genome.fa.s12834.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012834.1 Kokia drynarioides strain JFW-HI SEQ_127847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108200

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--30	2	15.5	2	93	6	53	53	0	0	46	1.00
90--118	12	2.3	13	94	5	51	20	3	0	75	0.94
2116--2175	27	2.3	26	82	8	68	30	1	5	63	1.25
3022--3078	25	2.4	23	78	18	64	33	5	1	59	1.30
10780--10921	56	2.5	56	86	0	176	45	14	9	30	1.77
11760--11805	23	2.0	23	95	0	83	63	0	0	36	0.95
11762--11819	23	2.6	23	86	2	73	65	3	0	31	1.09
19389--19423	5	7.0	5	96	0	52	0	20	34	45	1.51
21481--21518	17	2.2	18	90	4	60	57	2	39	0	1.12
21570--21632	19	3.3	19	74	20	60	31	1	4	61	1.26
35833--35909	31	2.5	31	82	6	93	59	6	5	28	1.44
47495--47538	18	2.4	18	80	3	52	54	2	38	4	1.33
51504--51539	18	2.0	18	94	0	63	19	11	11	58	1.62
52020--52834	147	5.5	147	77	3	701	39	19	24	16	1.91
52020--52833	49	16.6	49	76	5	548	39	19	24	16	1.91
53291--53325	16	2.1	17	89	5	54	34	20	31	14	1.92
54083--54121	19	2.1	19	85	0	51	61	2	2	33	1.23
58078--58199	60	2.0	60	96	0	226	41	14	9	33	1.79
74771--74798	13	2.2	13	100	0	56	35	7	0	57	1.26
78835--78867	12	2.8	12	100	0	66	33	24	18	24	1.97
78835--78871	6	6.2	6	87	0	56	32	21	18	27	1.97
78966--78994	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79927--80705	397	2.0	387	98	0	1405	34	10	13	40	1.79
82092--82125	14	2.3	15	90	5	52	20	5	2	70	1.21
89964--89997	17	2.0	17	100	0	68	29	17	41	11	1.85
90986--91011	4	6.5	4	100	0	52	23	0	0	76	0.78
107040--107143	37	2.7	38	74	5	93	33	25	17	23	1.96
107246--107282	18	2.1	18	89	0	56	24	27	0	48	1.51

Tables:   1

The End!