Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012833.1 Kokia drynarioides strain JFW-HI SEQ_127846, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6076
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37


Found at i:5303 original size:18 final size:19

Alignment explanation


    Indices: 5258--5304  Score: 60
    Period size: 19  Copynumber: 2.5  Consensus size: 19

       5248 AGTATGTATG

                *     *       *
       5258 ACTTATAATATGTATGAAT
          1 ACTTGTAATACGTATGAAC

                               
       5277 ACTTGTAATACGTATGAAC
          1 ACTTGTAATACGTATGAAC

                      
       5296 AC-TGTAATA
          1 ACTTGTAATA

       5305 ATATAAGAAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  18    7  0.28
  19   18  0.72

ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36


Consensus pattern (19 bp):   
ACTTGTAATACGTATGAAC
Done.