Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012883.1 Kokia drynarioides strain JFW-HI SEQ_127897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3809
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33


Found at i:822 original size:39 final size:38

Alignment explanation


    Indices: 731--823  Score: 98
    Period size: 39  Copynumber: 2.4  Consensus size: 38

        721 CACTCAATGG

                           *                     *
        731 ATACCT-TTTGAAGAATCACAACCCTTTCAAATTGAAT
          1 ATACCTCTTTGAAGAGTCACAACCCTTTCAAATTGAAC

             *  *                           *    *  
        768 AGACATCTTTTGAAGAGTCACAACCCTTTTCATATTGGAC
          1 ATACCTC-TTTGAAGAGTCACAACCC-TTTCAAATTGAAC

                     *      
        808 ATACCTCTTGGAAGAG
          1 ATACCTCTTTGAAGAG

        824 ACTTGTCTCA


Statistics
Matches: 44,  Mismatches: 9, Indels: 4
        0.77            0.16        0.07

Matches are distributed among these distances:
  37    4  0.09
  39   25  0.57
  40   15  0.34

ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31


Consensus pattern (38 bp):   
ATACCTCTTTGAAGAGTCACAACCCTTTCAAATTGAAC
Done.