Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012865.1 Kokia drynarioides strain JFW-HI SEQ_127879, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1558
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:999 original size:22 final size:22

Alignment explanation


    Indices: 971--1015  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        961 CCAACCACAT

                                  
        971 AATGCAATTTAAAATTAATTAA
          1 AATGCAATTTAAAATTAATTAA

                                  
        993 AATGCAATTTAAAATTAATTAA
          1 AATGCAATTTAAAATTAATTAA

             
       1015 A
          1 A

       1016 CACTAGGTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36


Consensus pattern (22 bp):   
AATGCAATTTAAAATTAATTAA

Found at i:1006 original size:12 final size:12

Alignment explanation


    Indices: 971--1007  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        961 CCAACCACAT

                        
        971 AATGCAATTTAA
          1 AATGCAATTTAA

                *       
        983 AAT-TAA-TTAA
          1 AATGCAATTTAA

                        
        993 AATGCAATTTAA
          1 AATGCAATTTAA

               
       1005 AAT
          1 AAT

       1008 TAATTAAACA


Statistics
Matches: 21,  Mismatches: 2, Indels: 4
        0.78            0.07        0.15

Matches are distributed among these distances:
  10    7  0.33
  11    4  0.19
  12   10  0.48

ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35


Consensus pattern (12 bp):   
AATGCAATTTAA

Found at i:1300 original size:22 final size:22

Alignment explanation


    Indices: 1272--1316  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1262 CCAACCACAT

                                  
       1272 AATGCAATTTAAAATTAATTAA
          1 AATGCAATTTAAAATTAATTAA

                                  
       1294 AATGCAATTTAAAATTAATTAA
          1 AATGCAATTTAAAATTAATTAA

             
       1316 A
          1 A

       1317 CACTAGGTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36


Consensus pattern (22 bp):   
AATGCAATTTAAAATTAATTAA

Found at i:1307 original size:12 final size:12

Alignment explanation


    Indices: 1272--1308  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

       1262 CCAACCACAT

                        
       1272 AATGCAATTTAA
          1 AATGCAATTTAA

                *       
       1284 AAT-TAA-TTAA
          1 AATGCAATTTAA

                        
       1294 AATGCAATTTAA
          1 AATGCAATTTAA

               
       1306 AAT
          1 AAT

       1309 TAATTAAACA


Statistics
Matches: 21,  Mismatches: 2, Indels: 4
        0.78            0.07        0.15

Matches are distributed among these distances:
  10    7  0.33
  11    4  0.19
  12   10  0.48

ACGTcount: A:0.54, C:0.05, G:0.05, T:0.35


Consensus pattern (12 bp):   
AATGCAATTTAA
Done.