Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012884.1 Kokia drynarioides strain JFW-HI SEQ_127898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5522
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32


Found at i:5397 original size:14 final size:14

Alignment explanation


    Indices: 5367--5396  Score: 53
    Period size: 13  Copynumber: 2.2  Consensus size: 14

       5357 TTAAAAATGC

                          
       5367 AAATAATAAAATAA
          1 AAATAATAAAATAA

                          
       5381 AAATAA-AAAATAA
          1 AAATAATAAAATAA

               
       5394 AAA
          1 AAA

       5397 AATGGCTAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   10  0.62
  14    6  0.38

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (14 bp):   
AAATAATAAAATAA
Done.