Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012917.1 Kokia drynarioides strain JFW-HI SEQ_127933, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5508
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:4524 original size:50 final size:50

Alignment explanation


    Indices: 4410--4583  Score: 303
    Period size: 50  Copynumber: 3.5  Consensus size: 50

       4400 CATTTAATAT

                         *                     *  *            
       4410 TCACGATGACACTGAGTCATCGGACCTTTAATCCATCATGGATTCATTTAC
          1 TCACGATGACACTTAGTCATCGGACCTTTAATCC-GCAAGGATTCATTTAC

                                                              
       4461 TCACGATGACACTTAGTCATCGGACCTTTAATCCGCAAGGATTCATTTAC
          1 TCACGATGACACTTAGTCATCGGACCTTTAATCCGCAAGGATTCATTTAC

                                 *                            
       4511 TCACGATGACACTTAGTCATCAGACCTTTAATCCGCAAGGATTCATTTAC
          1 TCACGATGACACTTAGTCATCGGACCTTTAATCCGCAAGGATTCATTTAC

                                   
       4561 TCACGATGACACTTAGTCATCGG
          1 TCACGATGACACTTAGTCATCGG

       4584 GACCCTTTCG


Statistics
Matches: 118,  Mismatches: 5, Indels: 1
        0.95            0.04        0.01

Matches are distributed among these distances:
  50   85  0.72
  51   33  0.28

ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30


Consensus pattern (50 bp):   
TCACGATGACACTTAGTCATCGGACCTTTAATCCGCAAGGATTCATTTAC
Done.