genome.fa.s12859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012859.1 Kokia drynarioides strain JFW-HI SEQ_127873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  286603

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595--630	2	18.0	2	100	0	72	50	0	50	0	1.00
23666--23728	28	2.2	28	85	0	90	23	7	30	38	1.84
23828--23960	58	2.3	60	84	5	173	33	3	28	35	1.73
23828--23967	30	4.7	29	78	6	131	32	2	28	35	1.72
25030--25070	3	13.3	3	94	5	73	34	0	0	65	0.93
25767--25861	6	16.7	6	69	14	67	51	3	1	44	1.24
25767--25861	17	5.6	17	79	0	109	51	3	1	44	1.24
26045--26690	323	2.0	323	97	0	1211	24	21	17	36	1.95
26596--26868	120	2.3	119	84	6	345	21	21	20	35	1.96
26716--27288	204	2.8	204	86	1	770	21	20	20	36	1.95
29137--29409	120	2.3	119	84	6	345	21	21	20	35	1.96
29257--29829	204	2.8	204	86	1	770	21	20	20	36	1.95
41008--41188	96	1.9	96	84	6	242	37	15	17	29	1.90
41573--41771	59	3.4	57	84	4	222	32	4	29	34	1.76
41556--41781	29	7.8	30	77	10	218	31	4	28	34	1.77
41619--41781	56	2.8	57	88	4	240	31	3	30	34	1.75
43535--43611	6	13.5	6	72	15	65	50	2	1	45	1.23
43535--43611	17	4.5	17	80	9	86	50	2	1	45	1.23
43535--43611	34	2.3	34	86	0	100	50	2	1	45	1.23
44132--44158	14	1.9	14	100	0	54	29	0	18	51	1.46
48097--48130	11	2.8	13	82	17	54	70	14	5	8	1.31
51911--51947	17	2.2	17	95	0	65	32	37	10	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69005--69061	29	1.9	30	85	3	80	50	8	5	35	1.56
69549--69600	20	2.5	22	77	22	60	51	0	1	46	1.12
70956--71057	51	2.0	51	94	0	177	24	11	20	43	1.85
82468--82574	35	3.1	34	68	11	85	24	11	9	55	1.64
85302--85336	16	2.1	16	89	5	52	48	0	0	51	1.00
92625--92696	38	1.9	38	82	2	92	31	27	18	22	1.97
96909--96938	15	1.9	16	93	6	53	66	0	13	20	1.24
96881--96943	22	2.8	22	80	7	65	73	1	9	15	1.17
100965--100997	14	2.4	14	90	10	50	42	0	3	54	1.15
109920--110187	134	2.0	134	99	0	527	21	18	16	42	1.89
111128--111152	2	12.5	2	100	0	50	52	0	0	48	1.00
133185--133218	6	5.7	6	85	0	50	32	5	17	44	1.73
141240--141366	63	2.0	62	90	1	200	51	0	2	45	1.19
142381--142410	8	3.8	8	100	0	60	33	0	0	66	0.92
142874--142903	12	2.4	12	94	5	51	80	0	6	13	0.91
145644--145926	106	2.7	106	80	2	316	38	21	10	30	1.87
146880--146913	16	2.1	16	88	5	50	26	2	11	58	1.47
146925--146970	21	2.1	23	88	8	69	15	4	0	80	0.86
146929--146965	16	2.4	15	86	8	56	16	2	0	81	0.81
150143--150196	28	1.9	28	84	0	72	27	20	9	42	1.82
150925--150963	2	19.5	2	100	0	78	51	0	48	0	1.00
151403--151498	31	3.1	31	86	1	131	44	12	12	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154287--154379	29	3.3	27	75	14	80	31	31	4	33	1.77
161422--161487	30	2.2	30	78	10	73	56	16	3	24	1.55
164875--164921	17	2.6	19	86	10	71	38	4	2	55	1.31
164913--164965	17	3.1	17	80	2	61	49	3	5	41	1.44
166777--167152	29	12.8	29	73	11	214	34	23	5	36	1.77
166797--167154	59	6.1	59	81	3	331	33	23	5	36	1.78
166846--167240	58	6.8	57	78	8	302	34	23	4	37	1.76
167361--167390	7	4.3	7	95	0	51	13	0	10	76	1.01
178781--178818	18	2.0	20	85	15	53	26	7	13	52	1.67
182769--182929	80	2.0	80	90	0	250	16	23	24	36	1.94
189959--190005	18	2.6	19	76	10	53	38	2	6	53	1.39
201302--201355	16	3.4	16	78	0	63	51	1	12	33	1.51
201531--201680	56	2.6	56	79	11	171	52	3	2	42	1.29
221406--221460	25	2.2	25	81	9	69	60	5	1	32	1.30
221460--221512	27	1.9	27	92	3	88	54	0	0	45	0.99
225676--225700	12	2.1	12	100	0	50	16	40	16	28	1.89
227079--227130	26	1.9	28	84	7	72	38	3	0	57	1.17
229432--229456	11	2.3	11	100	0	50	36	0	0	64	0.94
229728--230083	30	12.1	30	76	12	253	36	23	2	37	1.69
229728--229972	89	2.7	87	83	8	296	36	23	2	37	1.67
229758--230008	59	4.2	61	75	14	136	36	22	2	38	1.67
229963--230045	29	2.9	28	78	7	87	37	21	4	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235559--235583	2	12.5	2	100	0	50	48	0	0	52	1.00
235583--235628	2	23.0	2	90	0	74	4	0	45	50	1.21
235581--235632	18	2.9	18	88	0	68	9	0	42	48	1.36
241351--241397	15	3.0	16	77	22	55	63	0	2	34	1.06
241351--241387	19	1.9	19	88	0	56	62	0	2	35	1.10
241410--241437	2	14.0	2	100	0	56	50	0	0	50	1.00
243796--244218	211	2.0	211	94	0	747	39	9	13	37	1.77
247992--248041	23	2.2	22	82	10	57	50	4	2	44	1.32
248025--248068	18	2.4	18	76	0	52	56	4	4	34	1.40
263237--263286	25	2.0	25	81	14	59	36	8	6	50	1.57
265647--265911	90	2.9	91	85	1	327	20	21	15	42	1.89
267865--267908	18	2.5	17	82	17	54	52	9	2	36	1.46
268210--268379	85	2.0	85	98	0	331	37	9	12	41	1.75
271255--271308	27	2.0	28	88	3	83	55	3	5	35	1.41
276889--276949	23	2.7	23	84	5	70	39	18	9	32	1.83
277501--277534	14	2.4	14	90	5	50	52	0	2	44	1.16
277538--277567	16	1.9	16	93	6	53	40	0	0	60	0.97
278205--278272	9	8.1	9	72	26	60	50	0	0	50	1.00
278229--278258	15	1.9	16	93	6	53	60	0	0	40	0.97
281285--281359	21	3.6	21	73	10	64	28	13	26	32	1.94
281732--281805	28	2.6	29	81	18	93	48	0	0	51	1.00
286204--286238	18	1.9	18	88	0	52	25	25	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286536--286571	18	2.1	18	89	5	56	33	25	0	41	1.55

Tables:   1

The End!