genome.fa.s12847.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012847.1 Kokia drynarioides strain JFW-HI SEQ_127861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  299897

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786--1894	55	2.0	55	88	0	164	47	15	9	27	1.76
6103--6394	144	2.0	144	94	0	512	21	15	15	47	1.82
18784--18834	27	1.9	28	84	11	72	56	11	7	23	1.61
19165--19203	2	19.5	2	94	0	69	51	0	0	48	1.00
20954--21023	31	2.3	31	87	0	104	20	14	15	50	1.78
23698--23744	24	2.0	23	84	12	60	48	0	0	51	1.00
47521--47551	13	2.4	13	94	0	53	25	19	0	54	1.44
48066--48148	24	3.2	24	70	18	67	57	9	13	19	1.63
48065--48149	25	3.2	25	71	16	73	58	9	12	18	1.61
49602--49628	3	9.0	3	100	0	54	33	0	0	66	0.92
49570--49616	23	2.0	24	84	12	62	48	0	0	51	1.00
50102--50130	14	2.1	14	100	0	58	44	20	6	27	1.77
53392--53442	25	2.0	26	88	3	77	66	5	7	19	1.38
56482--56515	17	1.9	18	88	5	52	44	23	2	29	1.68
59180--59214	18	2.0	17	88	5	52	45	0	5	48	1.26
59739--59763	7	3.6	7	100	0	50	24	0	76	0	0.80
60511--60548	19	2.0	20	89	5	60	50	10	0	39	1.37
60795--60828	2	17.0	2	100	0	68	50	0	0	50	1.00
74269--74298	2	15.0	2	100	0	60	50	50	0	0	1.00
80448--80538	26	3.5	26	81	0	101	29	17	20	31	1.96
91649--91743	40	2.4	40	87	0	127	35	15	11	36	1.84
96973--97042	2	35.0	2	91	5	97	44	1	0	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96990--97061	32	2.2	33	95	4	130	38	4	0	56	1.18
97032--97080	18	2.7	18	75	12	55	36	6	0	57	1.24
97240--97299	25	2.4	25	80	0	66	16	6	8	68	1.37
103221--103265	18	2.5	18	85	7	65	31	6	6	55	1.52
104168--104235	32	2.1	32	97	0	127	45	8	2	42	1.50
104334--104483	74	2.0	74	98	0	291	38	12	5	43	1.66
105679--105739	31	2.0	30	83	3	77	40	6	8	44	1.60
107256--107419	46	3.6	46	77	8	145	34	21	18	26	1.96
108405--108444	4	9.2	4	84	15	53	45	7	0	47	1.31
108410--108457	19	2.6	18	87	6	69	45	8	0	45	1.33
110883--111175	42	6.8	43	83	8	248	30	25	10	33	1.90
110883--111058	87	2.0	87	91	4	284	31	23	10	35	1.88
114244--114269	2	13.0	2	100	0	52	50	0	0	50	1.00
115927--116095	42	4.0	42	86	3	216	28	26	11	33	1.92
118542--118616	25	2.9	26	80	7	73	29	18	10	41	1.84
120350--120399	26	1.9	26	87	0	73	26	10	16	48	1.77
122706--122741	10	3.7	10	88	7	56	16	5	2	75	1.12
127141--127311	37	4.6	37	88	0	254	43	28	17	10	1.82
133083--133109	14	1.9	14	100	0	54	22	0	0	77	0.76
133716--133756	19	2.1	19	86	4	55	26	4	31	36	1.78
133926--133968	17	2.4	18	85	11	54	30	0	6	62	1.21
133926--134018	42	2.2	42	78	3	98	36	1	4	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134128--134190	17	3.5	17	80	19	67	34	0	3	61	1.12
134108--134207	43	2.4	41	82	12	114	36	0	4	60	1.16
133922--134255	186	1.8	185	86	5	487	43	2	3	50	1.35
134495--134533	16	2.4	17	86	4	53	12	2	5	79	1.00
141747--142114	161	2.3	162	81	4	422	33	8	19	38	1.82
144093--144137	22	2.0	22	91	0	72	42	26	6	24	1.79
152860--152893	11	3.0	11	91	4	50	8	8	2	79	1.03
156215--156261	23	2.0	22	84	8	58	57	12	0	29	1.36
172603--172650	21	2.3	21	82	7	53	33	20	18	27	1.96
188787--188826	21	1.9	21	94	0	71	22	7	27	42	1.80
192663--192724	33	1.9	32	90	3	97	38	4	19	37	1.73
192876--192929	20	2.7	20	79	0	54	27	24	11	37	1.89
199481--199513	17	1.9	17	93	0	57	51	12	15	21	1.75
199894--199923	15	1.9	16	93	6	53	26	20	13	40	1.89
202611--202664	26	2.1	26	89	0	81	27	22	20	29	1.98
205669--205711	17	2.5	17	96	0	77	20	20	6	51	1.71
206796--206872	37	2.1	38	82	2	93	35	24	15	24	1.94
206929--206978	26	1.9	26	91	0	82	30	20	22	28	1.98
207764--207794	16	1.9	16	93	0	53	22	16	0	61	1.34
218333--218438	53	2.0	53	98	1	205	42	9	15	33	1.79
218454--218499	20	2.3	20	100	0	92	41	19	13	26	1.88
227390--227479	28	3.2	28	64	25	71	36	14	4	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227386--227494	57	1.9	57	94	0	191	36	13	5	44	1.68
233035--233063	15	1.9	15	100	0	58	31	13	27	27	1.94
241630--241667	20	1.9	20	84	10	51	34	13	15	36	1.87
242519--242559	4	10.2	4	83	0	55	48	24	2	24	1.63
245408--245432	13	1.9	13	100	0	50	52	8	0	40	1.31
249357--249390	13	2.6	13	90	0	50	61	29	0	8	1.26
258771--258974	102	2.0	102	99	0	399	25	24	13	36	1.92
261192--261307	43	2.8	41	81	5	135	24	29	19	26	1.99
261229--261311	43	1.9	43	92	0	139	24	25	19	31	1.98
262614--262661	23	2.1	23	96	0	87	41	16	22	18	1.90
262764--262829	21	3.0	22	93	4	116	40	18	7	33	1.79
265947--266030	21	4.0	21	78	9	98	41	15	7	35	1.75
268116--268168	23	2.4	21	75	9	52	52	0	0	47	1.00
271680--271717	19	2.0	20	94	5	69	26	13	21	39	1.89
272311--272386	30	2.5	30	93	0	125	34	18	22	25	1.96
274694--274740	21	2.2	21	88	0	67	36	21	12	29	1.91
275583--275946	195	1.9	195	83	3	482	27	27	17	28	1.97
280968--281160	90	2.1	90	80	1	217	25	19	12	43	1.86
281324--281468	28	5.0	28	71	15	107	49	11	14	24	1.76
281302--281490	59	3.2	58	86	2	234	47	12	15	24	1.79
286181--286257	18	4.2	19	72	12	79	28	23	16	31	1.96
291551--291603	12	4.2	12	75	13	52	1	35	0	62	1.06

Tables:   1

The End!