genome.fa.s12855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012855.1 Kokia drynarioides strain JFW-HI SEQ_127869, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  238010

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8237--8286	20	2.3	20	83	10	55	58	10	4	28	1.49
9577--9605	3	9.7	3	100	0	58	34	0	31	34	1.58
10327--10537	51	4.2	50	67	19	125	44	8	3	43	1.51
12497--12760	69	3.8	69	82	2	316	34	23	21	20	1.96
12500--12760	138	1.9	138	85	1	362	34	23	21	20	1.97
12788--12923	57	2.4	56	81	7	157	36	16	9	38	1.81
15601--15657	29	2.0	28	83	13	71	47	0	38	14	1.44
21622--21664	19	2.5	16	76	20	50	25	18	37	18	1.94
21630--21673	19	2.3	19	96	0	79	27	20	36	15	1.93
28310--28367	17	3.4	17	75	0	53	48	13	17	20	1.81
28310--28375	34	1.9	34	82	11	82	46	13	18	21	1.83
31031--31168	69	2.0	69	97	0	258	35	19	16	28	1.94
54292--54466	89	2.0	90	88	3	264	37	18	14	29	1.90
55087--55148	18	3.2	19	84	11	65	40	1	6	51	1.37
58427--58469	21	2.0	21	100	0	86	34	23	0	41	1.55
62776--62822	24	2.0	24	86	0	67	6	6	29	57	1.49
66544--66606	29	2.2	29	91	0	99	14	19	20	46	1.84
70722--70781	22	2.8	22	80	7	61	61	18	3	16	1.47
71159--71193	3	11.7	3	93	0	61	65	0	2	31	1.07
71730--71801	12	6.1	11	73	20	65	22	1	1	75	0.96
71727--71798	19	3.9	19	71	12	60	23	1	1	73	0.99
71752--71830	14	5.8	14	68	21	51	26	2	2	68	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71728--71796	25	2.9	24	85	10	88	23	1	1	73	0.99
71729--71798	37	1.9	35	83	16	90	22	1	1	74	0.98
72087--72127	17	2.4	17	87	0	55	19	2	0	78	0.87
95129--95332	79	2.6	80	81	5	229	32	26	19	21	1.97
98058--98146	17	5.1	18	83	6	112	39	0	2	58	1.11
98051--98117	23	2.9	22	78	8	71	38	0	1	59	1.06
98059--98155	35	2.8	35	85	3	124	40	0	2	57	1.10
98054--98155	6	17.2	6	76	9	84	40	0	1	57	1.10
98774--98815	13	3.2	13	80	6	50	64	0	0	35	0.94
99401--99442	5	8.4	5	83	0	57	19	57	16	7	1.62
99393--99434	20	2.1	20	100	0	84	21	52	16	9	1.72
99401--99442	15	2.8	15	88	0	66	19	57	16	7	1.62
99821--100019	29	6.9	29	74	12	133	36	26	1	36	1.66
99817--100032	87	2.5	87	80	9	226	35	28	1	34	1.66
99818--100018	58	3.5	58	81	13	177	35	27	1	35	1.66
101107--101144	16	2.4	16	86	4	51	0	15	0	84	0.63
101100--101141	13	3.4	12	81	15	50	0	21	0	78	0.75
101107--101144	20	1.9	19	89	5	58	0	15	0	84	0.63
110181--110237	11	5.3	11	87	10	82	0	15	0	84	0.63
110182--110240	19	3.0	19	87	5	82	0	13	0	86	0.57
110185--110240	21	2.6	21	88	8	78	0	12	0	87	0.54
111147--111175	8	3.6	8	100	0	58	24	10	27	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112905--112991	45	1.9	45	85	0	120	48	2	19	29	1.61
112982--113094	55	2.0	56	89	1	174	27	7	13	51	1.68
116434--116527	21	4.5	22	75	11	92	51	20	0	28	1.48
116641--116700	31	1.9	31	82	0	75	31	18	20	30	1.96
116664--116799	72	1.9	73	83	4	177	30	19	22	27	1.98
119801--119899	49	2.0	50	84	9	132	31	18	18	32	1.95
120837--120926	40	2.2	40	100	0	180	33	17	18	30	1.95
120990--121069	38	2.1	39	92	2	135	45	0	3	51	1.19
123990--124032	23	1.9	22	85	4	59	34	51	2	11	1.51
131378--131434	29	2.0	29	92	0	96	54	8	10	26	1.63
135004--135059	17	3.2	17	80	5	67	51	14	5	28	1.64
135765--135831	32	2.1	32	86	2	91	37	7	10	44	1.67
139103--139174	31	2.4	29	81	9	92	51	9	15	23	1.73
151863--151897	16	2.1	18	89	10	56	62	5	20	11	1.48
152072--152130	24	2.5	24	88	0	91	49	8	13	28	1.71
154036--154098	24	2.6	24	84	0	81	50	9	12	26	1.71
162916--162965	22	2.3	22	100	0	100	42	0	12	46	1.41
172788--172824	19	2.1	17	90	10	56	83	0	5	10	0.79
184401--184478	31	2.6	30	84	8	95	37	3	6	52	1.45
184419--184489	31	2.3	31	80	4	81	39	4	4	52	1.41
194858--194887	15	2.0	15	100	0	60	40	6	26	26	1.81
197853--197885	11	2.8	12	86	4	50	33	3	12	51	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200273--200335	13	4.6	14	75	11	60	34	7	3	53	1.46
200273--200348	13	5.7	13	73	13	57	35	9	3	51	1.53
213545--213662	41	2.9	41	88	5	184	28	25	19	26	1.99
220192--220312	41	2.9	39	80	4	134	28	23	17	29	1.97
222484--222670	101	1.8	103	93	2	324	31	14	26	27	1.95
222484--222691	101	2.0	102	88	7	307	34	14	24	27	1.94
223259--223283	13	1.9	13	100	0	50	28	0	16	56	1.41
224300--224329	13	2.2	14	94	5	53	50	0	16	33	1.46
229727--229774	25	1.9	25	87	8	71	54	12	14	18	1.71

Tables:   1

The End!