Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012877.1 Kokia drynarioides strain JFW-HI SEQ_127891, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4923
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33


Found at i:128 original size:18 final size:17

Alignment explanation


    Indices: 84--129  Score: 83
    Period size: 17  Copynumber: 2.7  Consensus size: 17

         74 TAATAATAAA

                *            
         84 ATAATTAAAAATTATTC
          1 ATAACTAAAAATTATTC

                             
        101 ATAACTAAAAATTATTC
          1 ATAACTAAAAATTATTC

                        
        118 ATAACTAAAAAT
          1 ATAACTAAAAAT

        130 AAACAAATGT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  17   28  1.00

ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35


Consensus pattern (17 bp):   
ATAACTAAAAATTATTC
Done.