Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012899.1 Kokia drynarioides strain JFW-HI SEQ_127913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2174
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:159 original size:80 final size:79

Alignment explanation


    Indices: 25--178  Score: 236
    Period size: 80  Copynumber: 1.9  Consensus size: 79

         15 AAATGTCATG

                    *                                   * *  *               
         25 CCTTTTCAGCTACATCAGATCCTAATGAAGAGACATGACTCATTGGTTTTCCTACAAGAGTTAAA
          1 CCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTT-AA

                           
         90 AACGAAATTACCATC
         65 AACGAAATTACCATC

                  *      *                                                   
        105 CCTTTTTAACTACTTCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTAAA
          1 CCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTAAA

             *       
        170 ATGAAATTA
         66 ACGAAATTA

        179 GTGTTTGTAT


Statistics
Matches: 67,  Mismatches: 7, Indels: 1
        0.89            0.09        0.01

Matches are distributed among these distances:
  79   11  0.16
  80   56  0.84

ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30


Consensus pattern (79 bp):   
CCTTTTCAACTACATCAGATCCTAATGAAGAGACATGACTCATTAGCTTCCCTACAAGAGTTAAA
ACGAAATTACCATC
Done.