genome.fa.s12868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012868.1 Kokia drynarioides strain JFW-HI SEQ_127882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161180

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352--391	17	2.4	17	95	0	71	45	7	22	25	1.78
704--1049	132	2.6	131	82	3	437	20	24	25	29	1.99
8880--9056	88	2.0	88	100	0	354	27	12	27	32	1.92
11800--11848	25	2.0	24	84	8	62	59	10	2	28	1.41
11894--11958	30	2.2	30	91	5	105	56	13	4	24	1.56
13523--13563	20	2.0	20	86	9	57	26	9	9	53	1.65
15124--15212	17	5.0	17	72	12	63	31	1	3	64	1.17
15088--15200	10	11.7	10	66	17	51	35	0	2	61	1.16
15137--15208	29	2.6	27	81	14	78	33	1	2	62	1.18
15071--15316	9	26.8	9	65	18	80	32	2	2	61	1.23
15734--15760	3	9.0	3	100	0	54	66	0	0	33	0.92
15759--15786	3	9.3	3	100	0	56	32	0	0	67	0.91
16202--16256	25	2.2	25	87	3	76	69	5	1	23	1.19
18858--18968	41	2.7	42	94	1	188	36	18	18	26	1.95
21819--21849	4	7.8	4	92	0	53	22	0	77	0	0.77
24412--24483	36	1.9	39	83	8	96	43	4	1	51	1.29
24478--24593	61	1.9	59	84	3	151	44	0	4	50	1.27
24537--24598	12	5.1	12	69	30	51	50	0	1	48	1.10
24541--24603	32	2.0	32	84	6	83	49	0	4	46	1.23
25653--25688	18	1.9	19	88	5	56	66	0	2	30	1.06
28660--28742	42	2.0	41	83	6	105	49	20	0	30	1.49
41075--41122	12	4.0	12	78	5	53	0	25	4	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43044--43076	14	2.4	14	90	5	50	72	3	15	9	1.21
47372--47425	18	3.0	18	83	0	63	20	14	27	37	1.92
54483--54549	20	3.3	20	78	0	71	34	16	32	16	1.91
58074--58109	11	3.0	13	80	19	51	47	13	8	30	1.73
77120--77251	62	2.1	62	94	0	228	25	25	16	33	1.96
78511--78550	18	2.3	18	86	4	55	17	15	12	55	1.70
79533--79592	30	2.0	30	96	0	111	20	13	8	58	1.60
93962--94003	21	2.0	21	100	0	84	28	0	0	71	0.86
96782--96851	21	3.4	20	82	7	70	18	4	37	40	1.71
96795--96856	21	3.0	21	86	4	83	20	4	35	38	1.74
97405--97443	21	1.9	21	89	5	62	46	30	2	20	1.64
103869--103926	21	2.8	20	84	7	71	24	3	36	36	1.72
104827--104870	22	2.0	22	81	4	52	27	11	18	43	1.84
106638--106687	12	4.1	12	72	23	50	48	2	0	50	1.12
110241--110294	17	3.1	17	81	5	63	53	11	11	24	1.68
110241--110294	18	3.1	18	83	2	65	53	11	11	24	1.68
125886--125915	11	2.7	11	94	0	51	20	33	0	46	1.51
126080--126154	9	8.3	9	69	19	50	30	0	0	69	0.89
126101--126145	21	2.3	20	82	17	60	33	0	0	66	0.92
128999--129053	23	2.4	23	80	20	62	67	0	1	30	1.01
129005--129052	23	2.3	22	86	13	66	64	0	2	33	1.05
129485--129534	19	2.6	19	90	3	73	38	2	6	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132152--132242	27	3.3	26	69	21	69	51	12	13	23	1.73
132128--132259	59	2.3	56	84	3	165	50	13	12	24	1.76
132652--132690	19	2.1	19	85	9	53	28	5	5	61	1.39
134119--134161	13	3.3	13	86	0	59	23	2	11	62	1.40
135265--135343	30	2.7	29	75	13	72	36	3	16	43	1.66
135325--135419	50	1.9	50	82	8	122	33	6	23	36	1.80
141746--141820	30	2.5	30	74	10	73	42	1	13	42	1.52
144368--144504	36	3.9	36	77	9	156	32	8	23	35	1.85
144759--145118	120	3.0	120	85	2	472	28	23	15	31	1.96
154214--154272	18	3.2	18	75	20	52	33	0	6	59	1.24
154223--154272	19	2.6	20	81	15	61	34	0	6	60	1.21
158171--158195	2	12.5	2	100	0	50	52	0	48	0	1.00

Tables:   1

The End!