genome.fa.s12906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012906.1 Kokia drynarioides strain JFW-HI SEQ_127920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90742

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6804--7266	157	2.9	158	83	2	540	25	21	23	29	1.99
9266--9396	41	3.2	41	85	2	174	38	24	23	12	1.90
9389--9443	24	2.3	24	87	6	76	34	25	20	20	1.96
9542--9584	19	2.3	19	87	0	59	58	2	0	39	1.11
11210--11254	22	2.0	22	86	4	63	13	13	11	62	1.55
13568--13607	21	1.9	21	89	0	62	37	7	35	20	1.81
13589--13701	43	2.7	42	80	2	136	26	14	27	31	1.94
17954--18127	96	1.8	96	82	7	228	35	13	21	29	1.91
18340--18402	28	2.2	28	82	2	72	26	11	28	33	1.91
18535--18695	29	5.5	29	84	7	175	29	1	29	38	1.68
18506--18734	59	3.8	59	85	2	307	29	2	29	38	1.69
18472--18735	30	8.9	29	80	8	266	29	2	30	37	1.70
19682--19755	3	23.0	3	77	13	67	35	4	4	56	1.37
20462--20550	45	2.0	45	95	0	160	14	14	31	39	1.87
20571--20641	17	4.1	17	83	1	79	53	1	1	43	1.18
24599--24638	15	2.7	15	88	0	62	57	5	5	32	1.42
24695--24720	13	2.0	13	100	0	52	38	0	0	61	0.96
27198--27244	20	2.2	23	74	18	55	55	19	10	14	1.68
27205--27245	20	2.0	21	90	4	66	53	14	12	19	1.72
27589--27653	27	2.4	28	82	7	80	36	21	15	26	1.93
27639--27777	28	5.0	27	75	10	129	29	19	18	32	1.96
27615--27778	28	6.0	28	72	14	90	31	19	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27615--27778	54	3.0	54	81	11	181	31	19	18	31	1.96
40418--40449	12	2.7	12	90	0	55	15	0	3	81	0.82
43733--43775	21	2.0	21	95	0	77	39	30	9	20	1.84
44362--44406	14	3.1	14	87	6	63	77	0	4	17	0.92
44341--44392	21	2.4	21	84	9	61	75	1	5	17	1.10
51519--51614	12	8.3	12	70	13	67	66	17	6	9	1.40
51506--51597	44	2.1	44	83	4	114	66	17	5	10	1.41
51518--51608	44	2.1	44	81	4	103	67	17	6	8	1.39
52477--52672	30	6.6	30	80	4	159	36	2	26	34	1.70
52522--52672	59	2.6	59	86	4	209	33	2	27	35	1.71
52544--52671	29	4.4	28	78	6	94	35	3	27	34	1.73
52603--52671	29	2.4	29	87	2	95	37	4	23	34	1.75
53342--53367	11	2.4	11	100	0	52	0	15	0	84	0.62
54252--54340	21	4.3	21	87	5	121	67	21	5	5	1.33
54735--54799	31	2.1	31	94	0	112	23	20	9	47	1.78
56090--56160	14	5.1	14	69	6	54	32	16	7	43	1.75
56100--56147	15	3.3	15	73	5	53	39	16	2	41	1.60
56151--56209	28	2.1	29	78	12	70	23	5	11	59	1.52
56164--56375	28	7.6	28	80	1	183	22	17	10	49	1.78
56164--56375	56	3.8	56	83	3	239	22	17	10	49	1.78
56219--56375	84	1.9	83	86	4	226	22	20	10	47	1.80
56857--56895	21	1.9	20	84	5	51	43	25	0	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61790--61815	2	13.0	2	100	0	52	0	50	0	50	1.00
68081--68337	33	7.8	33	68	9	157	26	31	22	20	1.98
68084--68369	66	4.3	66	88	3	371	26	31	22	20	1.98
68186--68369	33	5.6	32	69	15	115	26	32	22	19	1.97
68376--68729	33	10.7	33	85	1	224	33	31	14	20	1.92
68122--68442	132	2.4	132	80	2	304	28	31	20	20	1.97
68417--68727	66	4.7	65	83	5	331	33	32	14	19	1.92
68377--68742	99	3.7	99	76	7	350	33	32	13	19	1.91
69528--69831	33	9.4	33	88	4	440	33	14	35	16	1.90
69525--69831	129	2.4	129	90	1	479	33	14	35	16	1.89
69528--69828	96	3.1	96	91	4	455	33	14	35	16	1.89
69738--69799	18	3.6	18	72	12	58	33	11	38	16	1.84
73991--74027	2	19.5	2	83	10	51	51	2	0	45	1.15
74780--74822	3	14.0	3	80	4	50	60	0	4	34	1.17
76954--76994	20	2.0	20	85	0	55	41	9	2	46	1.50
77922--78021	27	3.7	26	69	16	69	39	13	16	32	1.86
82360--82988	315	2.0	315	91	1	1012	25	13	24	37	1.92
83316--83679	105	3.5	104	80	3	383	31	12	27	29	1.93
83316--83761	210	2.1	209	80	7	485	30	12	27	29	1.93
86975--87008	16	2.1	17	88	5	52	50	0	0	50	1.00
89373--89684	105	3.0	105	86	0	428	31	12	27	29	1.92

Tables:   1

The End!