Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012844.1 Kokia drynarioides strain JFW-HI SEQ_127857, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2808
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36


Found at i:1333 original size:27 final size:28

Alignment explanation


    Indices: 1303--1375  Score: 69
    Period size: 27  Copynumber: 2.5  Consensus size: 28

       1293 TAATTGATAT

                             *           
       1303 ATAATTTTAATATTAATTAAT-TTAAT-A
          1 ATAATTTTAATATTAATAAATATT-ATCA

                *     *                  
       1330 ATAAATTTAAAATATAATAAATATTATCA
          1 ATAATTTTAATAT-TAATAAATATTATCA

                             
       1359 ATAATTAATTAATATTA
          1 ATAATT--TTAATATTA

       1376 CTTAGTGTTA


Statistics
Matches: 36,  Mismatches: 5, Indels: 7
        0.75            0.10        0.15

Matches are distributed among these distances:
  27   11  0.31
  28    9  0.25
  29    8  0.22
  30    2  0.06
  31    6  0.17

ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45


Consensus pattern (28 bp):   
ATAATTTTAATATTAATAAATATTATCA
Done.