Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012885.1 Kokia drynarioides strain JFW-HI SEQ_127899, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3116
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30


Found at i:2160 original size:21 final size:21

Alignment explanation


    Indices: 2134--2176  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2124 TAGGGTCCAT

                         *  *    
       2134 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCCGGAGGAATAAAGTA

                  *              
       2155 TTGCCCGGGAGGAATAAAGTA
          1 TTGCCCCGGAGGAATAAAGTA

             
       2176 T
          1 T

       2177 CACGATGGCT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.28, C:0.16, G:0.35, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAAAGTA

Found at i:2297 original size:45 final size:46

Alignment explanation


    Indices: 2189--2307  Score: 127
    Period size: 45  Copynumber: 2.6  Consensus size: 46

       2179 CGATGGCTCG

                   *              **                   *   
       2189 TCAAACTCAGCCTGATATCCTTCCCTTGAGTATTACGGTGGCTCGTA
          1 TCAAACTGAGCCTGATATCCTTGGCTTGAGTATTACGGTGGC-AGTA

                 *    *  *                    *           
       2236 --AAATTGAGGCTAATATCCTTGGCTTGAGTATTGCGGTGG-AGTA
          1 TCAAACTGAGCCTGATATCCTTGGCTTGAGTATTACGGTGGCAGTA

                      *                  
       2279 TCAAACTGAGTCTGATATCCTTGGCTTGA
          1 TCAAACTGAGCCTGATATCCTTGGCTTGA

       2308 TGAGCTATGC


Statistics
Matches: 59,  Mismatches: 11, Indels: 6
        0.78            0.14        0.08

Matches are distributed among these distances:
  43    3  0.05
  45   56  0.95

ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33


Consensus pattern (46 bp):   
TCAAACTGAGCCTGATATCCTTGGCTTGAGTATTACGGTGGCAGTA
Done.