Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001288.1 Kokia drynarioides strain JFW-HI SEQ_112681, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.21

Warning! 34 characters in sequence are not A, C, G, or T


Found at i:464 original size:16 final size:18

Alignment explanation


    Indices: 443--479  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        433 AGTGATAAGT

                              
        443 ATTAAT-AG-TAATATTA
          1 ATTAATCAGATAATATTA

                               
        459 ATTAATCAGAATAATATTA
          1 ATTAATCAG-ATAATATTA

              
        478 AT
          1 AT

        480 AACGGACGGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  16    6  0.33
  17    2  0.11
  19   10  0.56

ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41


Consensus pattern (18 bp):   
ATTAATCAGATAATATTA
Done.