genome.fa.s12907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012907.1 Kokia drynarioides strain JFW-HI SEQ_127921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64603

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84--126	13	2.9	16	83	16	56	81	2	11	4	0.93
563--615	17	3.1	17	94	2	88	41	0	24	33	1.55
3190--3362	23	7.5	23	84	0	175	43	24	17	13	1.85
3190--3362	46	3.8	46	85	1	215	43	24	17	13	1.85
3191--3362	69	2.5	68	82	4	220	43	25	18	13	1.86
4523--4597	6	12.7	6	88	2	98	41	0	4	54	1.19
4495--4597	35	2.9	34	84	8	118	39	0	4	55	1.21
4495--4591	17	5.6	17	81	8	115	39	0	5	55	1.22
6310--6480	29	5.9	29	70	18	113	36	27	2	33	1.70
6323--6472	59	2.6	57	86	5	196	37	29	1	32	1.66
6330--6472	29	5.0	29	80	5	157	38	27	0	33	1.62
6398--6486	28	3.1	28	75	12	92	41	23	1	33	1.62
6446--6627	30	6.2	29	71	11	120	33	22	5	38	1.77
10739--10814	24	3.1	25	77	9	86	19	34	1	44	1.59
11414--11481	28	2.4	28	87	0	91	33	7	10	48	1.65
11647--11677	15	2.1	15	93	0	53	19	22	19	38	1.93
27347--27398	12	4.2	12	72	13	52	53	1	1	42	1.23
27356--27424	25	2.8	25	78	14	63	55	1	1	42	1.18
27349--27412	20	3.4	19	80	16	71	56	1	1	40	1.18
35149--35185	17	2.2	18	80	14	51	40	0	2	56	1.13
37930--38121	90	2.1	90	98	0	366	48	14	10	25	1.76
38067--38175	56	1.9	57	88	1	166	46	12	13	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38084--38225	62	2.4	57	82	10	155	50	14	13	21	1.77
41583--41710	62	2.0	62	84	3	166	37	19	12	30	1.89
47824--47892	25	2.8	25	79	16	81	57	0	1	40	1.07
48779--48819	21	2.0	21	85	9	57	29	4	17	48	1.67
49262--49533	133	2.0	134	98	0	528	26	11	15	47	1.78
54437--54491	24	2.3	24	78	15	60	5	38	10	45	1.63
56522--56554	17	1.9	17	93	0	57	75	0	24	0	0.80
56549--56585	9	4.3	9	83	10	51	54	0	45	0	1.00
56945--56987	21	2.1	21	91	4	70	27	2	13	55	1.51
62094--62148	24	2.3	24	78	15	60	5	38	10	45	1.63
64179--64211	17	1.9	17	93	0	57	75	0	24	0	0.80
64206--64242	9	4.3	9	83	10	51	54	0	45	0	1.00

Tables:   1

The End!