genome.fa.s12894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012894.1 Kokia drynarioides strain JFW-HI SEQ_127908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72657

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671--715	24	1.9	24	90	4	74	46	0	0	53	1.00
687--749	17	3.6	17	86	4	81	42	0	4	52	1.22
678--749	6	12.2	6	75	7	58	43	0	4	52	1.20
687--768	34	2.4	35	83	6	96	40	1	6	52	1.34
701--776	17	4.8	15	73	19	57	39	1	6	52	1.36
800--875	40	1.9	40	94	0	134	43	26	13	17	1.85
2362--2431	30	2.4	30	74	11	72	37	24	2	35	1.70
2426--2600	30	5.9	29	83	9	178	36	25	4	34	1.76
2396--2579	60	3.1	60	84	6	180	38	24	3	34	1.72
2423--3024	29	20.7	29	72	14	298	34	24	5	35	1.79
2441--2636	60	3.3	59	84	9	215	34	25	5	35	1.78
2447--2884	88	5.0	87	73	15	251	36	23	4	35	1.76
2455--2664	30	7.1	29	79	10	153	33	24	5	36	1.78
2659--2764	30	3.6	28	74	14	88	35	20	4	38	1.74
2670--2826	59	2.7	58	79	8	140	38	21	3	36	1.72
6299--6353	6	9.2	6	78	6	58	43	0	3	52	1.18
6305--6367	17	3.6	17	80	2	72	41	0	6	52	1.27
6305--6353	18	2.7	18	87	6	64	42	0	4	53	1.20
6298--6382	12	7.2	12	67	11	59	41	0	4	54	1.21
6403--6478	40	1.9	40	91	0	125	43	25	13	18	1.86
9511--9564	23	2.3	23	90	0	90	25	22	22	29	1.99
10259--10297	11	3.5	11	86	6	53	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10259--10308	20	2.5	20	83	6	57	0	20	0	80	0.72
10278--10370	41	2.2	43	83	5	111	10	15	4	69	1.31
12838--12871	16	2.2	16	94	5	61	20	0	11	67	1.21
13236--13308	29	2.6	28	77	18	71	73	0	5	20	1.02
25382--26482	39	28.3	39	70	10	561	24	30	20	24	1.98
25380--25991	78	7.9	78	84	3	714	25	30	20	23	1.99
25848--26482	156	4.1	154	82	4	670	24	31	20	24	1.98
26952--26994	18	2.4	17	88	7	59	39	0	4	55	1.20
26924--27025	46	2.2	47	83	10	122	38	1	6	52	1.39
27046--27151	40	2.7	40	95	0	194	40	24	11	23	1.87
27673--27733	22	3.0	22	80	17	69	59	0	1	39	1.08
28534--29079	29	18.6	28	71	16	267	37	24	2	34	1.69
28533--29079	88	6.2	85	72	16	300	37	24	2	35	1.69
28596--29059	59	7.9	58	73	15	234	38	24	2	34	1.70
29085--29276	29	6.6	29	72	11	108	32	26	5	34	1.80
29085--29292	58	3.6	59	75	12	155	33	26	5	33	1.80
31832--31865	17	2.0	17	88	0	50	64	5	5	23	1.38
32687--32743	23	2.5	23	94	0	96	22	22	26	28	1.99
33494--33541	11	4.1	11	82	15	60	2	10	4	83	0.87
47672--47788	30	3.9	30	80	7	112	35	23	2	38	1.69
47675--47788	60	1.9	60	80	3	131	35	22	2	38	1.69
47676--48046	29	12.6	30	65	19	124	33	25	3	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47745--48023	58	4.7	58	77	10	250	31	25	4	37	1.77
47745--48023	117	2.4	117	80	11	288	31	25	4	37	1.77
47981--48086	29	3.7	29	69	20	78	30	29	3	36	1.75
47981--48050	30	2.4	31	79	15	78	34	27	0	38	1.57
52800--53627	39	21.3	39	69	11	358	25	29	19	25	1.98
52798--53627	78	10.7	78	76	6	587	25	29	19	25	1.98
52798--53277	155	3.1	152	80	6	491	26	30	19	24	1.98
52799--53569	233	3.3	233	77	5	619	25	29	19	25	1.99
54073--54148	17	4.4	17	86	1	89	38	0	7	53	1.30
54085--54162	17	4.6	17	83	10	88	38	1	8	51	1.42
55811--55991	30	6.1	31	78	13	161	37	28	3	30	1.73
55825--56356	29	18.1	29	70	14	208	33	25	5	35	1.79
56070--56241	30	5.8	29	75	13	140	37	25	1	35	1.66
56050--56241	59	3.2	59	78	12	189	36	24	1	37	1.65

Tables:   1

The End!