATGATCTGCCTCAAGCTCGAGG
1 ACTGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTG-TGATCTGCCCCAAGCTCGAGG
*
20324 TAAGAGATCGAATA
65 TAAAAGATCGAATA
* * * *
20338 ACTGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTACCTCAGGCTTGAGGT
1 ACTGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTGCCCCAAGCTCGAGGT
20403 AAAAGATCGAAT-
66 AAAAGATCGAATA
** * *
20415 GGTGTCAATCTGCCCCAGGCTCGGGGTAAGAGATTTGCTGA-TGATGATCTGCCCCAAGCTCTG-
1 ACTG-CAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTG-TGATCTGCCCCAAGCTC-GA
* *
20478 GGTAAGAGATCGAATG
63 GGTAAAAGATCGAATA
* ** * * * * *
20494 GCTATAAT-TCACCCCAAGCTCGAGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTCAAGG
1 ACTGCAATCT-GCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTGCCCCAAGCTCGAGG
* *
20558 TAAAAGATCAAACA
65 TAAAAGATCGAATA
* * * * * ** * * *
20572 GA-TGCAATCTGCCCCAAGCTTGGGGTAAGGGATTGGTTGATGGTGATTTGCCTTAGGTTCGGGG
1 -ACTGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTGCCCCAAGCTCGAGG
*
20636 TAAAAGATCGAATG
65 TAAAAGATCGAATA
** * * * * * * * * *
20650 GTTGTAATTTACCCTAGGCTCGGGGTAAGAGATTGGCTTATAGTGATCTGCCCCAGGCTCGGGGT
1 ACTGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTGCCCCAAGCTCGAGGT
*
20715 AAGAGAT
66 AAAAGAT
20722 TGGCTTATAG
Statistics
Matches: 307, Mismatches: 65, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
77 23 0.07
78 277 0.90
79 7 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (78 bp):
ACTGCAATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTGCCCCAAGCTCGAGGT
AAAAGATCGAATA
Found at i:20580 original size:156 final size:153
Alignment explanation
Indices: 20254--20709 Score: 466
Period size: 156 Copynumber: 2.9 Consensus size: 153
20244 CTTTATCACT
* * * * * *
20254 TCAAATGACTGCAATCTGCCCCATGATTGGGAAAGACATTGGCTGATGATGATCTGCCTCAAGCT
1 TCAAAAGA-TGCAATCTGCCCCAAGCTGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAAGCT
** * * * *
20319 CGAGGTAAGAGATCGAATAACTGCAA-TCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTG
65 CG-GGTAAGAGATCGAATGGCTGTAATTC-ACCCCAAGCTCGGGGTAAGAGATTGGTTGATAGTG
* * **
20383 ATCTACCTCAGGCTTGAGGTAAAAGA
128 ATCTGCCCCAGGCTCAAGGTAAAAGA
* * * * * *
20409 TCGAATGGTGTCAATCTGCCCCAGGCTCGGGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGC
1 TCAAAAGATG-CAATCTGCCCCAAGCT-GGGGTAAGAGATTGGCTGATGATGATCTGCCTCAAGC
* * *
20474 TCTGGGTAAGAGATCGAATGGCTATAATTCACCCCAAGCTCGAGGTAAGAGATTGGTTGATGGTG
64 TC-GGGTAAGAGATCGAATGGCTGTAATTCACCCCAAGCTCGGGGTAAGAGATTGGTTGATAGTG
*
20539 ATCTGCCCCAAGCTCAAGGTAAAAGA
128 ATCTGCCCCAGGCTCAAGGTAAAAGA
* * * * * * *
20565 TCAAACAGATGCAATCTGCCCCAAGCTTGGGGTAAGGGATTGGTTGATGGTGATTTGCCTTAGGT
1 TCAAA-AGATGCAATCTGCCCCAAGC-TGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAAGC
* * * * *
20630 TCGGGGTAAAAGATCGAATGGTTGTAATTTACCCTAGGCTCGGGGTAAGAGATTGGCTT-ATAGT
64 TC-GGGTAAGAGATCGAATGGCTGTAATTCACCCCAAGCTCGGGGTAAGAGATTGG-TTGATAGT
20694 GATCTGCCCCAGGCTC
127 GATCTGCCCCAGGCTC
20710 GGGGTAAGAG
Statistics
Matches: 249, Mismatches: 45, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
154 2 0.01
155 20 0.08
156 218 0.88
157 9 0.04
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (153 bp):
TCAAAAGATGCAATCTGCCCCAAGCTGGGGTAAGAGATTGGCTGATGATGATCTGCCTCAAGCTC
GGGTAAGAGATCGAATGGCTGTAATTCACCCCAAGCTCGGGGTAAGAGATTGGTTGATAGTGATC
TGCCCCAGGCTCAAGGTAAAAGA
Found at i:20708 original size:39 final size:39
Alignment explanation
Indices: 20344--20760 Score: 199
Period size: 39 Copynumber: 10.7 Consensus size: 39
20334 AATAACTGCA
* * *
20344 ATCTGCCCCAAGCTCGGGGTAAGAGATTGGCTGATTGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGTG
* * * * * * ** ** *
20383 ATCTACCTCAGGCTTGAGGTAAAAGATCGAATGGT-GTCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGT-G
* *
20422 ATCTGCCCCAGGCTCGGGGTAAGAGATTTGCTGAT-GATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAG-TG
* * *
20461 ATCTGCCCCAAGCTCTGGGTAAGAGATCGAATGGC-TATAAT-
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT----TGGCTTATAGTG
* * * *
20502 -TC-ACCCCAAGCTCGAGGTAAGAGATTGG-TTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTT-ATAGTG
* ** * ** *
20539 ATCTGCCCCAAGCTCAAGGTAAAAGA-T--CAAACAGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAG-TG
* * * *
20576 CAATCTGCCCCAAGCTTGGGGTAAGGGATTGG-TTGATGGTG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTT-ATAGTG
* ** * * * ** ** * *
20617 ATTTGCCTTAGGTTCGGGGTAAAAGATCGAATGGTTGTA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGTG
* * *
20656 ATTTACCCTAGGCTCGGGGTAAGAGATTGGCTTATAGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGTG
20695 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGTG
**
20734 ATCTGCCCCAGGCTCGGCATAAGAGAT
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT
20761 CGGGGTTTTC
Statistics
Matches: 279, Mismatches: 78, Indels: 42
0.70 0.20 0.11
Matches are distributed among these distances:
35 4 0.01
36 5 0.02
37 2 0.01
38 5 0.02
39 248 0.89
40 5 0.02
41 2 0.01
42 5 0.02
43 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTTATAGTG
Found at i:20738 original size:156 final size:155
Alignment explanation
Indices: 20286--20760 Score: 413
Period size: 156 Copynumber: 3.0 Consensus size: 155
20276 ATGATTGGGA
* * * * ** ** *
20286 AAGACATTGGCTGATGATGATCTGCCTCAAGCTCGAGGTAAGAGATCGAATAACTGCAA-TCTGC
1 AAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTATAATTC-AC
* * * * * *
20350 CCCAAGCTCGGGGTAAGAGATTGGCTGATTGTGATCTACCTCAGGCTTGAGGTAAAAGA-T-CGA
65 CCCAAGCTCGGGGTAAGAGATTGGCTTATAGTGATCTGCCCCAGGCTCGAGGTAAAAGATTGCTA
* *
20413 ATGGTGTCAATCTGCCCCAGGCTCGGGGT
130 ATAGTG---ATCTGCCCCAAGCTCGGGGT
* * *
20442 AAGAGATTTGCTGATGATGATCTGCCCCAAGCTCTGGGTAAGAGATCGAATGGCTATAATTCACC
1 AAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTATAATTCACC
* * * * *
20507 CCAAGCTCGAGGTAAGAGATTGG-TTGATGGTGATCTGCCCCAAGCTCAAGGTAAAAGA-T-CAA
66 CCAAGCTCGGGGTAAGAGATTGGCTT-ATAGTGATCTGCCCCAGGCTCGAGGTAAAAGATTGCTA
* *
20569 ACAGATGCAATCTGCCCCAAGCTTGGGGT
130 ATAG-TG--ATCTGCCCCAAGCTCGGGGT
* * * * ** * * * * *
20598 AAGGGATTGGTTGATGGTGATTTGCCTTAGGTTCGGGGTAAAAGATCGAATGGTTGTAATTTACC
1 AAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTATAATTCACC
* * * * *
20663 CTAGGCTCGGGGTAAGAGATTGGCTTATAGTGATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTT
66 CCAAGCTCGGGGTAAGAGATTGGCTTATAGTGATCTGCCCCAGGCTCGAGGTAAAAGATT-GCTA
* **
20728 ATAGTGATCTGCCCCAGGCTCGGCAT
130 ATAGTGATCTGCCCCAAGCTCGGGGT
20754 AAGAGAT
1 AAGAGAT
20761 CGGGGTTTTC
Statistics
Matches: 259, Mismatches: 53, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
155 1 0.00
156 245 0.95
157 7 0.03
158 2 0.01
159 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (155 bp):
AAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAAAGATCGAATGGCTATAATTCACC
CCAAGCTCGGGGTAAGAGATTGGCTTATAGTGATCTGCCCCAGGCTCGAGGTAAAAGATTGCTAA
TAGTGATCTGCCCCAAGCTCGGGGT
Found at i:21105 original size:49 final size:49
Alignment explanation
Indices: 20984--21467 Score: 367
Period size: 49 Copynumber: 9.9 Consensus size: 49
20974 CTTCAATCCG
* * * * * * *
20984 CATGGTACTAAATTCACCTTTGCGGCTTAAATTTTTTCTTTCATGCTTTT
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATG-TCTT
* * * * * **
21034 GA-GGTA-TAAGGTTCGCCATTGCGACTTAAACCTTTCCCTTTGTGTCTT
1 CATGGTACT-AGATTCACCGTTGCGACTTAAATCTTTCCCTTCATGTCTT
* *
21082 CATGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCTCTTCATG-CTT
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATGTCTT
* * * * **
21130 C-TGAGGTA-TAAGGCTT-GCCATTGCGACTTAAACCTTTCCCTTTGTGTCTT
1 CAT--GGTACT-A-GATTCACCGTTGCGACTTAAATCTTTCCCTTCATGTCTT
* * ** * *
21180 CGTGGTACTGGATTCGTCGTTTCGACTTAAATCTTTCCCTTCATGCTTTT
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATG-TCTT
* * * *
21230 GA-GGTACAAGGTTCACCGTTGCGACTTAAACCTTTCCCTTCATGTCTT
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATGTCTT
* * * * * * *
21278 CGTGGTACTAAATTCGCCGTTGTGGCTTAAATATTTCCCTTCATGCTTTT
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATG-TCTT
* * ** *
21328 GA-GGTACAACG-TTGGCCGTTGCGACTTAAA-CATTTCCCTTCATATCTT
1 CATGGTACTA-GATTCACCGTTGCGACTTAAATC-TTTCCCTTCATGTCTT
* * *
21376 CGTGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATATCTT
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATGTCTT
* *
21425 CATGGTACTAGATTTACCGTTGCGGCTTAAATCTTTCCCTTCA
1 CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCA
21468 AATTTTCATT
Statistics
Matches: 337, Mismatches: 78, Indels: 39
0.74 0.17 0.09
Matches are distributed among these distances:
47 1 0.00
48 20 0.06
49 298 0.88
50 17 0.05
51 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (49 bp):
CATGGTACTAGATTCACCGTTGCGACTTAAATCTTTCCCTTCATGTCTT
Found at i:21307 original size:147 final size:146
Alignment explanation
Indices: 20986--21467 Score: 447
Period size: 147 Copynumber: 3.3 Consensus size: 146
20976 TCAATCCGCA
* * * * * * * *
20986 TGGTACTAAATTCACCTTTGCGGCTTAAATTTTTTCTTTCATGCTTTTGAGGTATAAGGTTCGCC
1 TGGTACTAAATT-GCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTCGAGGTACAACGTTCGCC
* * ** *
21051 ATTGCGACTTAAACCTTTCCCTTTGTGTCTTC-ATGGTACTAGATTCACCGTTGCGGCTTAAATC
65 GTTGCGACTTAAACATTTCCCTTCATATCTTCGA-GGTACTAGATTCACCGTTGCGGCTTAAATC
*
21115 TTTCTCTTCATG-CTTCTG
129 TTTCCCTTCATGTCTTC-G
* * * * * ** * **
21133 AGGTA-TAAGGCTTGCCATTGCGACTTAAACCTTTCCCTTTGTG-TCTTCGTGGTAC-TGGATTC
1 TGGTACTAA--ATTGCCGTTGCGGCTTAAATCTTTCCCTTCATGCT-TTCGAGGTACAACG-TTC
* * * * * * *
21195 GTCGTTTCGACTTAAATC-TTTCCCTTCAT-GCTTTTGAGGTACAAGGTTCACCGTTGCGACTTA
62 GCCGTTGCGACTTAAA-CATTTCCCTTCATATC-TTCGAGGTACTAGATTCACCGTTGCGGCTTA
*
21258 AACCTTTCCCTTCATGTCTTCG
125 AATCTTTCCCTTCATGTCTTCG
* * * *
21280 TGGTACTAAATTCGCCGTTGTGGCTTAAATATTTCCCTTCATGCTTTTGAGGTACAACGTTGGCC
1 TGGTACTAAATT-GCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTCGAGGTACAACGTTCGCC
*
21345 GTTGCGACTTAAACATTTCCCTTCATATCTTCGTGGTACTAGATTCACCGTTGCGGCTTAAATCT
65 GTTGCGACTTAAACATTTCCCTTCATATCTTCGAGGTACTAGATTCACCGTTGCGGCTTAAATCT
* *
21410 TTCCCTTCATATCTTCA
130 TTCCCTTCATGTCTTCG
* *
21427 TGGTACTAGATTTACCGTTGCGGCTTAAATCTTTCCCTTCA
1 TGGTACTA-AATTGCCGTTGCGGCTTAAATCTTTCCCTTCA
21468 AATTTTCATT
Statistics
Matches: 264, Mismatches: 56, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
146 10 0.04
147 237 0.90
148 17 0.06
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (146 bp):
TGGTACTAAATTGCCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTCGAGGTACAACGTTCGCCG
TTGCGACTTAAACATTTCCCTTCATATCTTCGAGGTACTAGATTCACCGTTGCGGCTTAAATCTT
TCCCTTCATGTCTTCG
Found at i:21432 original size:98 final size:98
Alignment explanation
Indices: 20986--21419 Score: 582
Period size: 98 Copynumber: 4.4 Consensus size: 98
20976 TCAATCCGCA
* * * * * *
20986 TGGTACTAAATTCACCTTTGCGGCTTAAATTTTTTCTTTCATGCTTTTGAGGTATAAGGTTCGCC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGGTTCGCC
* ** *
21051 ATTGCGACTTAAACCTTTCCCTTTGTGTCTTCA
66 GTTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * *
21084 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCTCTTCATGCTTCTGAGGTATAAGGCTT-GC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGG-TTCGC
* **
21148 CATTGCGACTTAAACCTTTCCCTTTGTGTCTTCG
65 CGTTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* ** * * *
21182 TGGTACTGGATTCGTCGTTTCGACTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGGTTCACC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGGTTCGCC
21247 GTTGCGACTTAAACCTTTCCCTTCATGTCTTCG
66 GTTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * * * * *
21280 TGGTACTAAATTCGCCGTTGTGGCTTAAATATTTCCCTTCATGCTTTTGAGGTACAACGTTGGCC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGGTTCGCC
* *
21345 GTTGCGACTTAAACATTTCCCTTCATATCTTCG
66 GTTGCGACTTAAACCTTTCCCTTCATGTCTTCG
21378 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAT
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCAT
21420 ATCTTCATGG
Statistics
Matches: 298, Mismatches: 36, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
97 2 0.01
98 294 0.99
99 2 0.01
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (98 bp):
TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGGTTCGCC
GTTGCGACTTAAACCTTTCCCTTCATGTCTTCG
Done.