Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012849.1 Kokia drynarioides strain JFW-HI SEQ_127863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36369
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Warning! 7 characters in sequence are not A, C, G, or T
Found at i:458 original size:216 final size:216
Alignment explanation
Indices: 39--2276 Score: 2721
Period size: 216 Copynumber: 10.4 Consensus size: 216
29 GGTTCCCTAA
*
39 ATCCATTCCTTAGAGCAATTTT-TCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCTAAA
1 ATCCATTCCTTAGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * *
103 TA---TGTCATTTTGCAAACAAGTTTTGCTCTTTGAATTAAAAACTTCTTTGCATGAGAATTGTT
65 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * *
165 TCTCTCTTTGTTCTTGGACGAACTTTCGGAGTTGTCAAACTTTTATGAGTTATTTTTTAACTTCG
130 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCG
*
230 GTTCCCTAAAGTATTCAATAAG
195 GTTCCCTAAAGTATTCAAGAAG
** * *
252 ATCCATTCCTTAGAGCAATTTTCTGAACATTTTATACTCGGGAAATCGCATCATTTGGTCTAAGT
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
317 AGTTTGTCATTTTGTAAACAAGTTTTAGACTTTGAATTAAAAACTTATTTACGAGAGAATTGTAT
66 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * ** * * * * * * * ***
382 CACTCTTGGTCCATGGACGAACTCCCGAACTTATCCAACTTTGAGGAGATCTTTTATAGCTTAAC
131 CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGG
* *
447 TTCCTTAAAGTATTCAAGACG
196 TTCCCTAAAGTATTCAAGAAG
* *
468 A-CTCATTCCTTTGAGCATTTTTCTGAACATTCCATGCTCGGGAAA-CTGCATCATTTGGTCTAA
1 ATC-CATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAA
* ** * * **
531 ATAGTATGTCATTTCCTAAACAAGTTTTAGTCTTGGAATTAAAAACTTATTTGTGTGAGAATTGT
64 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * * * * *
596 TTCTCACTTTCTTCTTGGAAGAACTTTCGAACGTGTCAACCTTTTACGACTTCTTTTATAACTTT
129 TTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTC
* * * ***
661 TGTTCCTTAAAGCATTCAAGGCT
194 GGTTCCCTAAAGTATTCAAGAAG
* * ** * * ** * *
684 ATCCATTCCTTTGAGCAGTTTTCCAAATATTCCTTGCTCAAGAAATCGCATCATTGGGTCAAAAT
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
749 AGATTGTCATTTTGTAAACACGTTTTTGGTCATTGAATTAAAAACTTATTTACGTGAGAATTGTT
66 AGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * *
814 TCTCTCTTTCTTCTTGGACGAACTTCCGAAGTTGTCAAACTTTGACGAGTTATTTTTTAACTTTG
130 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCG
* * *
879 GTTCCCTAAAGCATTCAACAAA
195 GTTCCCTAAAGTATTCAAGAAG
* * *
901 ATCCATTCCTTAGAGCAAATTTC-GAGCATTCCATGCTCGGGAAATCGCATCATTTGATCTAAAT
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
*
965 A---TGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
66 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
** * *
1027 CTCTCTTTG-TCTTTGTTCGAACTTTTGAACTTGTCAAACTTTTACGAGTTATTTT-TAAACATC
131 CTCTCTTTGTTC-TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTAT-AACTTC
*
1090 GGTTCCCTAAAGTATTCAACAAG
194 GGTTCCCTAAAGTATTCAAGAAG
* * * *
1113 ATCCATTCCTTAGAGCAATTTT-TCGAACAATCCCTGCTCGAGATATCGCATCATTTGGTCTAAA
1 ATCCATTCCTTAGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
1177 TAATTTGTCATTTTGCAAACAAGTTTTGTTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
65 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * *
1242 TCTCTCTTTGTTCTTAGATGCACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCG
130 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCG
1307 GTTCCCTAAAGTATTCAAGAAG
195 GTTCCCTAAAGTATTCAAGAAG
* * * * * **
1329 ATTCATTCCTTTGAGCAACTTTCCGAACATTCCATCCTTTGGAAATCGCATCATTTGGTCTAAAT
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
*
1394 AGTTTGTCATTTTGTATACAA-TCTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
66 AGTTTGTCATTTTGTAAACAAGT-TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * ** * *
1458 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATTGCTCCA
130 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCG
* * *
1523 GATCCTTAAAGTATTCAAGACG
195 GTTCCCTAAAGTATTCAAGAAG
* * * ** * *
1545 ATCCATTCCTTCGAGCAATTTTTTGAATATTCCATGCTCGAAAAATCGAATCATTT-ATCCTAAA
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGT-CTAAA
* * * *
1609 TAATTTGTTATTTTGCAAACAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGAGAATTGTT
65 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* *
1673 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAATTTTTACGAGTTATTTT-TAACTTCA
130 TCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCG
*
1737 GTTCCCTAAAGTATTCAATAAG
195 GTTCCCTAAAGTATTCAAGAAG
** * * * *
1759 ATCCATTTTTTAGAGCAATTTTCCGAATATTCCATCCTTGGGAAATCGCATCATTTGGTCTAAAT
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* *
1824 AGTTTGTTATTTTGTAAACAAGTTTTGGTCTTTGAATTCAAAACTTATTTACGTGAGAATTGTTT
66 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * *
1889 CTCTCTTTATTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTTGG
131 CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGG
* * *
1954 ATCCTTAAAGTATTCAAGACG
196 TTCCCTAAAGTATTCAAGAAG
** * *
1975 ATCCATTCCTTTCAGCAATTTTCTGAATATTCCATGCTCGGTAAATCGCATCATTTGGTCTAAAT
1 ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
2040 AGTTTGTCGTTTTGCAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
66 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * *
2105 CTCTCTTTGTTCTTTGACAAACTTCCAAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAG
131 CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGG
*
2170 TTCCCTAAAGTATTCAACAAG
196 TTCCCTAAAGTATTCAAGAAG
* * * *
2191 ATCCATTCCATT-GAGCAATTTTCCGAACATTCCATCCTTGGGAAATCGCATCATTTGCTCTAAA
1 ATCCATTCC-TTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
2255 TAATTTGTCACTTTGTATACAA
65 TAGTTTGTCATTTTGTAAACAA
2277 TGATACGAGT
Statistics
Matches: 1724, Mismatches: 275, Indels: 49
0.84 0.13 0.02
Matches are distributed among these distances:
211 3 0.00
212 132 0.08
213 112 0.06
214 119 0.07
215 140 0.08
216 1082 0.63
217 136 0.08
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
ATCCATTCCTTAGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
CTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGG
TTCCCTAAAGTATTCAAGAAG
Found at i:8308 original size:28 final size:29
Alignment explanation
Indices: 8277--8474 Score: 174
Period size: 28 Copynumber: 7.0 Consensus size: 29
8267 AGAATGGTGA
* *
8277 CAAAACTATAAAATCT-AAAAAATAGTGG
1 CAAAACTGTAAAATCTGGAAAAATAGTGG
*
8305 CAAAATTGTAAAATCTGGAAAAATAGTGG
1 CAAAACTGTAAAATCTGGAAAAATAGTGG
* * * * * **
8334 TAGAACAGAAAAAT-TTGAAAACCAGTGG
1 CAAAACTGTAAAATCTGGAAAAATAGTGG
* *
8362 CAAAACTGTATAGTCTGGAAAACA-A-TGG
1 CAAAACTGTAAAATCTGGAAAA-ATAGTGG
* *
8390 CAAAACTGTAAAATCTGGAAAAGTAATGG
1 CAAAACTGTAAAATCTGGAAAAATAGTGG
* *
8419 TAAAATTGTAAAATCT-GAAAAATTA-TGG
1 CAAAACTGTAAAATCTGGAAAAA-TAGTGG
* *
8447 CAAAACTGTAAAATATGGAAAACTAGTG
1 CAAAACTGTAAAATCTGGAAAAATAGTG
8475 ATAAAGCTAT
Statistics
Matches: 133, Mismatches: 29, Indels: 15
0.75 0.16 0.08
Matches are distributed among these distances:
28 80 0.60
29 53 0.40
ACGTcount: A:0.49, C:0.10, G:0.18, T:0.23
Consensus pattern (29 bp):
CAAAACTGTAAAATCTGGAAAAATAGTGG
Found at i:8411 original size:57 final size:57
Alignment explanation
Indices: 8277--8474 Score: 166
Period size: 57 Copynumber: 3.5 Consensus size: 57
8267 AGAATGGTGA
* * * * * * *
8277 CAAAACTATAAAATCT-AAAAAATAGTGGCAAAATTGTAAAATCTGGAAAAATAGTGG
1 CAAAACTGTAAAATATGGAAAACTAGTGGCAAAACTGTAAAATCT-GAAAAACAATGG
* * * * * * * * *
8334 TAGAACAGAAAAAT-TTGAAAACCAGTGGCAAAACTGTATAGTCTGGAAAACAATGG
1 CAAAACTGTAAAATATGGAAAACTAGTGGCAAAACTGTAAAATCTGAAAAACAATGG
* * * * * **
8390 CAAAACTGTAAAATCTGGAAAAGTAATGGTAAAATTGTAAAATCTGAAAAATTATGG
1 CAAAACTGTAAAATATGGAAAACTAGTGGCAAAACTGTAAAATCTGAAAAACAATGG
8447 CAAAACTGTAAAATATGGAAAACTAGTG
1 CAAAACTGTAAAATATGGAAAACTAGTG
8475 ATAAAGCTAT
Statistics
Matches: 107, Mismatches: 32, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
56 20 0.19
57 87 0.81
ACGTcount: A:0.49, C:0.10, G:0.18, T:0.23
Consensus pattern (57 bp):
CAAAACTGTAAAATATGGAAAACTAGTGGCAAAACTGTAAAATCTGAAAAACAATGG
Found at i:8466 original size:85 final size:85
Alignment explanation
Indices: 8302--8469 Score: 203
Period size: 85 Copynumber: 2.0 Consensus size: 85
8292 TAAAAAATAG
* * * *
8302 TGGCAAAATTGTAAAATCTGGAAAAATAGTGGTAGAACAGAAAAATTTGAAAACCAGTGGCAAAA
1 TGGCAAAACTGTAAAATCTGGAAAAATAATGGTAAAACAGAAAAATCTGAAAACCAGTGGCAAAA
* * *
8367 CTGTATAGTCTGGAAAACAA
66 CTGTAAAATATGGAAAACAA
* ** * **
8387 TGGCAAAACTGTAAAATCTGGAAAAGTAATGGTAAAATTGTAAAATCTGAAAAATTA-TGGCAAA
1 TGGCAAAACTGTAAAATCTGGAAAAATAATGGTAAAACAGAAAAATCTG-AAAACCAGTGGCAAA
8451 ACTGTAAAATATGGAAAAC
65 ACTGTAAAATATGGAAAAC
8470 TAGTGATAAA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
85 64 0.93
86 5 0.07
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.23
Consensus pattern (85 bp):
TGGCAAAACTGTAAAATCTGGAAAAATAATGGTAAAACAGAAAAATCTGAAAACCAGTGGCAAAA
CTGTAAAATATGGAAAACAA
Found at i:11060 original size:37 final size:37
Alignment explanation
Indices: 10993--11138 Score: 186
Period size: 37 Copynumber: 3.9 Consensus size: 37
10983 GTTCTTCAAT
* * *
10993 CACTGGCAAGAAGGCCTGCTAGGCATATAGCCCGAAAA
1 CACTGGCACGAA-GCCTGCTAGGCACATAGCCCGAATA
*
11031 CACTAGCACGAAGCCTGCTAGGCACATAGCCCGAATA
1 CACTGGCACGAAGCCTGCTAGGCACATAGCCCGAATA
* * *
11068 CACTGGCACGAAGCCTGCTAGGAAAATAGCCTGAATA
1 CACTGGCACGAAGCCTGCTAGGCACATAGCCCGAATA
* *
11105 CAAC-GGTACGAAGCCTGCTAGGCACATAACCCGA
1 C-ACTGGCACGAAGCCTGCTAGGCACATAGCCCGA
11139 TTTACTTAAA
Statistics
Matches: 94, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
37 82 0.87
38 12 0.13
ACGTcount: A:0.34, C:0.29, G:0.24, T:0.14
Consensus pattern (37 bp):
CACTGGCACGAAGCCTGCTAGGCACATAGCCCGAATA
Found at i:11459 original size:52 final size:52
Alignment explanation
Indices: 11379--11482 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
11369 TAATAATTAC
* *
11379 CCAGTTAAAAGCTTAAACATATTGATATAATAATAACAACTAAATCACATAG
1 CCAGTTAAAAGCTTAAACATATTAATATAATAATAACAACAAAATCACATAG
*
11431 CCAGTTAATAGCTTAAACATATTAATATAATAATAACAACAAAATCACATAG
1 CCAGTTAAAAGCTTAAACATATTAATATAATAATAACAACAAAATCACATAG
11483 TTAGATTTCC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (52 bp):
CCAGTTAAAAGCTTAAACATATTAATATAATAATAACAACAAAATCACATAG
Found at i:12469 original size:57 final size:57
Alignment explanation
Indices: 12405--12525 Score: 224
Period size: 57 Copynumber: 2.1 Consensus size: 57
12395 TTTAATAAAA
12405 TATTTGTATAACCTTTATAAATACCTATAAGTAATAAATAAACCATGCTTATTAATT
1 TATTTGTATAACCTTTATAAATACCTATAAGTAATAAATAAACCATGCTTATTAATT
*
12462 TATTTGTATAACCTTTATAAATACCTATAATTAATAAATAAACCATGCTTATTAATT
1 TATTTGTATAACCTTTATAAATACCTATAAGTAATAAATAAACCATGCTTATTAATT
*
12519 TACTTGT
1 TATTTGT
12526 CGGATTTGTG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (57 bp):
TATTTGTATAACCTTTATAAATACCTATAAGTAATAAATAAACCATGCTTATTAATT
Found at i:19669 original size:31 final size:32
Alignment explanation
Indices: 19603--19669 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
19593 ATTAGAATGG
*
19603 TCATTCCTTAAGCAAACATATATCATTGATAA
1 TCATTCCTTAAGCAAACATATATCATCGATAA
* * * *
19635 TCATTCC-TAAGCAATCATATTTTATCGATGA
1 TCATTCCTTAAGCAAACATATATCATCGATAA
19666 TCAT
1 TCAT
19670 GATATCATTC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 23 0.77
32 7 0.23
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.37
Consensus pattern (32 bp):
TCATTCCTTAAGCAAACATATATCATCGATAA
Found at i:20148 original size:28 final size:28
Alignment explanation
Indices: 20114--20423 Score: 102
Period size: 29 Copynumber: 10.8 Consensus size: 28
20104 TTTTTTTAAG
20114 AATAGTGGCAAAACTATAAAATCTAAAA
1 AATAGTGGCAAAACTATAAAATCTAAAA
* * * * *
20142 AGTAGTGGCAAAATTGTAAATTTTAAAA
1 AATAGTGGCAAAACTATAAAATCTAAAA
* *
20170 AATAGTGGCAAAACTGA-AAATTTTGAAAA
1 AATAGTGGCAAAACT-ATAAAATCT-AAAA
** * * * **
20199 ACCAGTGGCAAAAGTTTAAAATATGGAA
1 AATAGTGGCAAAACTATAAAATCTAAAA
* * ** * *
20227 AACAATGATAGAACTATAAAATCTGGAAA
1 AATAGTGGCAAAACTATAAAATCT-AAAA
* * * * * **
20256 ACTTGTGGCAAAACTGTAAATTTTGGAA
1 AATAGTGGCAAAACTATAAAATCTAAAA
* * * * * * *
20284 AACAATGGTAGAATTGTAAAATCTGTAAA
1 AATAGTGGCAAAACTATAAAATCT-AAAA
* * *
20313 ACTAGTGACAAAACTCTAAAATCTAAAAAAA
1 AATAGTGGCAAAACTATAAAATCT---AAAA
* * *
20344 AATTGTGGCAGAACTGTAAAA-CATAAATA
1 AATAGTGGCAAAACTATAAAATC-TAAA-A
* ** * *
20373 ACTAGTGATAAAGCTATAAAATTCTGAAA
1 AATAGTGGCAAAACTATAAAA-TCTAAAA
*
20402 AATAGTGGCATAACTATAAAAT
1 AATAGTGGCAAAACTATAAAAT
20424 TTGTAAAACA
Statistics
Matches: 196, Mismatches: 75, Indels: 22
0.67 0.26 0.08
Matches are distributed among these distances:
28 83 0.42
29 88 0.45
30 4 0.02
31 21 0.11
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (28 bp):
AATAGTGGCAAAACTATAAAATCTAAAA
Found at i:20257 original size:57 final size:57
Alignment explanation
Indices: 20196--20334 Score: 170
Period size: 57 Copynumber: 2.4 Consensus size: 57
20186 AAAATTTTGA
* * *
20196 AAAACCAGTGGCAAAAGTTTAAAATATGGAAAACAATGATAGAACTATAAAATCTGG
1 AAAACTAGTGGCAAAACTCTAAAATATGGAAAACAATGATAGAACTATAAAATCTGG
* * * * * * * *
20253 AAAACTTGTGGCAAAACTGTAAATTTTGGAAAACAATGGTAGAATTGTAAAATCTGT
1 AAAACTAGTGGCAAAACTCTAAAATATGGAAAACAATGATAGAACTATAAAATCTGG
*
20310 AAAACTAGTGACAAAACTCTAAAAT
1 AAAACTAGTGGCAAAACTCTAAAAT
20335 CTAAAAAAAA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 68 1.00
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.24
Consensus pattern (57 bp):
AAAACTAGTGGCAAAACTCTAAAATATGGAAAACAATGATAGAACTATAAAATCTGG
Found at i:20282 original size:29 final size:29
Alignment explanation
Indices: 20116--20332 Score: 118
Period size: 28 Copynumber: 7.6 Consensus size: 29
20106 TTTTTAAGAA
* * * * *
20116 TAGTGGCAAAACTATAAAATCT-AAAAAG
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
* * *
20144 TAGTGGCAAAATTGTAAATTTT-AAAAAA
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
* *
20172 TAGTGGCAAAACTGAAAATTTTGAAAAAC
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
* * * * *
20201 CAGTGGCAAAAGTTTAAAATATGGAAAAC
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
* ** * * * *
20230 -AATGATAGAACTATAAAATCTGGAAAAC
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
*
20258 TTGTGGCAAAACTGTAAATTTTGGAAAAC
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
* * * * * * *
20287 -AATGGTAGAATTGTAAAATCTGTAAAAC
1 TAGTGGCAAAACTGTAAATTTTGGAAAAC
* *
20315 TAGTGACAAAACTCTAAA
1 TAGTGGCAAAACTGTAAA
20333 ATCTAAAAAA
Statistics
Matches: 142, Mismatches: 44, Indels: 5
0.74 0.23 0.03
Matches are distributed among these distances:
28 84 0.59
29 58 0.41
ACGTcount: A:0.48, C:0.10, G:0.17, T:0.25
Consensus pattern (29 bp):
TAGTGGCAAAACTGTAAATTTTGGAAAAC
Found at i:20333 original size:86 final size:87
Alignment explanation
Indices: 20166--20363 Score: 204
Period size: 86 Copynumber: 2.3 Consensus size: 87
20156 TGTAAATTTT
* * *
20166 AAAAAATAGTGGCAAAACTGAAAATTTTGAAAAACCAGTGGCAAAAGTTTAAAATATGGAAAACA
1 AAAAAATTGTGGCAAAACTGTAAATTTTGAAAAACCAATGGCAAAAGTTTAAAATATGGAAAACA
* * *
20231 ATGATAGAACTATAAAATCT-G
66 ATGACAAAACTATAAAATCTAA
* * * * * * *
20252 GAAAACTTGTGGCAAAACTGTAAATTTTGGAAAA-CAATGGTAGAA-TTGTAAAATCTGTAAAAC
1 AAAAAATTGTGGCAAAACTGTAAATTTTGAAAAACCAATGGCAAAAGTT-TAAAATATGGAAAAC
* *
20315 TAGTGACAAAACTCTAAAATCTAAA
65 -AATGACAAAACTATAAAATCT-AA
*
20340 AAAAAATTGTGGCAGAACTGTAAA
1 AAAAAATTGTGGCAAAACTGTAAA
20364 ACATAAATAA
Statistics
Matches: 90, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
84 2 0.02
85 21 0.23
86 46 0.51
88 21 0.23
ACGTcount: A:0.49, C:0.10, G:0.17, T:0.24
Consensus pattern (87 bp):
AAAAAATTGTGGCAAAACTGTAAATTTTGAAAAACCAATGGCAAAAGTTTAAAATATGGAAAACA
ATGACAAAACTATAAAATCTAA
Found at i:22381 original size:38 final size:36
Alignment explanation
Indices: 22339--22658 Score: 218
Period size: 38 Copynumber: 8.5 Consensus size: 36
22329 TTAAGGCCGT
**
22339 CCTTTAAAAACGGTTGGGATAGGTCTTCTCTAAGGCAA
1 CCTTTAAAAA-GGTTGGGATA-AACTTCTCTAAGGCAA
* *
22377 CCTTTTAAAAAAGGTTGGGATAGAC-CCATCTAAGGCAA
1 CC-TTT-AAAAAGGTTGGGATAAACTTC-TCTAAGGCAA
* * *
22415 CC-TTAAAAAGGTTGGGATAGACCTTGTCTAATGCAA
1 CCTTTAAAAAGGTTGGGATA-AACTTCTCTAAGGCAA
* * * *
22451 CCTTTTAAAAAGATTGAGATAAACCTTGTCTAAAGCAA
1 CC-TTTAAAAAGGTTGGGATAAA-CTTCTCTAAGGCAA
* *
22489 CC-TTAAAAAGGTTGGGATATACCTCTTGCTTTAAGGCAAA
1 CCTTTAAAAAGGTTGGGATA-A--ACTT-CTCTAAGGC-AA
* * *
22529 CTTTTAAAAAAGGTTGGGATAAAC-CCATCTAAGGTAA
1 CCTTT-AAAAAGGTTGGGATAAACTTC-TCTAAGGCAA
* * * *
22566 CC-TTAAAAAGATTGGGATAGATCTTGTCTAAGTCAA
1 CCTTTAAAAAGGTTGGGATA-AACTTCTCTAAGGCAA
* * * *
22602 CCTTTTAAAAAGGTTGGGATAGACTTTGTCTAAGGTAG
1 CC-TTTAAAAAGGTTGGGATAAAC-TTCTCTAAGGCAA
22640 CCTTTAAAAAAGGTTGGGA
1 CCTTT-AAAAAGGTTGGGA
22659 ACATCCATTA
Statistics
Matches: 225, Mismatches: 35, Indels: 44
0.74 0.12 0.14
Matches are distributed among these distances:
35 29 0.13
36 43 0.19
37 11 0.05
38 96 0.43
39 20 0.09
40 8 0.04
41 3 0.01
42 15 0.07
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (36 bp):
CCTTTAAAAAGGTTGGGATAAACTTCTCTAAGGCAA
Found at i:22451 original size:74 final size:73
Alignment explanation
Indices: 22342--22622 Score: 346
Period size: 74 Copynumber: 3.8 Consensus size: 73
22332 AGGCCGTCCT
** * *
22342 TTAAAAACGGTTGGGATAGGTCTTCTCTAAGGCAACCTTTTAAAAAAGGTTGGGATAGACCCATC
1 TTAAAAA-GGTTGGGATAGACCTTGTCTAAGGCAACCTTTT-AAAAAGGTTGGGATAAACCCATC
22407 TAAGGCAACC
64 TAAGGCAACC
* * * **
22417 TTAAAAAGGTTGGGATAGACCTTGTCTAATGCAACCTTTTAAAAAGATTGAGATAAACCTTGTCT
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTTAAAAAGGTTGGGATAAACC-CATCT
*
22482 AAAGCAACC
65 AAGGCAACC
* * *
22491 TTAAAAAGGTTGGGATATACCTCTTGCTTTAAGGCAAACTTTTAAAAAAGGTTGGGATAAACCCA
1 TTAAAAAGGTTGGGATAGA-C-CTTG-TCTAAGGCAACCTTTT-AAAAAGGTTGGGATAAACCCA
*
22556 TCTAAGGTAACC
62 TCTAAGGCAACC
* * *
22568 TTAAAAAGATTGGGATAGATCTTGTCTAAGTCAACCTTTTAAAAAGGTTGGGATA
1 TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTTAAAAAGGTTGGGATA
22623 GACTTTGTCT
Statistics
Matches: 175, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
73 31 0.18
74 71 0.41
75 12 0.07
76 4 0.02
77 40 0.23
78 17 0.10
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (73 bp):
TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACCTTTTAAAAAGGTTGGGATAAACCCATCTA
AGGCAACC
Found at i:22542 original size:151 final size:153
Alignment explanation
Indices: 22339--22658 Score: 445
Period size: 151 Copynumber: 2.1 Consensus size: 153
22329 TTAAGGCCGT
* ** * * *
22339 CCTTTAAAAACGGTTGGG--ATAGGTCTT-CTCTAAGGCAACCTTTTAAAAAAGGTTGGGATAGA
1 CCTTTAAAAAAGGTTGGGATATACCTCTTGCTTTAAGGCAAACTTTTAAAAAAGGTTGGGATAAA
*
22401 CCCATCTAAGGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAA-TGCAACCTTTTAAAAAGAT
66 CCCATCTAAGGCAACCTTAAAAAGATTGGGATAGACCTTGTCTAAGT-CAACCTTTTAAAAAGAT
22465 TGAGATAAACCTTGTCTAAAGCAA
130 TGAGATAAACCTTGTCTAAAGCAA
22489 CC-TT-AAAAAGGTTGGGATATACCTCTTGCTTTAAGGCAAACTTTTAAAAAAGGTTGGGATAAA
1 CCTTTAAAAAAGGTTGGGATATACCTCTTGCTTTAAGGCAAACTTTTAAAAAAGGTTGGGATAAA
* * *
22552 CCCATCTAAGGTAACCTTAAAAAGATTGGGATAGATCTTGTCTAAGTCAACCTTTTAAAAAGGTT
66 CCCATCTAAGGCAACCTTAAAAAGATTGGGATAGACCTTGTCTAAGTCAACCTTTTAAAAAGATT
* * * * * *
22617 GGGATAGACTTTGTCTAAGGTAG
131 GAGATAAACCTTGTCTAAAGCAA
22640 CCTTTAAAAAAGGTTGGGA
1 CCTTTAAAAAAGGTTGGGA
22659 ACATCCATTA
Statistics
Matches: 148, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
148 11 0.07
149 2 0.01
150 9 0.06
151 110 0.74
152 3 0.02
153 13 0.09
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (153 bp):
CCTTTAAAAAAGGTTGGGATATACCTCTTGCTTTAAGGCAAACTTTTAAAAAAGGTTGGGATAAA
CCCATCTAAGGCAACCTTAAAAAGATTGGGATAGACCTTGTCTAAGTCAACCTTTTAAAAAGATT
GAGATAAACCTTGTCTAAAGCAA
Found at i:24634 original size:16 final size:15
Alignment explanation
Indices: 24607--24639 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
24597 ATAAATTTAA
24607 AATTAAATTAATTCT
1 AATTAAATTAATTCT
24622 AATTAAATATAATTCT
1 AATTAAAT-TAATTCT
24638 AA
1 AA
24640 ATGTTCTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
AATTAAATTAATTCT
Found at i:28906 original size:216 final size:217
Alignment explanation
Indices: 28388--36369 Score: 8254
Period size: 216 Copynumber: 37.3 Consensus size: 217
28378 AAGATGATCA
* ** *
28388 ATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTCATCATTTTGCAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
*
28453 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTT-TGAAACTT
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCG-AACTT
* * * *
28517 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGA-T-CCTCAAG------AC--GATCAATTCCT
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* * * * *
28572 TTCAGCAAAATTT-GGAATATTTC
195 TTGAGC-AATTTTCCGAACATTCC
* * * * * *
28595 ATGCTCGGCAAATCGCATCATTTGGTGTAAATAGTTTGTCCTTTTGCAAACAATTTTTGGTCGTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
28660 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTGGACGAACTTCCAAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * *
28725 TTAAACTTTTACGAGTTATTTTTTAACTTCAG-TCCCCTAAAGTAATAAACAAGATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
*
28789 TGACCAATTTTCCGAACATTCC
196 TGAGCAATTTTCCGAACATTCC
* * * * * *
28811 GTCCTTGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTC
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
28876 GAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * * * * * * * *
28941 TAAAACTTTTACTACTTCA-TTTATAGCATCGGA-TCCTTACAGTATTCAAGACGATCCATTGCT
131 TCAAACTTTTACGAGTT-ATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* * *
29004 TCGAGCAATTTTTCGAATATTCC
195 TTGAGCAATTTTCCGAACATTCC
* * *
29027 ATGCTCGGCAAATCGCATCATTT-ATCCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTT
1 ATGCTCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
29091 TGAATTAAAAACCTATTTACGTGAGAATTGTTTTTCTCTTTGTTCTTGGACGAACTTTCGAAATT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
29156 GTCAAA-TATTTACGAGTTAATTTT-TAACTTC-GATTCCCTAAAGTATTCAACAAGATCCATTC
130 GTCAAACT-TTTACGAGTT-ATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTC
* * * * *
29218 CTTAGAGTAGTTTTTCGAATATTCC
193 CTTTGAGCAATTTTCCGAACATTCC
* *
29243 ATGTTGGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * *
29308 GAATTAAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCTTAGACGAACTCCCGAACCTA
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * ** * * * * *
29373 TCAAACTTTTACTAGTTCTTTTATAACTTTGGA-TGCTTAAAGTATTCAAGACGATCTATT-CTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* *
29436 CCGAGCAATTTTCTGAACATTCC
196 -TGAGCAATTTTCCGAACATTCC
** * *
29459 ATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTGAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * *
29524 AAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTATTTGTTCTTGGACGAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * *
29588 TCAAACTTTTACGAGTTATTTTTTAACATCAG-TTCCCTAAAGTATTCAACAAGATCCATT-TTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* *
29651 TAGAGCAAATTTCTGAACATTCC
196 T-GAGCAATTTTCCGAACATTCC
* * * * * * *
29674 ATCCTTGGGGAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTATAGAAGTTTTGGACTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * *
29739 GAATTCAAAACTTATTTACGTTAGAATTGTCTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* ** *
29804 TCAAACTTTTACTAGTTATTTTATAACTTTGGA-T-CCTCAAG------AC--GATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* *
29859 TCAGCAATATTT-CGAATATTCC
196 TGAGCAAT-TTTCCGAACATTCC
* * * * * *
29881 ATGCTTGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCCTTTTGCAAACAAGTTTTGATCATT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
29946 GAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTTGTTCTTGGACGAACTTCCAAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * *
30011 TCAAA-ATTT---A--TATTTTTTAACTTCAG-TTCCCTAAAGTAATAAACAAGATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* * *
30069 TGAGTAATTTTTCGAACATCCC
196 TGAGCAATTTTCCGAACATTCC
* * * * * *
30091 GTCCTTGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTC
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
30156 GAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * * * * ** *
30221 TCAAACTTTTACTACTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGACGATAGATTGCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* * *
30285 CGAGCAATTTTTCGAATATTCC
196 TGAGCAATTTTCCGAACATTCC
* * * * *
30307 ATGCCCGGTAAATCGCATCATTT-ATCCTAAATAGTTTGTCATTTTGGAAACAAATTTTGGTCTT
1 ATGCTCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * *
30371 TGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAAATT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* ** *
30436 GTCAAACTTTTACGAGTTAATTTT-TAAATTC-GATTCCCTAATTTATTCAACCAGATCCATTCC
130 GTCAAACTTTTACGAGTT-ATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCC
** * *
30499 TCAGAGTAATTTTTCGAACATTCC
194 TTTGAGCAATTTTCCGAACATTCC
* *
30523 ATGCTGGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * *
30588 GAATTAAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCTTAGACGAACGTCCGAACCTA
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * ** * * * * *
30653 TCAAACTTTTACTAGTTCTTTTATAACTTTGGA-TGCTTAAAGTATTCAAGACGATCTATT-CTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* *
30716 CCGAGCAATTTTCTGAACATTCC
196 -TGAGCAATTTTCCGAACATTCC
*** * *
30739 ATGCTCCACAAATCGCATCATTTTGTCTAAATAATTTGTCATTTTGTAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * *
30804 AAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTATTTGTTCTTGGGCGAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * *
30868 TCAAACTTTTACAAGTTATTTTTTAACTTCAG-TTCCCTAAAGTATTCAACAAGATCCATT-TTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
*
30931 TAGAGCAATTTTCCTAACATTCC
196 T-GAGCAATTTTCCGAACATTCC
* * *
30954 ATCCTTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *
31019 GAATTCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAATTCCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * *
31084 TCAAACTTTTACTAATTCTTTTATAACTTCGGATT--CTCAAG------AC--GATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* * *
31139 TCAGCAATATTT-CGAATATTTC
196 TGAGCAAT-TTTCCGAACATTCC
* * * * * *
31161 ATGCTTGGCAAATCCCATCATTTGGTCTAAATAGTTTGTCCTTTTGCAAACAAGTTTTGGTCGTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * *
31226 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTATTGGTCGGAGTTCCAAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * *
31291 TCAAACTTTTACGAGTTATTTTTTCACTTCAG-TTCCCTAAAGTAATCAACAAAATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* *
31355 TGAGCAATTTTCCTAATATTCC
196 TGAGCAATTTTCCGAACATTCC
* * * * * * * *
31377 GTCCTTGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTATATACAAGTTTTGGTCTTC
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * * *
31442 GAATCAAAAACTTATTTACGCGAGTATTGTTTCTCTC--TGGTCATGGACAAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * ** * * * * *
31505 TCAAACTTTTACTACTTCTTTTATAGCTTTGGA-TCCTTACAGTATTCAAGACGATCCATTGCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* * ** *
31569 CGAGCATTTTTTTGAATATTCC
196 TGAGCAATTTTCCGAACATTCC
** * * *
31591 ATGCTCGACAAATCACATCATTT-ATCCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTT
1 ATGCTCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * * * *
31655 TGAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAAGTTTCGAACGT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* * * *** *
31720 GTCAAACTTTTACGACTTCTTTTATAACTTTC-G-TTCCTTAAAGTATTCAAGGTGATCCAGTCC
130 GTCAAACTTTTACGAGTTATTTTATAAC-TTCAGATTCCCTAAAGTATTCAACAAGATCCATTCC
* * *
31783 TTCGAGCAGTTTTCCAAACATTCC
194 TTTGAGCAATTTTCCGAACATTCC
* ** * * * *
31807 TTGCTCAAGAAATCCCATCATTTGGTCTAAATAGATTGTCA-TTTGTTAAACAGGTTTTGGTCGT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTT
* * *
31871 TGAATTTAAAACTTATTTACGTGACAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACCT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* * ** * * *
31936 GTCAAACTTTTACTAGTTCTTTTATAACTTTGGA-T-CCTCAAAGTATTCAAGACGATCTACTT-
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCT-AAAGTATTCAACAAGATCCA-TTC
**
31998 -TTTCGAGCAATTTTCTAAACATTCC
193 CTTT-GAGCAATTTTCCGAACATTCC
* * * * * * *
32023 ATGCCCGAGAAATCGCATCATTTGGTCTAAATAATTTGTCGTTTTGCAAACAAGTTTTTGCCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * *
32088 AAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTC
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
*
32152 TCAAACTTTTACGAGTTATTTTTTAACTTCA-ATTCCCTAAAGTATTCAACAAGATCCATT--TT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
*
32214 CTAGAGCAATATTCCGAACATTCC
196 -T-GAGCAATTTTCCGAACATTCC
* * *
32238 ATCCTTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TTTCTGGTCTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT-TGGTCTT
* *
32302 TGAATTAAAAAGTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* * * * *
32367 GTCAAACTTTTACTATTTCTTTTATAACTTCGGA-T-CCTCAAG------AC--GATCCATTCCT
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* *
32422 TTCAGCAATATTT-CGAATATTCC
195 TTGAGCAAT-TTTCCGAACATTCC
* * * * *
32445 ATGCT-GGGCAAATCGCATCATTTGGTCTAAATAGATTGTCCTTTTGCAAACAAGTTTTGATCGT
1 ATGCTCGGG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* *
32509 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTCCAAACTT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* * * *
32574 GTCAAAATTTTACGAGTTATTTTTTAACTTCAG-TTCCCTAAAGTAATCAACAAGATCCATTCAT
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* ** *
32638 TTAAGTTATTTTTCGAACA-TCC
195 TTGAGCAATTTTCCGAACATTCC
* * *
32660 -TGTCCTTGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCT
1 ATG--CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* * * *
32724 TCGAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTTGTTCTTGGACGAACTTTCGAACT
64 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACT
* * * * * * * * ** *
32789 TGGCAGACTTTTACTACTTCTTTTATAACTTCGGA-TCCTTAAAGTATTCAAGACTATCCATTGC
129 TGTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCC
* * *
32853 TTCGAGCAATTTTCTGAATATTCC
194 TTTGAGCAATTTTCCGAACATTCC
** * * * *
32877 ATGCTCGACAAATCGCATAATTT-ATCCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGACTT
1 ATGCTCGGGAAATCGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
32941 CGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTTGTTCTTGGATGAACTTTCGAAATT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* *
33004 GTCAAACTTTTACGAGTTAATTTT-TAACTTC-GATTCCCCAAAGTTTTCAACAAGATCCATTCC
130 GTCAAACTTTTACGAGTT-ATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCC
* * *
33067 TTAGAGCAATTTTTCGAGCATTCC
194 TTTGAGCAATTTTCCGAACATTCC
* *
33091 ATGCTGGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTATTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * *
33156 GAATTAAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCTTAGACGAACTTCCGAACCTA
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * ** * * * * *
33221 TCAAACTTTTACTAGTTCTTTTATAACTTTGGA-TGCTTAAAGTATTCAAGACGATCTATT-CTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
**
33284 TCGAGCAATTTTCTAAACATTCC
196 T-GAGCAATTTTCCGAACATTCC
* *** * * * *
33307 ATACTCCACAAATCGTATCATTTTGCCTAAATAATTTGTCATTTTGTAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * *
33372 AAATTAAAAACTTA-TTACGTGAGAATTGTTCCTTTATATGTTCTTGGACGAACTTTCGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* *
33436 TCAAACTTTTACGAGTTATTTTTTAACTTCAG-TTCCCTAAAGTATTCAACAAGATCCATT-TTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
33499 TAGAGCAATTTTCCGAACATTCC
196 T-GAGCAATTTTCCGAACATTCC
** * * *
33522 AACCTTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACACGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* ** *
33587 GAATTCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTAGAACTCG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * ** * *
33652 TCAAACTTTTACTAGTTCTTTTATAACTTTGGA-T-CCT----CA-T-GAC--GATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* ** *
33707 TCAATAATATTT-CGAATATTCC
196 TGAGCAAT-TTTCCGAACATTCC
* * * *
33729 ATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGCAAACAAGTTTTGGTCGTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * * *
33794 GAATTAAAAACTTATTTATGTGAGAATTGTTTTTGTCTTTGTTTTTGGACGGAGTTCCAAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * *
33859 TCAAACTTTTACGAGTTATTTTTTAACTTCAG-TTCCCTAAAGTAATCAACATGATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* *
33923 TGAGCAACTTTCTGAACATTCC
196 TGAGCAATTTTCCGAACATTCC
* * * * *
33945 ATCCTTGGGAAATCAG-ATCATTTGGTCTAAATAGTTTGCCATTTTGTATACAAGTTTTGGCCTT
1 ATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
34009 TGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTGTTTGTTCTTGGACGAACTTCTGAACCT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
* * * * *
34074 GTCAAACTTTTACGAGATATTTTCTAACTTCAG-TTCCCTAAAGTAAT-AAGAAGATCCATTCTT
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* *
34137 TTGAGCAATTTTTCGAACATTTC
195 TTGAGCAATTTTCCGAACATTCC
* * * **
34160 ATCCTTGGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTGTACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * **
34225 GAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTTGAACTTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * * *
34290 TCAAACTTTTACTAGTTCTTTTATAACTTCAGA-TCCTTAAAGTATTTAAGATGATCCATTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* ** *
34354 CGAGCAATTTTTTGAATATTCC
196 TGAGCAATTTTCCGAACATTCC
* ** * *
34376 ATGCTCGGCAAATCGCATCATTTGACCTAAATAGTTTGTNATTTTGCAAACAAGTTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * *
34441 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTTG-CCTCTGTATGAACTGT-CGAACT
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT-TGGACGAACT-TCCGAACT
* * *
34504 TGTCAAACTTTTACGAGTTATATTT-TAACTTC-GGTTCCTTATAGTATTCAACAAGATCCATTC
129 TGTCAAACTTTTACGAGTTAT-TTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTC
34567 CTTAT-AGCAATTTTCCGAGTATCATT--
193 CTT-TGAGCAATTTTCCGA--A-CATTCC
* * * **
34593 -TGGTC--TAAAT---A--GTTT-GTC---AT--TTTGT-A------AACA-AGTTTT-GGTCTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAAGTTTTGGTCTT
* ** * * **
34635 TGAATTAAAAACTTATTTACGAGAGAATTGCATCACTCTTGGTTAATGGACGAAC-TCCTGAACT
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCC-GAACT
* * * * * * * * *
34699 TGTCAAACTTTGAAGAGATCTTTTATAAC-TGA-ACTTCCTTAAAGTATTCAAGACGACCCATTC
129 TGTCAAACTTTTACGAGTTATTTTATAACTTCAGA-TTCCCTAAAGTATTCAACAAGATCCATTC
* *
34762 CTTTGAGCATTTTTCTGAACATTCC
193 CTTTGAGCAATTTTCCGAACATTCC
* * * *
34787 ATGCTCAGGAAATTGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTG
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * * *
34852 GAATTAAAAACTTATATGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAAGTTTCGAACGTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * * *** *
34917 TCAAACTTTTATGACTTCTTTTATAACTTCCG-TTCCTTAAAGTATTCAAGGCGATCCAGTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* * * *
34981 CGAGCAGTTTTGCAAACATTCC
196 TGAGCAATTTTCCGAACATTCC
* ** * * * *
35003 TTGCTCAAGAAATCACATCATTTGGTCTAAATAGATTGTCA-TTTGTTAAACAGGTTTTGGTCGT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTT
* * *
35067 TGAATTTAAATCTTATTTACGTGACAATTGTTTCTC-CTTTTGTTCTTGGACGAACTTCCGAAGC
65 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTTGTTCTTGGACGAACTTCCGAA-C
* ** * * * * *
35131 -TGTCAAACTTTTACTG-GTTCTTTTATAACTTTGGA-TCCTTAAAGTATTGAAGACGATCTATT
128 TTGTCAAACTTTTAC-GAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATT
* * **
35193 -TTTTCGTGCAATTTTCTAAACATTCC
192 CCTTT-GAGCAATTTTCCGAACATTCC
* * * * * * * * * * *
35219 ATGCTCGAGAAATCGCATCATTTGATGTAAATAATTTGCCGTTTAGCAAACAGGTTTTTGCCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
*
35284 AAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACGTT-CGAACTT
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC-TTCCGAACTT
* *
35347 CTCAAACTTTTACGAGTTATTTTTTAACTTCA-ATTCCCTAAAGTATTCAACAAGATCCATT--T
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
*
35409 TCTAGAGCAATTTTTCGAACATTCC
195 T-T-GAGCAATTTTCCGAACATTCC
* * * * * *
35434 ATCCTTGGGAAATTGCATCATTTGATCTAAATAGATTGTCATTTTGTAAACAAGTTCTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * *
35499 GAATGAAAAAGTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTC-AAGCTT
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAA-CTT
* * * * * **
35563 GTCAAACTTTTACTAGTTCTTTTATAACTTCTGA-TCCTTAAAGTATTCAAGACTATCCATTCCT
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* ** *
35627 TCGAGCAATTTTCTAAATATTCC
195 TTGAGCAATTTTCCGAACATTCC
* * * * ** * *
35650 ATGCTCGGCAAATCGCATCATTTGGCCTAAATGGTTTGTCATTCTAAAAAAAAATTTTGGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * *
35715 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TCTCTGTACAAACTTTCTAACTT
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT-TGGACGAACTTCCGAACTT
* * *
35779 GTCAAACTTTTACGAGTTATTTTTTAACTTC-GATTCCCTAAAGTGTTCAACAAGATCCATTCGT
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCT
* *
35843 TAGAGCAATTTTCTGAACATTCC
195 TTGAGCAATTTTCCGAACATTCC
* * * * * *
35866 GTGCTTGAGAAATCGCATCATTTGGTTTAAATATTTTGTCATTTTGTAAACAAGTTTTAGTCTTT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* ** * * *
35931 GAATT-AAAACTTATTTACGAGAGAATTGCATCACTCTTGGTTCATGGACGAAC-TCCTGAACTT
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCC-GAACTT
* * * * * * *
35994 GTCAAACTTTTAGGAGATCTTTTATAACTT-A-ACTTCCTTAAAGTATTCAAGACGACCCATTCC
130 GTCAAACTTTTACGAGTTATTTTATAACTTCAGA-TTCCCTAAAGTATTCAACAAGATCCATTCC
* *
36057 TTTGAG-TATTTTCTGAACATTCC
194 TTTGAGCAATTTTCCGAACATTCC
*** * * * * *
36080 ATGCTCAAAAAATTGCATCATTCGGTCTAAAGAGTTTGTCATTTCGTAAACAAGTTTTGGTCTTG
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * * *
36145 GAATAAAAAACTTATTTGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAACTTTCAAACGTG
66 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
* * * * *** *
36210 TCAAACTTTTACGACTTATTTTATAACTTC-CATTCCTTAAAGTATTGAAGGCGATCCAGTCCTT
131 TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
* * *
36274 CGAGCAGTTTTCCAAACATTCC
196 TGAGCAATTTTCCGAACATTCC
* ** * * * * *
36296 TTGCTCAAGAAATCACAGCATTTGGTCTAAATAGATTGTCATTTAT-TAAACAGGTTTTGGTCGT
1 ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT-TGTAAACAAGTTTTGGTCTT
36360 TGAATTAAAA
65 TGAATTAAAA
Statistics
Matches: 6450, Mismatches: 1107, Indels: 427
0.81 0.14 0.05
Matches are distributed among these distances:
192 4 0.00
193 2 0.00
194 6 0.00
195 118 0.02
196 6 0.00
197 5 0.00
200 1 0.00
201 14 0.00
202 10 0.00
203 9 0.00
205 2 0.00
206 9 0.00
207 769 0.12
208 52 0.01
209 17 0.00
210 148 0.02
211 5 0.00
212 1 0.00
213 4 0.00
214 447 0.07
215 1368 0.21
216 3395 0.53
217 50 0.01
218 5 0.00
219 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (217 bp):
ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTG
TCAAACTTTTACGAGTTATTTTATAACTTCAGATTCCCTAAAGTATTCAACAAGATCCATTCCTT
TGAGCAATTTTCCGAACATTCC
Found at i:29752 original size:431 final size:432
Alignment explanation
Indices: 28394--36369 Score: 8945
Period size: 431 Copynumber: 18.7 Consensus size: 432
28384 ATCAATGCTC
* ** *
28394 GGGAAATTGCATCATTTGGTCTAAATAGTTCATCATTTTGCAAACAAGTTTTGGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
28459 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTT-GAAACTTGTCAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCG-AACTTGTCAAA
* * *
28523 CTTTTACGAGTTCTTTTATAACTTCGGATCC---------TCAAGACGATCAATTCCTTTC-AGC
130 CTTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGC
* * * * * * * *
28578 AAAATTT-GGAATATTTCATGCTCGGCAAATCGCATCATTTGGTGTAAATAGTTTGTCCTTTTGC
194 -AATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGC
* * *
28642 AAACAATTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTTG
258 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * * * * *
28707 GACGAACTTCCAAACTTGTTAAACTTTTACGAGTTATTTTTTAACTTCAGTCCCCTAAAGTAATA
323 GACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTC
* * *
28772 AACAAGATCCATTCCTTT-GACCAATTTTCCGAACATTCCGTCCTT
388 AACAAGATCCATT-CTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * * *
28817 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTCGAATCA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
*
28882 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTAAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * * * * *
28947 TTTTACTACTTCATTTATAGCATCGGATCCTTACAGTATTCAAGACGATCCATTGCTTCGAGCAA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
29012 TTTT-TCGAATATTCCATGCTCGGCAAATCGCATCATTT-ATCCTAAATAGTTTGTCATTTTGCA
196 TTTTCT-GAACATTCCATGCTCGACAAATCGCATCATTTGGT-CTAAATAATTTGTCATTTTGCA
* *
29075 AACAAGTTTTGGTCTTTGAATTAAAAACCTATTTACGTGAGAATTGTTTTTCTCTTTGTTCTTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* *
29140 ACGAACTTTCGAAATTGTCAAA-TATTTACGAGTTAATTTTTAACTTC-GATTCCCTAAAGTATT
324 ACGAACTTTCGAACTTGTCAAACT-TTTACGAGTTATTTTTTAACTTCAG-TTCCCTAAAGTATT
* * * * *
29203 CAACAAGATCCATTCCTTAGAGTAGTTTT-TCGAATATTCCAT-GTT
387 CAACAAGATCCATTCTTTAGAGCAATTTTCT-GAACATTCCATCCTT
29248 GGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
1 -GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * * ** * *
29313 AAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCTTAGACGAACTCCCGAACCTATCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
29378 CTTTTACTAGTTCTTTTATAACTTTGGATGCTTAAAGTATTCAAGACGATCTATT-CTTCCGAGC
130 CTTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTT-CGAGC
**
29442 AATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTG
194 AATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* *
29507 AACAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTATTTGTTCTTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
*
29571 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACATCAGTTCCCTAAAGTATTCA
324 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCA
* *
29636 ACAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCCATCCTT
389 ACAAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * * * * *
29680 GGGGAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTATAGAAGTTTTGGACTTTGAATTC
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* *
29745 AAAACTTATTTACGTTAGAATTGTCTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
*
29810 TTTTACTAGTTATTTTATAACTTTGGATCC---------TCAAGACGATCCATTCCTTTC-AGCA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * * * *
29865 ATATTTC-GAATATTCCATGCTTGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCCTTTTGCA
195 AT-TTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* * *
29929 AACAAGTTTTGATCATTGAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTTGTTCTTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * *
29994 ACGAACTTCCAAACTTGTCAAA-ATTT---A--TATTTTTTAACTTCAGTTCCCTAAAGTAATAA
324 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCA
* * *
30053 ACAAGATCCATTCCTTT-GAGTAATTTT-TCGAACATCCCGTCCTT
389 ACAAGATCCATT-CTTTAGAGCAATTTTCT-GAACATTCCATCCTT
* * * *
30097 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTCGAATCA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
30162 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * ** *
30227 TTTTACTACTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACGATAGATTGCTTCGAGCAA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * ** * * *
30292 TTTT-TCGAATATTCCATGCCCGGTAAATCGCATCATTT-ATCCTAAATAGTTTGTCATTTTGGA
196 TTTTCT-GAACATTCCATGCTCGACAAATCGCATCATTTGGT-CTAAATAATTTGTCATTTTGCA
* *
30355 AACAAATTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * **
30420 ACGAACTTTCGAAATTGTCAAACTTTTACGAGTTAATTTTTAAATTC-GATTCCCTAATTTATTC
324 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAG-TTCCCTAAAGTATTC
* * * * * *
30484 AACCAGATCCATTCCTCAGAGTAATTTT-TCGAACATTCCATGCTG
388 AACAAGATCCATTCTTTAGAGCAATTTTCT-GAACATTCCATCCTT
*
30529 GGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * * *
30594 AAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCTTAGACGAACGTCCGAACCTATCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* *
30659 TTTTACTAGTTCTTTTATAACTTTGGATGCTTAAAGTATTCAAGACGATCTATT-CTTCCGAGCA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTT-CGAGCA
* * *
30723 ATTTTCTGAACATTCCATGCTCCACAAATCGCATCATTTTGTCTAAATAATTTGTCATTTTGTAA
195 ATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCAA
* * *
30788 ACAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTATTTGTTCTTGGG
260 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
*
30852 CGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCAA
325 CGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCAA
*
30917 CAAGATCCATTTTTTAGAGCAATTTTCCT-AACATTCCATCCTT
390 CAAGATCCATTCTTTAGAGCAATTTT-CTGAACATTCCATCCTT
* *
30960 GGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTC
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* *
31025 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAATTCCGAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * *
31090 TTTTACTAATTCTTTTATAACTTCGGA----T----T-CTCAAGACGATCCATTCCTTTC-AGCA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * * * * * *
31145 ATATTTC-GAATATTTCATGCTTGGCAAATCCCATCATTTGGTCTAAATAGTTTGTCCTTTTGCA
195 AT-TTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* *
31209 AACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTATTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * * * *
31274 TCGGAGTTCCAAACTTGTCAAACTTTTACGAGTTATTTTTTCACTTCAGTTCCCTAAAGTAATCA
324 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCA
* * *
31339 ACAAAATCCATTCCTTT-GAGCAATTTTCCT-AATATTCCGTCCTT
389 ACAAGATCCATT-CTTTAGAGCAATTTT-CTGAACATTCCATCCTT
* * * * * *
31383 GAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTATATACAAGTTTTGGTCTTCGAATCA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * *
31448 AAAACTTATTTACGCGAGTATTGTTTCTCTC--TGGTCATGGACAAACTTTCGAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * * *
31511 TTTTACTACTTCTTTTATAGCTTTGGATCCTTACAGTATTCAAGACGATCCATTGCTTCGAGCAT
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
31576 TTTTTTGAATATTCCATGCTCGACAAATCACATCATTT-ATCCTAAATAGTTTGTCATTTTGCAA
196 TTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGT-CTAAATAATTTGTCATTTTGCAA
* *
31640 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGA
260 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
* * * * * * *
31705 TGAAGTTTCGAACGTGTCAAACTTTTACGACTTCTTTTATAACTTTC-GTTCCTTAAAGTATTCA
325 CGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAAC-TTCAGTTCCCTAAAGTATTCA
*** * * * * ** * * *
31769 AGGTGATCCAGTCCTTCGAGCAGTTTTCCAAACATTCCTTGCTC
389 ACAAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
** * * * *
31813 AAGAAATCCCATCATTTGGTCTAAATAGATTGTCA-TTTGTTAAACAGGTTTTGGTCGTTGAATT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGTTTTGGTCTTTGAATT
* * * *
31877 TAAAACTTATTTACGTGACAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACCTGTCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
31942 CTTTTACTAGTTCTTTTATAACTTTGGATCCTCAAAGTATTCAAGACGATCTACTT-TTTCGAGC
130 CTTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGC
* * * *
32006 AATTTTCTAAACATTCCATGCCCGAGAAATCGCATCATTTGGTCTAAATAATTTGTCGTTTTGCA
194 AATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* * *
32071 AACAAGTTTTTGCCTTTAAATTAAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* *
32135 ACGAACTTTCGAACTTCTCAAACTTTTACGAGTTATTTTTTAACTTCAATTCCCTAAAGTATTCA
324 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCA
* *
32200 ACAAGATCCATT-TTCTAGAGCAATATTCCGAACATTCCATCCTT
389 ACAAGATCCATTCTT-TAGAGCAATTTTCTGAACATTCCATCCTT
*
32244 GGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TTTCTGGTCTTTGAATT
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT-TGGTCTTTGAATT
*
32308 AAAAAGTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC-TTCTGAACTTGTCAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAA
* *
32372 ACTTTTACTATTTCTTTTATAACTTCGGATCC---------TCAAGACGATCCATTCCTTTC-AG
129 ACTTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAG
* * * *
32427 CAATATTTC-GAATATTCCATGCTGGGCAAATCGCATCATTTGGTCTAAATAGA-TTGTCCTTTT
193 CAAT-TTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATA-ATTTGTCATTTT
* *
32490 GCAAACAAGTTTTGATCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
256 GCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
* * * * *
32555 TGGATGAACTTCCAAACTTGTCAAAATTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTAA
321 TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTAT
** *
32620 TCAACAAGATCCATTCATTTA-AGTTATTTT-TCGAACA-TCCTGTCCTT
386 TCAACAAGATCCATTC-TTTAGAGCAATTTTCT-GAACATTCC-ATCCTT
* * * *
32667 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTCGAATCA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * *
32732 AAAACTTATTTACGTGAGAATTGTTTCTCTTTTTGTTCTTGGACGAACTTTCGAACTTGGCAGAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * *
32797 TTTTACTACTTCTTTTATAACTTCGGATCCTTAAAGTATTCAAGACTATCCATTGCTTCGAGCAA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
32862 TTTTCTGAATATTCCATGCTCGACAAATCGCATAATTT-ATCCTAAATAGTTTGTCATTTTGCAA
196 TTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGT-CTAAATAATTTGTCATTTTGCAA
* *
32926 ACAAGTTTTGGACTTCGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTTGTTCTTGGA
260 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
* * * * *
32989 TGAACTTTCGAAATTGTCAAACTTTTACGAGTTAATTTTTAACTTC-GATTCCCCAAAGTTTTCA
325 CGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAG-TTCCCTAAAGTATTCA
* * * *
33053 ACAAGATCCATTCCTTAGAGCAATTTT-TCGAGCATTCCATGCTG
389 ACAAGATCCATTCTTTAGAGCAATTTTCT-GAACATTCCATCCTT
*
33097 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTATTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
33162 AAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCTTAGACGAACTTCCGAACCTATCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * *
33227 TTTTACTAGTTCTTTTATAACTTTGGATGCTTAAAGTATTCAAGACGATCTATTCTTTCGAGCAA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * *
33292 TTTTCTAAACATTCCATACTCCACAAATCGTATCATTTTGCCTAAATAATTTGTCATTTTGTAAA
196 TTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCAAA
* * * * *
33357 CAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGAGAATTGTTCCTTTATATGTTCTTGGAC
261 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAC
33421 GAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCAAC
326 GAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCAAC
* * *
33486 AAGATCCATTTTTTAGAGCAATTTTCCGAACATTCCAACCTT
391 AAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * *
33528 GGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACACGTTTTGGTCTTTGAATTC
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* *
33593 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTAGAACTCGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* **
33658 TTTTACTAGTTCTTTTATAACTTTGGATCC---------TCATGACGATCCATTCCTTTC-AATA
131 TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * * *
33713 ATATTTC-GAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGCA
195 AT-TTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* * * * *
33777 AACAAGTTTTGGTCGTTGAATTAAAAACTTATTTATGTGAGAATTGTTTTTGTCTTTGTTTTTGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * *
33842 ACGGAGTTCCAAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTAATCA
324 ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCA
* *
33907 ACATGATCCATTCCTTT-GAGCAACTTTCTGAACATTCCATCCTT
389 ACAAGATCCATT-CTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * *
33951 GGGAAATCAG-ATCATTTGGTCTAAATAGTTTGCCATTTTGTATACAAGTTTTGGCCTTTGAATT
1 GGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT
* * *
34015 AAAAACTTATTTACATGAGAATTGTTTCTCTGTTTGTTCTTGGACGAAC-TTCTGAACCTGTCAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * * ** * * * * * *
34079 ACTTTTACGAGATATTTTCTAACTTCAGTTCCCTAAAGTAAT-AAGAAGATCCATTCTTTTGAGC
129 ACTTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * ** *
34143 AATTTT-TCGAACATTTCATCCTTGGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGT
194 AATTTTCT-GAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGC
** *
34207 GTACAAGTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTG
258 AAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * * * * * * *
34272 GATGAACTTTTGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCAGATCCTTAAAGTATTT
323 GACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTC
* * * * * * * *
34337 AAGATGATCCATTCCTTCGAGCAATTTTTTGAATATTCCATGCTC
388 AACAAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
* ** * *
34382 GGCAAATCGCATCATTTGACCTAAATAGTTTGTNATTTTGCAAACAAGTTTTGGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * *
34447 AAAACTTATTTACGTGAGAATTGTTTCTCCCTTTG-CCTCTGTATGAACTGTCGAACTTGTCAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT-TGGACGAACTTTCGAACTTGTCAAA
* * * * * * * **
34511 CTTTTACGAGTTATATTT-TAACTTCGGTTCCTTATAGTATTCAACAAGATCCATTCCTTATAGC
130 CTTTTACTAGTTCT-TTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * *
34575 AA-----T-----TT---T-C-CG----A--GTATCATTTGGTCTAAATAGTTTGTCATTTTGTA
194 AATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* ** * * **
34619 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGAGAGAATTGCATCACTCTTGGTTAATGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * * * ** * *
34684 ACGAAC-TCCTGAACTTGTCAAACTTTGAAGAGATCTTTTATAACTGAACTTCCTTAAAGTATTC
324 ACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTC
* * * * * *
34748 AAGACGACCCATTCCTTT-GAGCATTTTTCTGAACATTCCATGCTC
388 AACAAGATCCATT-CTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * * *
34793 AGGAAATTGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTGGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * * *
34858 AAAACTTATATGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAAGTTTCGAACGTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* ** * * *
34923 TTTTA-TGACTTCTTTTATAACTTCCGTTCCTTAAAGTATTCAAGGCGATCCAGTCCTTCGAGCA
131 TTTTACT-AGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
34987 GTTTTGC-AAACATTCCTTGCTCAAGAAATCACATCATTTGGTCTAAATAGA-TTGTCA-TTTGT
195 ATTTT-CTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATA-ATTTGTCATTTTG-
* * * * * *
35049 TAAACAGGTTTTGGTCGTTGAATTTAAATCTTATTTACGTGACAATTGTTTCTC-CTTTTGTTCT
257 CAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTTGTTCT
* * * ** * *
35113 TGGACGAACTTCCGAAGC-TGTCAAACTTTTACTG-GTTCTTTTATAACTTTGGATCCTTAAAGT
321 TGGACGAACTTTCGAA-CTTGTCAAACTTTTAC-GAGTTATTTTTTAACTTCAGTTCCCTAAAGT
* * * * * * * * * *
35176 ATTGAAGACGATCTATTTTTTCGTGCAATTTTCTAAACATTCCATGCTC
384 ATTCAACAAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * * * * * * * * * * *
35225 GAGAAATCGCATCATTTGATGTAAATAATTTGCCGTTTAGCAAACAGGTTTTTGCCTTTAAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* *
35290 AAAACTTA-TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACGTTCGAACTTCTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * ** * * *
35354 TTTTACGAGTTATTTTTTAAC-TTCAATTCCCTAAAGTATTCAACAAGATCCATT--TTCTAGAG
131 TTTTACTAGTTCTTTTATAACTTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTC--GAG
* * ** * *
35416 CAATTTT-TCGAACATTCCATCCTTGGGAAATTGCATCATTTGATCTAAATAGA-TTGTCATTTT
193 CAATTTTCT-GAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATA-ATTTGTCATTTT
* * * *
35479 GTAAACAAGTTCTGGTCTTTGAATGAAAAAGTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
256 GCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
* * * * * * *
35544 TGGATGAACTTTC-AAGCTTGTCAAACTTTTACTAGTTCTTTTATAACTTCTGATCCTTAAAGTA
321 TGGACGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTA
* ** * * * * * *
35608 TTCAAGACTATCCATTCCTTCGAGCAATTTTCTAAATATTCCATGCTC
385 TTCAACAAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
* * * * ** * *
35656 GGCAAATCGCATCATTTGGCCTAAATGGTTTGTCATTCTAAAAAAAAATTTTGGTCTTTGAATTA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * *
35721 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TCTCTGTACAAACTTTCTAACTTGTCAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT-TGGACGAACTTTCGAACTTGTCAAA
* * * * * * * * * *
35785 CTTTTACGAGTTATTTTTTAAC-TTCGATTCCCTAAAGTGTTCAACAAGATCCATTCGTTAGAGC
130 CTTTTACTAGTTCTTTTATAACTTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
35849 AATTTTCTGAACATTCCGTGCTTGAGAAATCGCATCATTTGGTTTAAATATTTTGTCATTTTGTA
194 AATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCA
* * ** * * *
35914 AACAAGTTTTAGTCTTTGAATT-AAAACTTATTTACGAGAGAATTGCATCACTCTTGGTTCATGG
259 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
* * * * * * * *
35978 ACGAAC-TCCTGAACTTGTCAAACTTTTAGGAGATCTTTTATAACTTAACTTCCTTAAAGTATTC
324 ACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTC
* * * * * *
36042 AAGACGACCCATTCCTTT-GAG-TATTTTCTGAACATTCCATGCTC
388 AACAAGATCCATT-CTTTAGAGCAATTTTCTGAACATTCCATCCTT
*** * * * * * *
36086 AAAAAATTGCATCATTCGGTCTAAAGAGTTTGTCATTTCGTAAACAAGTTTTGGTCTTGGAATAA
1 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
* * * * *
36151 AAAACTTATTTGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAACTTTCAAACGTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * ** * * *
36216 TTTTACGACTTATTTTATAAC-TTCCATTCCTTAAAGTATTGAAGGCGATCCAGTCCTTCGAGCA
131 TTTTACTAGTTCTTTTATAACTTTGGA-TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* ** * * * * * *
36280 GTTTTCCAAACATTCCTTGCTCAAGAAATCACAGCATTTGGTCTAAATAGA-TTGTCATTTAT-T
195 ATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATA-ATTTGTCATTT-TGC
* *
36343 AAACAGGTTTTGGTCGTTGAATTAAAA
258 AAACAAGTTTTGGTCTTTGAATTAAAA
Statistics
Matches: 6464, Mismatches: 888, Indels: 394
0.83 0.11 0.05
Matches are distributed among these distances:
410 4 0.00
411 329 0.05
412 5 0.00
413 1 0.00
416 1 0.00
417 210 0.03
418 4 0.00
419 2 0.00
421 55 0.01
422 389 0.06
423 952 0.15
424 21 0.00
425 11 0.00
426 149 0.02
427 4 0.00
428 1 0.00
429 36 0.01
430 914 0.14
431 1873 0.29
432 1487 0.23
433 14 0.00
434 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (432 bp):
GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTTACTAGTTCTTTTATAACTTTGGATCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTCTGAACATTCCATGCTCGACAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGCAAA
CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAC
GAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTATTCAAC
AAGATCCATTCTTTAGAGCAATTTTCTGAACATTCCATCCTT
Found at i:29807 original size:647 final size:645
Alignment explanation
Indices: 28391--36369 Score: 8755
Period size: 647 Copynumber: 12.4 Consensus size: 645
28381 ATGATCAATG
** *
28391 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTCATCATTTTGCAAACAAGTTTTGGTCTTTGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
28456 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTT-GAAACTTGTC
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCG-AACTTGTC
* *
28520 AAACTTTTACGAGTTCTTTTATAACTTCGGA-T-CCTCAAG------ACGATCAATTCCTTTC-A
130 AAACTTTTACGAGTTCTTTTATAACTTC-GATTCCCTAAAGTATTCAACGATCCATTCC-TTCGA
** * * * *
28576 GCAAAATTTGGAATATTTCATGCTCGGCAAATCGCATCATTTGGTGTAAATAGTTTGTCCTTTTG
193 GCAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
28641 CAAACAATTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTCTTCTT
258 CAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT
* * * * *
28706 GGACGAACTTCCAAACTTGTTAAACTTTTACGAGTTATTTTTTAACTTCAG-TCCCCTAAAGTAA
323 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGAT-CCCTAAAGTAT
* * * * * * * * *
28770 TAAACAAGATCCATTCCTTTGACCAATTTTCCGAACATTCCGTCCTTGGGAAATCACATCATTTG
387 TCAACAAGATCCATT-CTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * *
28835 GTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTCGAATCAAAAACTTATTTACGTGAG
451 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * *
28900 AATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTAAAACTTTTACTACTTCA-TTTA
516 AATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTT-ATTTTA
* * * * * * * ** * * *
28964 TAGCATCGGATCCTTACAGTATTCAAGACGATCCATTGCTTCGAGC-AATTTTTCGAATATTCCA
580 TAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCT-GAACATTCCA
*
29028 TG
644 TC
* * * *
29030 CTCGGCAAATCGCATCATTT-ATCCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGA
1 CTCGGGAAATTGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * *
29094 ATTAAAAACCTATTTACGTGAGAATTGTTTTTCTCTTTGTTCTTGGACGAACTTTCGAAATTGTC
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC
* *
29159 AAA-TATTTACGAGTTAATTTT-TAACTTCGATTCCCTAAAGTATTCAACAAGATCCATTCCTTA
130 AAACT-TTTACGAGTT-CTTTTATAACTTCGATTCCCTAAAGTATTCAAC--GATCCATTCCTTC
* * * * *
29222 GAGTAGTTTTTCGAATATTCCATGTTGGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
191 GAGCAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
29287 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTC
256 TGCAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTC
* * * * * * * * *
29352 TTAGACGAACTCCCGAACCTATCAAACTTTTACTAGTTCTTTTATAACTTTGGATGCTTAAAGTA
321 TTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTA
* * * *
29417 TTCAAGACGATCTATTCTTCCGAGCAATTTTCTGAACATTCCATGCTCGACAAATCGCATCATTT
386 TTCAACAAGATCCATTCTT-CGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTT
* * *
29482 GGTCTAAATAATTTGTCATTTTGTGAACAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGA
450 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* *
29546 GAATTGTTTCTCTATTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTT
515 GAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTA
* *
29611 TAACATCAGTTCCCTAAAGTATTCAACAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCCAT
580 TAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCCAT
29676 C
645 C
* * * * *
29677 CTTGGGGAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTATAGAAGTTTTGGACTTTGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
29742 TTCAAAACTTATTTACGTTAGAATTGTCTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* * * *
29807 AACTTTTACTAGTTATTTTATAACTTTGGA-T-CCTCAAG------ACGATCCATTCCTTTC-AG
131 AACTTTTACGAGTTCTTTTATAAC-TTCGATTCCCTAAAGTATTCAACGATCCATTCC-TTCGAG
* * *
29863 CAATATTTCGAATATTCCATGCTTGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCCTTTTGC
194 CAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGC
* * *
29928 AAACAAGTTTTGATCATTGAATTAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTTGTTCTTG
259 AAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * * * * * *
29993 GACGAACTTCCAAACTTGTCAAA-ATTT---A--TATTTTTTAACTTCAGTTCCCTAAAGTAATA
324 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTATTC
* * * * * * * *
30052 AACAAGATCCATTCCTTTGAGTAATTTT-TCGAACATCCCGTCCTTGGGAAATCACATCATTTGG
389 AACAAGATCCATT-CTTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAAATCGCATCATTTGG
* * *
30116 TCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTCGAATCAAAAACTTATTTACGTGAGA
452 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * *
30181 ATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACTACTTCTTTTATA
517 ATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATA
* * * * ** ** * * *
30246 ACTTCGGATCCTTAAAGTATTCAAGACGATAGATTGCTTCGAGC-AATTTTTCGAATATTCCATG
582 ACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCT-GAACATTCCAT-
30310 C
645 C
* * * * *
30311 C-CGGTAAATCGCATCATTT-ATCCTAAATAGTTTGTCATTTTGGAAACAAATTTTGGTCTTTGA
1 CTCGGGAAATTGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* *
30374 ATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAAATTGTC
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC
* * **
30439 AAACTTTTACGAGTTAATTTT-TAAATTCGATTCCCTAATTTATTCAACCAGATCCATTCC-TCA
130 AAACTTTTACGAGTT-CTTTTATAACTTCGATTCCCTAAAGTATTCAA-C-GATCCATTCCTTC-
* * * * *
30502 GAGTAATTTTTCGAACATTCCATGCTGGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTT
191 GAGCAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
30567 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTC
256 TGCAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTC
* * * * * * * * *
30632 TTAGACGAACGTCCGAACCTATCAAACTTTTACTAGTTCTTTTATAACTTTGGATGCTTAAAGTA
321 TTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTA
* * * * *
30697 TTCAAGACGATCTATTCTTCCGAGCAATTTTCTGAACATTCCATGCTCCACAAATCGCATCATTT
386 TTCAACAAGATCCATTCTT-CGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTT
* * *
30762 TGTCTAAATAATTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGA
450 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * *
30826 GAATTGTTTCTCTATTTGTTCTTGGGCGAACTTTCGAACTTGTCAAACTTTTACAAGTTATTTTT
515 GAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTA
* *
30891 TAACTTCAGTTCCCTAAAGTATTCAACAAGATCCATTTTTTAGAGCAATTTTCCT-AACATTCCA
580 TAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTT-CTGAACATTCCA
30955 TC
644 TC
*
30957 CTTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
31022 TTCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAATTCCGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* * *
31087 AACTTTTACTAATTCTTTTATAACTTCGGATT--CTCAAG------ACGATCCATTCCTTTC-AG
131 AACTTTTACGAGTTCTTTTATAACTTC-GATTCCCTAAAGTATTCAACGATCCATTCC-TTCGAG
* * * * *
31143 CAATATTTCGAATATTTCATGCTTGGCAAATCCCATCATTTGGTCTAAATAGTTTGTCCTTTTGC
194 CAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGC
*
31208 AAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTATTG
259 AAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * * * * * * * *
31273 GTCGGAGTTCCAAACTTGTCAAACTTTTACGAGTTATTTTTTCACTTCAGTTCCCTAAAGTAATC
324 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTATTC
* * * * * * *
31338 AACAAAATCCATTCCTTTGAGCAATTTTCCT-AATATTCCGTCCTTGAGAAATCACATCATTTGG
389 AACAAGATCCATT-CTTCGAGCAATTTT-CTGAACATTCCATGCTCGAGAAATCGCATCATTTGG
* * * * * *
31402 TCTAAATAGTTTGTCATTTTATATACAAGTTTTGGTCTTCGAATCAAAAACTTATTTACGCGAGT
452 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * * * *
31467 ATTGTTTCTCTC--TGGTCATGGACAAACTTTCGAACTTGTCAAACTTTTACTACTTCTTTTATA
517 ATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATA
* ** * * * * ** * ** * * *
31530 GCTTTGGATCCTTACAGTATTCAAGACGATCCATTGCTTCGAGCATTTTTTTGAATATTCCATG
582 ACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCCATC
** ** * *
31594 CTCGACAAATCACATCATTT-ATCCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGA
1 CTCGGGAAATTGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * * * *
31658 ATTAAAAACTTATTTGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAAGTTTCGAACGTGTC
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC
* * * *
31723 AAACTTTTACGACTTCTTTTATAACTTTCG-TTCCTTAAAGTATTCAAGGTGATCCAGTCCTTCG
130 AAACTTTTACGAGTTCTTTTATAAC-TTCGATTCCCTAAAGTATTCAA--CGATCCATTCCTTCG
* * * * * * * *
31787 AGCAGTTTTCCAAACATTCCTTGCTCAAG-AAATCCCATCATTTGGTCTAAATAGATTGTCA-TT
192 AGCAATTTTTCGAATATTCCATGCTC-GGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
31850 TGTTAAACAGGTTTTGGTCGTTGAATTTAAAACTTATTTACGTGACAATTGTTTCTCTCTTTGTT
256 TG-CAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTT
* * * *
31915 CTTGGACGAACTTCCGAACCTGTCAAACTTTTACTAGTTCTTTTATAACTTTGGAT-CCTCAAAG
320 CTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCT-AAAG
* * * * * *
31979 TATTCAAGACGATCTACTTTTTCGAGCAATTTTCTAAACATTCCATGCCCGAGAAATCGCATCAT
384 TATTCAACAAGATCCA-TTCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCAT
* * * * * *
32044 TTGGTCTAAATAATTTGTCGTTTTGCAAACAAGTTTTTGCCTTTAAATTAAAAACTTA-TTACGT
448 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
*
32108 GAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTCTCAAACTTTTACGAGTTATTT
513 GAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTT
* * * * *
32173 TTTAACTTCAATTCCCTAAAGTATTCAACAAGATCCATTTTCTAGAGC-AATATTCCGAACATTC
578 TATAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAAT-TTCTGAACATTC
32237 CATC
642 CATC
*
32241 CTTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TTTCTGGTCTTTGA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT-TGGTCTTTGA
*
32305 ATTAAAAAGTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC-TTCTGAACTTGT
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGT
* * *
32369 CAAACTTTTACTATTTCTTTTATAACTTCGGA-T-CCTCAAG------ACGATCCATTCCTTTC-
129 CAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCCTAAAGTATTCAACGATCCATTCC-TTCG
* * * *
32425 AGCAATATTTCGAATATTCCATGCTGGGCAAATCGCATCATTTGGTCTAAATAGATTGTCCTTTT
192 AGCAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
*
32490 GCAAACAAGTTTTGATCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
257 GCAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
* * * * * * *
32555 TGGATGAACTTCCAAACTTGTCAAAATTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTAA
322 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTAT
** ** * * *
32620 TCAACAAGATCCATTCATTTAAGTTATTTT-TCGAACA-TCC-TGTCCTTGGGAAATCACATCAT
387 TCAACAAGATCCATTC-TTCGAGCAATTTTCT-GAACATTCCATG--CTCGAGAAATCGCATCAT
* * *
32682 TTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTTCGAATCAAAAACTTATTTACGT
448 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
* * * * * *
32747 GAGAATTGTTTCTCTTTTTGTTCTTGGACGAACTTTCGAACTTGGCAGACTTTTACTACTTCTTT
513 GAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTT
* * * ** ** * * *
32812 TATAACTTCGGATCCTTAAAGTATTCAAGACTATCCATTGCTTCGAGCAATTTTCTGAATATTCC
578 TATAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCC
*
32877 ATG
643 ATC
** * * * * * *
32880 CTCGACAAATCGCATAATTT-ATCCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGACTTCGA
1 CTCGGGAAATTGCATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* *
32944 ATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTTGTTCTTGGATGAACTTTCGAAATTGTC
65 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTC
* * * *
33007 AAACTTTTACGAGTTAATTTT-TAACTTCGATTCCCCAAAGTTTTCAACAAGATCCATTCCTTAG
130 AAACTTTTACGAGTT-CTTTTATAACTTCGATTCCCTAAAGTATTCAAC--GATCCATTCCTTCG
** * *
33071 AGCAATTTTTCGAGCATTCCATGCTGGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
192 AGCAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* ** * *
33136 GTAAACAAGTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCACTCTTTGTTCT
257 GCAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
* * * * * * * *
33201 TAGACGAACTTCCGAACCTATCAAACTTTTACTAGTTCTTTTATAACTTTGGATGCTTAAAGTAT
322 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTAT
* * * * * * * * *
33266 TCAAGACGATCTATTCTTTCGAGCAATTTTCTAAACATTCCATACTCCACAAATCGTATCATTTT
387 TCAACAAGATCCATTC-TTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTG
* * *
33331 GCCTAAATAATTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTA-TTACGTGAG
451 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG
* * * * *
33395 AATTGTTCCTTTATATGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTTT
516 AATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTAT
* * * *
33460 AACTTCAGTTCCCTAAAGTATTCAACAAGATCCATTTTTTAGAGCAATTTTCCGAACATTCCAAC
581 AACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCCATC
* *
33525 CTTGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACACGTTTTGGTCTTTGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
33590 TTCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTAGAACTCGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * *
33655 AACTTTTACTAGTTCTTTTATAACTTTGGA-T-CCT----CA-T-GACGATCCATTCCTTTC-AA
131 AACTTTTACGAGTTCTTTTATAAC-TTCGATTCCCTAAAGTATTCAACGATCCATTCC-TTCGAG
* * *
33711 TAATATTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGC
194 CAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGC
* * * *
33776 AAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTATGTGAGAATTGTTTTTGTCTTTGTTTTTG
259 AAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
* * * * * * *
33841 GACGGAGTTCCAAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTCAGTTCCCTAAAGTAATC
324 GACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTATTC
* * * * * *
33906 AACATGATCCATTCCTTTGAGCAACTTTCTGAACATTCCATCCTTGGGAAATCAG-ATCATTTGG
389 AACAAGATCCATT-CTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATC-GCATCATTTGG
* * * *
33970 TCTAAATAGTTTGCCATTTTGTATACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACATGAGA
452 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGA
* * * *
34035 ATTGTTTCTCTGTTTGTTCTTGGACGAAC-TTCTGAACCTGTCAAACTTTTACGAGATATTTTCT
517 ATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTATTTTAT
* * *
34099 AACTTCAGTTCCCTAAAGTAAT-AAGAAGATCCATTCTTTT-GAGC-AATTTTTCGAACATTTCA
581 AACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATT-TTTTAGAGCAAATTTCT-GAACATTCCA
34161 TC
644 TC
* * * **
34163 CTTGGGAAATCGCATCATTTGGTCTAAATAATTTGTCATTTTGTGTACAAGTTTTGGTCTTTGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
34228 TTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTTGAACTTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* * * *
34293 AACTTTTACTAGTTCTTTTATAACTTCAGA-TCCTTAAAGTATTTAAGATGATCCATTCCTTCGA
131 AACTTTTACGAGTTCTTTTATAACTTC-GATTCCCTAAAGTA-TTCA-ACGATCCATTCCTTCGA
* ** *
34357 GCAATTTTTTGAATATTCCATGCTCGGCAAATCGCATCATTTGACCTAAATAGTTTGTNATTTTG
193 GCAATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
34422 CAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTTG-CCTC
258 CAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT-
* * * * *
34486 TGTATGAACTGT-CGAACTTGTCAAACTTTTACGAGTTATATTT-TAACTTCGGTTCCTTATAGT
322 TGGACGAACT-TCCGAACTTGTCAAACTTTTACGAGTTAT-TTTATAACTTCGGATCCCTAAAGT
**
34549 ATTCAACAAGATCCATTCCTTATAGCAA-----T-----TT---T-C-CGAG---T---ATCATT
385 ATTCAACAAGATCCATT-CTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATT
*
34593 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGAG
449 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG
** * * ** * * * * *
34658 AGAATTGCATCACTCTTGGTTAATGGACGAAC-TCCTGAACTTGTCAAACTTTGAAGAGATCTTT
514 AGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTATTT
** * * * * * **
34722 TATAACTGAACTTCCTTAAAGTATTCAAGACGACCCATTCCTTT-GAGCATTTTTCTGAACATTC
578 TATAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATT-TTTTAGAGCAAATTTCTGAACATTC
*
34786 CATG
642 CATC
* * *
34790 CTCAGGAAATTGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTGGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * * * * *
34855 TTAAAAACTTATATGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAAGTTTCGAACGTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* * * *
34920 AACTTTTATGACTTCTTTTATAACTTCCG-TTCCTTAAAGTATTCAAGGCGATCCAGTCCTTCGA
131 AACTTTTACGAGTTCTTTTATAACTT-CGATTCCCTAAAGTATTCAA--CGATCCATTCCTTCGA
* * * * * * * *
34984 GCAGTTTTGCAAACATTCCTTGCTCAAG-AAATCACATCATTTGGTCTAAATAGATTGTCA-TTT
193 GCAATTTTTCGAATATTCCATGCTC-GGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * *
35047 GTTAAACAGGTTTTGGTCGTTGAATTTAAATCTTATTTACGTGACAATTGTTTCTC-CTTTTGTT
257 G-CAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTTGTT
* * *
35111 CTTGGACGAACTTCCGAAGC-TGTCAAACTTTTACTG-GTTCTTTTATAACTTTGGATCCTTAAA
320 CTTGGACGAACTTCCGAA-CTTGTCAAACTTTTAC-GAGTTATTTTATAACTTCGGATCCCTAAA
* * * * * * *
35174 GTATTGAAGACGATCTATTTTTTCGTGCAATTTTCTAAACATTCCATGCTCGAGAAATCGCATCA
383 GTATTCAACAAGATCCA-TTCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCA
* * * * * * * * * * *
35239 TTTGATGTAAATAATTTGCCGTTTAGCAAACAGGTTTTTGCCTTTAAATTAAAAACTTA-TTACG
447 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACG
* *
35303 TGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACGTTCGAACTTCTCAAACTTTTACGAGTTATT
512 TGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATT
* * * * *
35368 TTTTAACTTCAATTCCCTAAAGTATTCAACAAGATCCATTTTCTAGAGC-AATTTTTCGAACATT
577 TTATAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCT-GAACATT
35432 CCATC
641 CCATC
* * * *
35437 CTTGGGAAATTGCATCATTTGATCTAAATAGATTGTCATTTTGTAAACAAGTTCTGGTCTTTGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * *
35502 TGAAAAAGTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACTTTC-AAGCTTGTC
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAA-CTTGTC
* * *
35566 AAACTTTTACTAGTTCTTTTATAACTTCTGA-TCCTTAAAGTATTCAAGACTATCCATTCCTTCG
130 AAACTTTTACGAGTTCTTTTATAACTTC-GATTCCCTAAAGTATTC-A-ACGATCCATTCCTTCG
* * * *
35630 AGCAA-TTTTCTAAATATTCCATGCTCGGCAAATCGCATCATTTGGCCTAAATGGTTTGTCATTC
192 AGCAATTTTTC-GAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
** * * *
35694 TAAAAAAAAATTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TC
256 TGCAAACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTC
* * * * *
35758 TCTGTACAAACTTTCTAACTTGTCAAACTTTTACGAGTTATTTTTTAACTTC-GATTCCCTAAAG
321 T-TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGA-TCCCTAAAG
* * * *
35822 TGTTCAACAAGATCCATTCGTTAGAGCAATTTTCTGAACATTCCGTGCTTGAGAAATCGCATCAT
384 TATTCAACAAGATCCATTC-TTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCAT
* * * *
35887 TTGGTTTAAATATTTTGTCATTTTGTAAACAAGTTTTAGTCTTTGAATT-AAAACTTATTTACGA
448 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGT
** * * * * * * *
35951 GAGAATTGCATCACTCTTGGTTCATGGACGAAC-TCCTGAACTTGTCAAACTTTTAGGAGATCTT
513 GAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTATT
* * * * * * * *
36015 TTATAACTTAACTTCCTTAAAGTATTCAAGACGACCCATTCCTTT-GAG-TATTTTCTGAACATT
577 TTATAACTTCAGTTCCCTAAAGTATTCAAGAAGATCCATT-TTTTAGAGCAAATTTCTGAACATT
*
36078 CCATG
641 CCATC
*** * * * *
36083 CTCAAAAAATTGCATCATTCGGTCTAAAGAGTTTGTCATTTCGTAAACAAGTTTTGGTCTTGGAA
1 CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
* * * * * *
36148 TAAAAAACTTATTTGCGTGAGAATTGTTTCTCTCTTTCTTCTTGGATGAACTTTCAAACGTGTCA
66 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * * *
36213 AACTTTTACGACTTATTTTATAACTTCCATTCCTTAAAGTATTGAAGGCGATCCAGTCCTTCGAG
131 AACTTTTACGAGTTCTTTTATAACTTCGATTCCCTAAAGTATTCAA--CGATCCATTCCTTCGAG
* * * * * * * * *
36278 CAGTTTTCCAAACATTCCTTGCTCAAG-AAATCACAGCATTTGGTCTAAATAGATTGTCATTTAT
194 CAATTTTTCGAATATTCCATGCTC-GGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT-T
* *
36342 -TAAACAGGTTTTGGTCGTTGAATTAAAA
257 GCAAACAAGTTTTGGTCGTTGAATTAAAA
Statistics
Matches: 6122, Mismatches: 1011, Indels: 407
0.81 0.13 0.05
Matches are distributed among these distances:
625 1 0.00
626 149 0.02
627 355 0.06
628 12 0.00
629 1 0.00
631 1 0.00
632 130 0.02
633 245 0.04
634 13 0.00
636 8 0.00
637 296 0.05
638 1140 0.19
639 456 0.07
640 28 0.00
641 3 0.00
642 152 0.02
643 4 0.00
644 4 0.00
645 232 0.04
646 849 0.14
647 1565 0.26
648 474 0.08
649 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (645 bp):
CTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAA
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCA
AACTTTTACGAGTTCTTTTATAACTTCGATTCCCTAAAGTATTCAACGATCCATTCCTTCGAGCA
ATTTTTCGAATATTCCATGCTCGGCAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAA
ACAAGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
CGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTTCGGATCCCTAAAGTATTCAA
CAAGATCCATTCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTA
AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG
TTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTATTTTATAACTT
CAGTTCCCTAAAGTATTCAAGAAGATCCATTTTTTAGAGCAAATTTCTGAACATTCCATC
Found at i:34739 original size:195 final size:195
Alignment explanation
Indices: 34392--34764 Score: 455
Period size: 195 Copynumber: 1.9 Consensus size: 195
34382 GGCAAATCGC
*
34392 ATCATTTGACCTAAATAGTTTGTNATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
1 ATCATTTGACCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
* ** * * * * * * * *
34457 TACGTGAGAATTGTTTCTCCCTTTGCCTCTGTATGAACTGTCGAACTTGTCAAACTTTTACGAGT
66 TACGAGAGAATTGCATCACCCTTTGCCTATGGACGAACTCTCGAACTTGTCAAACTTTGAAGAGA
**** * *
34522 TATATTTTAACTTCGGTTCCTTATAGTATTCAACAAGATCCATTCCTTATAGCAATTTTCCGAGT
131 TATATTTTAACTGAACTTCCTTAAAGTATTCAACAAGACCCATTCCTTATAGCAATTTTCCGAGT
** *
34587 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
1 ATCATTTGACCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
* **
34652 TACGAGAGAATTGCATCACTC-TTGGTTAATGGACGAACTC-CTGAACTTGTCAAACTTTGAAGA
66 TACGAGAGAATTGCATCACCCTTTGCCT-ATGGACGAACTCTC-GAACTTGTCAAACTTTGAAGA
* * *
34715 GATCT-TTTATAACTGAACTTCCTTAAAGTATTCAAGACGACCCATTCCTT
129 GATATATTT-TAACTGAACTTCCTTAAAGTATTCAACAAGACCCATTCCTT
34765 TGAGCATTTT
Statistics
Matches: 148, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
194 8 0.05
195 140 0.95
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (195 bp):
ATCATTTGACCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAAAACTTATT
TACGAGAGAATTGCATCACCCTTTGCCTATGGACGAACTCTCGAACTTGTCAAACTTTGAAGAGA
TATATTTTAACTGAACTTCCTTAAAGTATTCAACAAGACCCATTCCTTATAGCAATTTTCCGAGT
Done.