Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012838.1 Kokia drynarioides strain JFW-HI SEQ_127851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4611
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:1008 original size:74 final size:74

Alignment explanation


    Indices: 887--1036  Score: 246
    Period size: 74  Copynumber: 2.0  Consensus size: 74

        877 TGGAGGGATA

                       *     *               *                               
        887 CAATGTTCCATTCAAGAGTTTTTAAATGAATCACCACATTCATTTATGAATGATGAATGATGGCT
          1 CAATGTTCCATGCAAGACTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGCT

                     
        952 GTTCACATT
         66 GTTCACATT

                   *                            *                            
        961 CAATGTTTCATGCAAGACTTTTTAAATGAATCAACATATTCATTTATGAATGATGAATGATGGCT
          1 CAATGTTCCATGCAAGACTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGCT

                  *  
       1026 GTTCACTTT
         66 GTTCACATT

              
       1035 CA
          1 CA

       1037 TTTTGTAAAG


Statistics
Matches: 70,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  74   70  1.00

ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37


Consensus pattern (74 bp):   
CAATGTTCCATGCAAGACTTTTTAAATGAATCAACACATTCATTTATGAATGATGAATGATGGCT
GTTCACATT
Done.