genome.fa.s12913.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012913.1 Kokia drynarioides strain JFW-HI SEQ_127929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213083

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563--598	17	2.2	16	90	5	54	36	2	2	58	1.27
1320--1373	17	3.2	17	86	0	72	50	0	5	44	1.25
9915--10097	101	1.8	101	87	0	276	32	15	7	44	1.75
10607--10648	21	1.9	22	85	9	59	42	0	0	57	0.99
11050--11077	6	4.7	6	100	0	56	0	14	0	85	0.59
17340--17420	29	2.7	29	83	9	101	43	3	3	49	1.38
20054--20125	34	2.1	34	97	0	135	18	22	8	51	1.72
24834--24858	12	2.1	12	100	0	50	60	16	0	24	1.36
26152--26176	10	2.5	10	100	0	50	92	0	8	0	0.40
26261--26341	27	3.0	27	78	8	83	27	19	2	50	1.60
31078--31148	36	2.0	36	91	0	115	16	39	5	38	1.73
32368--32419	15	3.5	15	73	7	52	25	1	3	69	1.16
37366--37401	18	2.0	18	94	0	63	52	0	0	47	1.00
42046--42075	2	15.0	2	100	0	60	50	0	0	50	1.00
47293--47373	28	2.8	30	80	10	107	76	0	13	9	1.02
48762--49274	170	3.1	168	83	6	563	22	22	24	31	1.98
48972--49303	157	2.1	158	84	3	429	21	24	24	29	1.99
51203--51324	45	2.7	45	85	6	133	26	52	2	18	1.58
51252--51389	27	5.4	27	64	23	75	23	53	1	21	1.54
51269--51425	54	2.9	54	84	3	217	22	53	1	22	1.53
51239--51384	45	3.0	45	83	11	166	23	52	2	21	1.57
52520--52591	21	3.6	20	75	20	71	62	0	2	34	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52521--52555	3	12.0	3	93	6	63	68	0	0	31	0.90
52951--53183	58	4.1	58	76	13	218	32	29	4	33	1.78
52973--53186	29	7.7	29	72	14	164	30	29	5	34	1.79
53065--53117	21	2.6	21	79	8	56	32	33	1	32	1.69
53009--53160	79	1.9	80	82	6	193	32	28	4	34	1.78
53002--53201	108	1.9	108	84	4	269	31	30	5	33	1.80
53085--53208	59	2.1	58	80	7	144	32	30	5	31	1.81
64371--64725	196	1.8	195	91	1	595	36	18	22	22	1.95
64268--64912	196	3.2	206	79	8	508	36	19	22	21	1.95
67121--67513	29	13.7	29	73	13	296	33	29	4	33	1.76
67121--67473	59	6.2	59	78	7	361	33	30	3	32	1.76
67339--67381	20	2.2	20	91	0	68	27	39	2	30	1.69
67314--67411	49	2.0	50	83	2	126	32	33	3	30	1.73
67243--67437	108	1.8	108	86	2	284	34	30	3	31	1.75
67350--67475	30	4.3	29	77	9	94	32	33	3	30	1.76
68640--68680	21	2.0	21	85	0	55	60	17	4	17	1.52
69363--69428	12	5.6	12	68	22	50	42	22	1	33	1.63
74910--74980	20	3.7	19	84	7	74	53	7	1	38	1.37
74910--74964	18	2.9	19	89	5	76	50	7	0	41	1.30
78429--78471	22	2.0	21	82	17	52	20	6	9	62	1.48
78793--78826	17	2.1	17	88	5	52	64	5	2	26	1.30
101411--101444	17	2.1	17	88	5	52	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108124--108156	16	2.1	16	88	5	50	30	0	0	69	0.88
111569--111599	15	2.1	15	100	0	62	32	0	0	67	0.91
114534--114574	6	6.5	6	89	10	64	17	2	46	34	1.61
117383--117451	28	2.5	28	80	0	84	43	20	11	24	1.85
118613--118664	18	2.8	18	82	2	50	73	7	5	13	1.24
126981--127068	44	2.0	44	82	6	106	50	1	21	27	1.56
128683--128721	6	6.5	6	87	0	51	46	0	30	23	1.53
130165--130214	18	2.6	20	78	15	61	42	6	30	22	1.77
133206--133241	16	2.2	16	100	0	72	44	0	16	38	1.48
137594--137619	13	2.0	13	100	0	52	15	23	23	38	1.92
144437--144493	29	2.0	28	89	3	87	36	0	3	59	1.14
146975--147007	14	2.2	16	89	10	52	60	3	0	36	1.12
148809--148923	51	2.2	52	86	4	162	34	21	13	30	1.91
148834--148932	51	1.9	51	95	0	180	32	21	12	34	1.90
151960--151985	2	13.0	2	100	0	52	50	0	0	50	1.00
154213--154258	23	2.0	23	91	0	74	30	0	2	67	1.03
155444--155484	18	2.3	18	84	12	50	36	7	9	46	1.65
156035--156086	21	2.5	21	81	6	61	21	13	26	38	1.90
161870--162049	52	3.5	52	92	0	288	26	15	24	33	1.95
166635--166752	62	2.0	61	88	5	177	50	4	3	41	1.38
167771--167795	13	1.9	13	100	0	50	24	32	16	28	1.96
167843--167885	18	2.4	18	84	11	61	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176695--176736	21	2.0	21	86	9	59	59	33	7	0	1.25
178454--178527	29	2.5	30	86	8	98	50	14	14	20	1.78
182258--182386	22	5.9	21	81	10	116	13	24	23	39	1.90
182258--182386	44	2.9	44	84	2	170	13	24	23	39	1.90
185412--185457	24	1.9	24	90	0	74	65	0	2	32	1.05
188452--188486	17	2.1	17	88	0	52	51	0	0	48	1.00
189214--189317	52	2.0	51	85	5	138	30	6	21	41	1.79
192986--193185	74	2.7	74	89	3	314	48	5	27	18	1.70
193609--193658	16	3.3	15	84	13	66	48	2	4	46	1.32
193608--193665	15	3.7	15	80	17	64	48	1	3	46	1.29
202930--202968	20	2.0	20	89	0	60	0	33	0	66	0.92
210353--210594	87	2.8	85	82	7	240	32	28	15	23	1.95
210353--210598	43	5.7	42	79	9	230	32	28	15	23	1.95
210896--211128	117	2.0	116	96	1	432	49	13	10	26	1.73

Tables:   1

The End!