Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012898.1 Kokia drynarioides strain JFW-HI SEQ_127912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12486
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:1172 original size:8 final size:8
Alignment explanation
Indices: 1159--1194 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
1149 TTAAAAATTA
1159 TATTTAAT
1 TATTTAAT
1167 TATTTAAT
1 TATTTAAT
1175 TATTTAAT
1 TATTTAAT
1183 TATTTAAT
1 TATTTAAT
1191 TATT
1 TATT
1195 GTCGAAACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTTAAT
Found at i:1849 original size:96 final size:96
Alignment explanation
Indices: 1665--1856 Score: 262
Period size: 96 Copynumber: 2.0 Consensus size: 96
1655 ACTTTTGCAA
* ** * *
1665 AAGGATATTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAATATTTCA
1 AAGGATATTCGATTATCTCAATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCGCAAAATTTCA
*
1730 AAATCGAAGATAAGGAAACATTGCCTCGATT
66 AAATCGAAGATAAAGAAACATTGCCTCGATT
* * *
1761 AAGGGTATTCGATTATTTCAATTTGAAGAAAAATTACACCTAGTGAGTTAAGGCGCAAAATTTCA
1 AAGGATATTCGATTATCTCAATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCGCAAAATTTCA
*
1826 AAACTCGAA-ATAAA-AGAATATTGCCTCGATT
66 AAA-TCGAAGATAAAGA-AACATTGCCTCGATT
1857 TTTAAAGCTT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
95 1 0.01
96 78 0.93
97 5 0.06
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (96 bp):
AAGGATATTCGATTATCTCAATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCGCAAAATTTCA
AAATCGAAGATAAAGAAACATTGCCTCGATT
Found at i:2144 original size:29 final size:29
Alignment explanation
Indices: 2091--2406 Score: 211
Period size: 29 Copynumber: 10.7 Consensus size: 29
2081 CCCGAGGGGC
*
2091 AAAATGGGAATTTTGGGAAAGTTCGGGGTTA
1 AAAAT-GGAATTTTTGG-AAGTTCGGGGTTA
* *
2122 AAAATGGAATTTTTAGACA-TTCGGGGAT-
1 AAAATGGAATTTTTGGA-AGTTCGGGGTTA
* * **
2150 AAAAGGGTAA-TTTT-GAGAGCTTCGAGGTCG
1 AAAATGG-AATTTTTGGA-AG-TTCGGGGTTA
* * *
2180 AAAATGGAGTTTTTGGACA-TCCGGGGGT-
1 AAAATGGAATTTTTGGA-AGTTCGGGGTTA
* *
2208 AAAATGGTAATTTTTGGAAGTTTCGGTGTCA
1 AAAATGG-AATTTTTGGAAG-TTCGGGGTTA
* *
2239 AAAATGGAATTTTTGGAAGTTTCGAGGTCA
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
*
2269 AAAATGGGATTTTTGGAAGTTCGAGGG-TA
1 AAAATGGAATTTTTGGAAGTTCG-GGGTTA
* *
2298 AAAATGGGATTTTTGGAAGTTCGAGGG-TG
1 AAAATGGAATTTTTGGAAGTTCG-GGGTTA
* **
2327 AAAATGAAATTTTTGGAAGTTTTAGGG-TA
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
* *
2356 AAAATTGAGATTTTTGGAAGTTCGAGG-TA
1 AAAATGGA-ATTTTTGGAAGTTCGGGGTTA
**
2385 AAAATATAATTTTTGGACAGTT
1 AAAATGGAATTTTTGGA-AGTT
2407 TAGGGACCTC
Statistics
Matches: 232, Mismatches: 38, Indels: 32
0.77 0.13 0.11
Matches are distributed among these distances:
27 3 0.01
28 27 0.12
29 108 0.47
30 79 0.34
31 15 0.06
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.33
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTCGGGGTTA
Found at i:4172 original size:25 final size:25
Alignment explanation
Indices: 4094--4177 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
4084 TAGGCTTAGG
*
4094 GTATTTGGGCTGACTTGGGCCATTT
1 GTATTTGGGCTGGCTTGGGCCATTT
* ** *
4119 GTAATTTAGTATGGCATTTGGGTCA--T
1 GT-ATTTGGGCTGGC--TTGGGCCATTT
4145 GTATTTGGGCTGGCTTGGGCCATTT
1 GTATTTGGGCTGGCTTGGGCCATTT
*
4170 GTAATTGG
1 GTATTTGG
4178 ACATTGTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 10
0.69 0.16 0.16
Matches are distributed among these distances:
23 7 0.16
25 19 0.43
26 11 0.25
28 7 0.16
ACGTcount: A:0.15, C:0.12, G:0.32, T:0.40
Consensus pattern (25 bp):
GTATTTGGGCTGGCTTGGGCCATTT
Found at i:4231 original size:6 final size:6
Alignment explanation
Indices: 4199--4275 Score: 65
Period size: 6 Copynumber: 13.3 Consensus size: 6
4189 TTGAACTTTT
* *
4199 TTTAAT TTTGAAA -TTAAA TTGTAAA TTTAAA -TTAAA TTTAAA TTTAGA
1 TTTAAA TTT-AAA TTTAAA TT-TAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
4247 -TT-AA TTTAAA TTTAAA -ATAAA TCTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
4276 AAAAAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
4 1 0.02
5 16 0.28
6 33 0.57
7 8 0.14
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:4236 original size:11 final size:11
Alignment explanation
Indices: 4220--4278 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
4210 AATTAAATTG
4220 TAAATTTAAAT
1 TAAATTTAAAT
4231 TAAATTTAAATT
1 TAAATTTAAA-T
* *
4243 TAGA-TTAATT
1 TAAATTTAAAT
*
4253 TAAATTTAAAA
1 TAAATTTAAAT
*
4264 TAAATCTAAAT
1 TAAATTTAAAT
4275 TAAA
1 TAAA
4279 AAAAAAGGCC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
10 4 0.10
11 31 0.79
12 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
TAAATTTAAAT
Found at i:4242 original size:17 final size:17
Alignment explanation
Indices: 4199--4275 Score: 93
Period size: 17 Copynumber: 4.5 Consensus size: 17
4189 TTGAACTTTT
*
4199 TTTAATTTTGAAATTAAA
1 TTTAAATTT-AAATTAAA
4217 TTGTAAATTTAAATTAAA
1 TT-TAAATTTAAATTAAA
*
4235 TTTAAATTTAGATT-AA
1 TTTAAATTTAAATTAAA
*
4251 TTTAAATTTAAAATAAA
1 TTTAAATTTAAATTAAA
*
4268 TCTAAATT
1 TTTAAATT
4276 AAAAAAAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.27
17 20 0.38
18 12 0.23
19 6 0.12
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (17 bp):
TTTAAATTTAAATTAAA
Found at i:4267 original size:27 final size:27
Alignment explanation
Indices: 4222--4277 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
4212 TTAAATTGTA
* * *
4222 AATTTAAATTAAATTTAAATTTAGATT
1 AATTTAAATTAAATATAAATCTAAATT
4249 AATTTAAATTTAAA-ATAAATCTAAATT
1 AATTTAAA-TTAAATATAAATCTAAATT
4276 AA
1 AA
4278 AAAAAAAGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
AATTTAAATTAAATATAAATCTAAATT
Found at i:5005 original size:205 final size:204
Alignment explanation
Indices: 4601--5158 Score: 895
Period size: 204 Copynumber: 2.7 Consensus size: 204
4591 ACTTAGTCTT
* * *
4601 CTTCTCAGTATCTTATCAGGAAGAC-GACCTTTTATTGCTTCGACCTGCTTCTTAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAG-CTAACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
* *
4665 AAGAAGC-CGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGACTTGATCTTCTTCTCAGTA
65 AAGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTA
* * * *
4729 TCTCATCAGGAAGATGACCACGTTGTTCGTTTCAATCTGCTTCTCTGTATCTCATCGGGAAGACG
130 TCTCATCAGGAAGATGACC-GGTTGTTCGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACA
4794 AATTTGGTCCA
194 AATTTGGTCCA
* *
4805 CTTCTCAGTATCTCATCGGGAAGCTAACCTTTTTTTTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACC-TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
*
4870 AGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTA
65 AAGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTA
* *
4935 TCTCATTAGGAAGATGACCGGTTGTTTGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACAA
130 TCTCATCAGGAAGATGACCGGTTGTTCGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACAA
5000 ATTTGGTCCA
195 ATTTGGTCCA
* *
5010 CTTCTCAGTATCTCATCAGGAAGCTAGCCTTTTATTGCTTCGACCTTCTTCTCAGTATCTCATCA
1 CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
*** *
5075 AGAAGCTGAAATTCGAAGATTTGCTCACATCGAGCGCGGGCTTGACTTGATCTTCTTCTCAGTAT
66 AGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTAT
5140 CTCATCAGGAAGATGACCG
131 CTCATCAGGAAGATGACCG
5159 CGTCATTTGT
Statistics
Matches: 327, Mismatches: 24, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
203 1 0.00
204 136 0.42
205 117 0.36
206 73 0.22
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.34
Consensus pattern (204 bp):
CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
AGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTAT
CTCATCAGGAAGATGACCGGTTGTTCGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACAAA
TTTGGTCCA
Found at i:7511 original size:8 final size:8
Alignment explanation
Indices: 7498--7533 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
7488 TTAAAAATTA
7498 TATTTAAT
1 TATTTAAT
7506 TATTTAAT
1 TATTTAAT
7514 TATTTAAT
1 TATTTAAT
7522 TATTTAAT
1 TATTTAAT
7530 TATT
1 TATT
7534 GTCGAAACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTTAAT
Found at i:8188 original size:96 final size:96
Alignment explanation
Indices: 8004--8195 Score: 262
Period size: 96 Copynumber: 2.0 Consensus size: 96
7994 ACTTTTGCAA
* ** * *
8004 AAGGATATTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCGCAATATTTCA
1 AAGGATATTCGATTATCTCAATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCGCAAAATTTCA
*
8069 AAATCGAAGATAAGGAAACATTGCCTCGATT
66 AAATCGAAGATAAAGAAACATTGCCTCGATT
* * *
8100 AAGGGTATTCGATTATTTCAATTTGAAGAAAAATTACACCTAGTGAGTTAAGGCGCAAAATTTCA
1 AAGGATATTCGATTATCTCAATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCGCAAAATTTCA
*
8165 AAACTCGAA-ATAAA-AGAATATTGCCTCGATT
66 AAA-TCGAAGATAAAGA-AACATTGCCTCGATT
8196 TTTAAAGCTT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
95 1 0.01
96 78 0.93
97 5 0.06
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.29
Consensus pattern (96 bp):
AAGGATATTCGATTATCTCAATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCGCAAAATTTCA
AAATCGAAGATAAAGAAACATTGCCTCGATT
Found at i:8483 original size:29 final size:29
Alignment explanation
Indices: 8430--8745 Score: 211
Period size: 29 Copynumber: 10.7 Consensus size: 29
8420 CCCGAGGGGC
*
8430 AAAATGGGAATTTTGGGAAAGTTCGGGGTTA
1 AAAAT-GGAATTTTTGG-AAGTTCGGGGTTA
* *
8461 AAAATGGAATTTTTAGACA-TTCGGGGAT-
1 AAAATGGAATTTTTGGA-AGTTCGGGGTTA
* * **
8489 AAAAGGGTAA-TTTT-GAGAGCTTCGAGGTCG
1 AAAATGG-AATTTTTGGA-AG-TTCGGGGTTA
* * *
8519 AAAATGGAGTTTTTGGACA-TCCGGGGGT-
1 AAAATGGAATTTTTGGA-AGTTCGGGGTTA
* *
8547 AAAATGGTAATTTTTGGAAGTTTCGGTGTCA
1 AAAATGG-AATTTTTGGAAG-TTCGGGGTTA
* *
8578 AAAATGGAATTTTTGGAAGTTTCGAGGTCA
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
*
8608 AAAATGGGATTTTTGGAAGTTCGAGGG-TA
1 AAAATGGAATTTTTGGAAGTTCG-GGGTTA
* *
8637 AAAATGGGATTTTTGGAAGTTCGAGGG-TG
1 AAAATGGAATTTTTGGAAGTTCG-GGGTTA
* **
8666 AAAATGAAATTTTTGGAAGTTTTAGGG-TA
1 AAAATGGAATTTTTGGAAG-TTCGGGGTTA
* *
8695 AAAATTGAGATTTTTGGAAGTTCGAGG-TA
1 AAAATGGA-ATTTTTGGAAGTTCGGGGTTA
**
8724 AAAATATAATTTTTGGACAGTT
1 AAAATGGAATTTTTGGA-AGTT
8746 TAGGGACCTC
Statistics
Matches: 232, Mismatches: 38, Indels: 32
0.77 0.13 0.11
Matches are distributed among these distances:
27 3 0.01
28 27 0.12
29 108 0.47
30 79 0.34
31 15 0.06
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.33
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTCGGGGTTA
Found at i:10511 original size:25 final size:25
Alignment explanation
Indices: 10433--10516 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
10423 TAGGCTTAGG
*
10433 GTATTTGGGCTGACTTGGGCCATTT
1 GTATTTGGGCTGGCTTGGGCCATTT
* ** *
10458 GTAATTTAGTATGGCATTTGGGTCA--T
1 GT-ATTTGGGCTGGC--TTGGGCCATTT
10484 GTATTTGGGCTGGCTTGGGCCATTT
1 GTATTTGGGCTGGCTTGGGCCATTT
*
10509 GTAATTGG
1 GTATTTGG
10517 ACATTGTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 10
0.69 0.16 0.16
Matches are distributed among these distances:
23 7 0.16
25 19 0.43
26 11 0.25
28 7 0.16
ACGTcount: A:0.15, C:0.12, G:0.32, T:0.40
Consensus pattern (25 bp):
GTATTTGGGCTGGCTTGGGCCATTT
Found at i:10570 original size:6 final size:6
Alignment explanation
Indices: 10538--10614 Score: 65
Period size: 6 Copynumber: 13.3 Consensus size: 6
10528 TTGAACTTTT
* *
10538 TTTAAT TTTGAAA -TTAAA TTGTAAA TTTAAA -TTAAA TTTAAA TTTAGA
1 TTTAAA TTT-AAA TTTAAA TT-TAAA TTTAAA TTTAAA TTTAAA TTTAAA
* *
10586 -TT-AA TTTAAA TTTAAA -ATAAA TCTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT
10615 AAAAAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
4 1 0.02
5 16 0.28
6 33 0.57
7 8 0.14
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (6 bp):
TTTAAA
Found at i:10575 original size:11 final size:11
Alignment explanation
Indices: 10559--10617 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
10549 AATTAAATTG
10559 TAAATTTAAAT
1 TAAATTTAAAT
10570 TAAATTTAAATT
1 TAAATTTAAA-T
* *
10582 TAGA-TTAATT
1 TAAATTTAAAT
*
10592 TAAATTTAAAA
1 TAAATTTAAAT
*
10603 TAAATCTAAAT
1 TAAATTTAAAT
10614 TAAA
1 TAAA
10618 AAAAAAGGCC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
10 4 0.10
11 31 0.79
12 4 0.10
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
TAAATTTAAAT
Found at i:10581 original size:17 final size:17
Alignment explanation
Indices: 10538--10614 Score: 93
Period size: 17 Copynumber: 4.5 Consensus size: 17
10528 TTGAACTTTT
*
10538 TTTAATTTTGAAATTAAA
1 TTTAAATTT-AAATTAAA
10556 TTGTAAATTTAAATTAAA
1 TT-TAAATTTAAATTAAA
*
10574 TTTAAATTTAGATT-AA
1 TTTAAATTTAAATTAAA
*
10590 TTTAAATTTAAAATAAA
1 TTTAAATTTAAATTAAA
*
10607 TCTAAATT
1 TTTAAATT
10615 AAAAAAAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.27
17 20 0.38
18 12 0.23
19 6 0.12
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (17 bp):
TTTAAATTTAAATTAAA
Found at i:10606 original size:27 final size:27
Alignment explanation
Indices: 10561--10616 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
10551 TTAAATTGTA
* * *
10561 AATTTAAATTAAATTTAAATTTAGATT
1 AATTTAAATTAAATATAAATCTAAATT
10588 AATTTAAATTTAAA-ATAAATCTAAATT
1 AATTTAAA-TTAAATATAAATCTAAATT
10615 AA
1 AA
10617 AAAAAAAGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (27 bp):
AATTTAAATTAAATATAAATCTAAATT
Found at i:11344 original size:205 final size:204
Alignment explanation
Indices: 10940--11497 Score: 895
Period size: 204 Copynumber: 2.7 Consensus size: 204
10930 ACTTAGTCTT
* * *
10940 CTTCTCAGTATCTTATCAGGAAGAC-GACCTTTTATTGCTTCGACCTGCTTCTTAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAG-CTAACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
* *
11004 AAGAAGC-CGGGTTCGAAGATTTGCTCACATCGAGCGTGGGTTTGACTTGATCTTCTTCTCAGTA
65 AAGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTA
* * * *
11068 TCTCATCAGGAAGATGACCACGTTGTTCGTTTCAATCTGCTTCTCTGTATCTCATCGGGAAGACG
130 TCTCATCAGGAAGATGACC-GGTTGTTCGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACA
11133 AATTTGGTCCA
194 AATTTGGTCCA
* *
11144 CTTCTCAGTATCTCATCGGGAAGCTAACCTTTTTTTTGCTTCGACCTGCTTCTCAGTATCTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACC-TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATC
*
11209 AGGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTA
65 AAGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTA
* *
11274 TCTCATTAGGAAGATGACCGGTTGTTTGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACAA
130 TCTCATCAGGAAGATGACCGGTTGTTCGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACAA
11339 ATTTGGTCCA
195 ATTTGGTCCA
* *
11349 CTTCTCAGTATCTCATCAGGAAGCTAGCCTTTTATTGCTTCGACCTTCTTCTCAGTATCTCATCA
1 CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
*** *
11414 AGAAGCTGAAATTCGAAGATTTGCTCACATCGAGCGCGGGCTTGACTTGATCTTCTTCTCAGTAT
66 AGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTAT
11479 CTCATCAGGAAGATGACCG
131 CTCATCAGGAAGATGACCG
11498 CGTCATTTGT
Statistics
Matches: 327, Mismatches: 24, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
203 1 0.00
204 136 0.42
205 117 0.36
206 73 0.22
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.34
Consensus pattern (204 bp):
CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCA
AGAAGCTGGGGTTCGAAGATTTGCTCACATCGAGCGTGGGCTTGACTTGATCTTCTTCTCAGTAT
CTCATCAGGAAGATGACCGGTTGTTCGTTGCAATCCGCTTCTCTGTATCTCATCGGGAAGACAAA
TTTGGTCCA
Done.