genome.fa.s12867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012867.1 Kokia drynarioides strain JFW-HI SEQ_127881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163096

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595--678	17	4.8	17	80	9	71	47	1	2	48	1.22
606--678	17	4.1	17	81	10	83	49	1	2	46	1.24
620--670	6	8.3	6	75	12	50	52	0	1	45	1.12
3774--3964	98	1.9	97	84	4	249	29	27	12	30	1.93
4714--4760	16	3.0	15	82	11	67	80	0	4	14	0.85
21397--21435	19	2.0	19	85	5	51	17	12	7	61	1.54
31631--31667	9	4.3	9	80	13	51	64	0	2	32	1.07
31632--31672	16	2.6	16	88	7	57	63	0	2	34	1.08
33221--33352	66	2.0	66	95	0	237	25	16	13	44	1.84
59912--59972	27	2.3	27	97	0	113	57	6	8	27	1.53
61128--61171	23	2.0	22	90	4	70	18	0	34	47	1.49
63288--63370	42	2.0	42	100	0	166	55	15	14	14	1.70
63727--63767	15	2.8	16	82	14	52	0	29	0	70	0.87
76993--77315	68	4.8	68	79	9	342	38	19	4	37	1.73
77117--77220	10	9.4	10	72	16	64	40	20	2	36	1.67
77133--77282	59	2.6	58	85	2	192	38	19	4	38	1.70
77060--77309	128	2.0	126	87	1	365	37	19	4	38	1.73
77255--77295	20	2.0	20	85	0	55	43	19	4	31	1.72
77314--77357	23	1.9	23	95	0	79	47	11	4	36	1.60
78345--78412	3	22.3	3	78	3	64	58	4	5	30	1.41
78551--78611	5	12.0	5	77	16	63	75	1	1	21	0.98
78531--78595	27	2.4	27	80	12	71	72	4	3	20	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78551--78603	13	3.9	13	82	7	70	75	1	1	20	0.99
78549--78608	18	3.4	18	84	8	79	76	1	1	20	0.96
78551--78611	28	2.2	28	82	11	72	75	1	1	21	0.98
78551--78611	23	2.6	24	85	10	83	75	1	1	21	0.98
80118--80381	36	7.3	36	88	0	377	35	22	10	31	1.88
95782--95838	28	2.0	28	100	0	114	38	0	17	43	1.49
97634--97663	15	2.0	15	93	0	51	30	0	0	70	0.88
97754--97789	16	2.1	16	90	10	54	72	0	0	27	0.85
100148--100206	31	1.9	31	83	13	77	42	5	5	47	1.47
100890--100942	20	2.7	20	88	2	72	35	0	11	52	1.37
106788--106838	15	3.3	16	78	13	54	0	19	3	76	0.94
107396--107438	17	2.5	17	88	0	59	58	11	13	16	1.64
116236--116372	43	3.2	43	84	5	170	36	8	26	28	1.86
116267--116470	42	5.0	41	86	4	182	36	8	25	29	1.85
116309--116451	39	3.6	41	91	2	186	37	6	23	32	1.80
122586--122614	15	1.9	15	100	0	58	34	31	6	27	1.83
138969--138994	12	2.2	12	100	0	52	34	7	15	42	1.75
140331--141038	270	2.6	269	82	4	820	31	14	18	34	1.92
141575--141640	17	3.9	17	73	0	51	48	12	18	21	1.80
149080--149147	24	2.8	24	82	8	66	35	20	17	26	1.95
149108--149154	24	2.0	24	86	0	67	29	17	21	31	1.96
151145--151230	31	2.8	31	80	3	95	33	5	12	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152943--152986	11	3.9	11	82	5	52	34	0	6	59	1.24
152927--152962	17	2.2	17	90	5	56	33	0	2	63	1.08
152937--152992	6	9.7	6	73	7	53	37	0	5	57	1.22
152941--152992	11	4.5	11	80	7	50	38	0	5	55	1.24
152998--153044	14	3.5	13	82	11	51	42	23	8	25	1.82
153650--153742	3	31.0	3	79	4	89	58	4	3	34	1.34
154757--155125	29	13.0	28	78	12	328	36	26	2	34	1.69
154769--155133	59	6.4	59	80	11	388	36	27	2	33	1.69
154855--154899	21	2.3	19	92	7	72	37	26	2	33	1.69
154799--155144	89	4.2	80	77	16	292	36	26	2	34	1.68
155079--155173	49	1.9	50	86	2	138	34	28	1	35	1.65
155130--155262	58	2.3	58	77	10	130	31	29	6	32	1.83
156848--156890	22	2.0	21	82	13	52	44	11	30	13	1.80

Tables:   1

The End!