genome.fa.s12851.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012851.1 Kokia drynarioides strain JFW-HI SEQ_127865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213010

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3086--3234	30	5.0	30	79	3	131	41	5	18	34	1.74
4540--4566	14	1.9	14	100	0	54	70	0	0	29	0.88
5361--5414	18	2.8	19	80	8	65	18	0	20	61	1.35
13257--13354	32	3.2	32	77	18	100	22	15	11	51	1.75
13309--13375	32	2.1	32	83	5	82	26	14	10	47	1.77
13250--13428	93	1.9	92	80	9	204	24	15	12	48	1.79
15023--15153	59	2.2	59	84	0	163	57	7	9	25	1.56
17742--17776	18	1.9	18	100	0	70	40	5	14	40	1.69
18217--18247	6	5.2	6	100	0	62	16	0	67	16	1.23
19958--20025	34	2.0	34	94	0	118	42	16	16	25	1.87
19964--20035	34	2.1	34	92	0	117	40	15	18	26	1.90
27207--27251	14	2.9	16	80	16	58	53	0	0	46	1.00
28422--28465	22	2.0	22	86	8	63	70	0	0	29	0.88
28862--28984	65	1.9	65	89	0	192	34	8	10	46	1.68
29785--29813	2	14.5	2	100	0	58	48	0	0	51	1.00
30411--30597	96	1.9	96	86	4	261	39	13	16	29	1.88
30958--31273	30	10.8	29	79	11	299	31	4	28	35	1.78
30921--31267	59	5.9	58	82	7	364	31	4	29	34	1.77
30958--31267	119	2.6	118	86	7	416	31	4	28	35	1.77
33141--33222	6	14.3	6	69	19	50	53	1	1	43	1.16
33144--33222	17	4.6	17	80	4	97	54	1	1	43	1.16
33144--33221	33	2.3	34	84	4	95	55	1	1	42	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44564--44629	29	2.3	28	84	10	80	60	3	1	34	1.21
52545--52590	3	15.3	3	95	0	83	65	0	34	0	0.93
71584--71627	22	2.0	22	82	8	54	40	2	22	34	1.67
74543--74601	21	2.8	22	84	5	77	32	13	22	32	1.92
76269--76344	26	2.9	26	96	0	134	35	23	9	31	1.86
85131--85176	15	3.1	15	70	17	51	23	8	13	54	1.66
86611--86645	2	17.5	2	100	0	70	48	0	0	51	1.00
87577--87620	22	2.1	21	88	12	65	29	2	0	68	1.02
88914--89034	10	12.6	10	70	8	83	27	4	0	68	1.07
88866--89009	56	2.5	56	83	6	164	27	5	1	65	1.23
88912--89035	28	4.4	26	75	15	104	28	4	0	67	1.08
88844--89030	58	3.3	57	80	10	188	28	5	1	64	1.25
88941--89033	19	4.8	20	77	7	93	26	4	0	68	1.08
88931--89033	39	2.6	40	78	6	111	27	4	0	67	1.10
92265--92558	145	2.0	145	89	2	448	34	15	11	38	1.84
94311--94343	16	2.1	16	100	0	66	57	18	0	24	1.40
97430--97467	3	12.7	3	94	0	67	2	34	0	63	1.09
97279--97584	166	1.8	165	92	0	513	32	22	8	36	1.84
102101--102174	26	2.8	27	81	4	96	21	16	25	36	1.94
102162--102236	27	2.8	27	100	0	150	28	16	22	33	1.95
106808--106847	20	1.9	20	85	10	53	35	15	15	35	1.88
115990--116043	28	1.9	28	92	0	90	37	22	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116573--116610	19	2.0	19	89	0	58	2	10	7	78	1.04
117370--117464	50	1.9	50	80	4	111	31	15	14	37	1.88
117461--117780	101	3.2	100	78	8	339	27	17	16	38	1.91
121693--121847	79	2.0	80	90	1	249	23	27	9	39	1.86
130219--130293	22	3.0	27	73	18	88	26	32	18	22	1.97
130293--130336	21	2.1	21	86	0	61	20	29	13	36	1.91
130344--130396	25	2.1	26	89	3	81	15	16	18	49	1.80
149625--149662	15	2.6	15	83	4	51	18	10	5	65	1.41
158433--158570	70	2.0	70	82	5	172	35	21	1	42	1.62
161435--161900	233	2.0	233	99	0	914	37	17	17	27	1.92
163185--163551	101	3.7	102	76	10	357	37	18	17	26	1.92
168018--168076	29	2.0	28	81	12	66	32	22	0	45	1.52
182371--182591	28	8.2	28	73	10	156	24	9	24	40	1.86
182468--182565	24	3.9	24	73	10	88	22	15	25	36	1.93
182471--182595	52	2.4	52	87	0	178	23	13	24	39	1.90
190141--190166	13	2.0	13	100	0	52	38	0	0	61	0.96
190206--190271	30	2.2	29	78	13	71	50	1	0	48	1.10
192954--192992	18	2.3	17	86	8	53	28	0	2	69	1.02
196023--196138	34	3.4	34	84	7	155	17	12	33	36	1.88
196041--196173	68	2.0	68	83	3	169	19	14	31	34	1.92
197536--197602	36	1.9	36	84	6	93	55	13	4	26	1.57
206782--206824	18	2.4	18	88	7	61	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211928--211998	4	17.8	4	81	11	74	67	0	32	0	0.91
211929--211997	36	1.9	35	88	2	102	66	0	33	0	0.92

Tables:   1

The End!