genome.fa.s12918.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012918.1 Kokia drynarioides strain JFW-HI SEQ_127934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  211897

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103--1141	15	2.4	16	83	12	53	33	0	5	61	1.18
12450--12496	18	2.6	18	80	6	51	34	12	27	25	1.92
15304--15431	64	2.0	64	98	0	247	50	23	8	17	1.73
15821--15865	23	2.0	23	90	0	72	15	2	35	46	1.58
16446--16488	18	2.4	18	84	0	50	58	2	23	16	1.50
16547--16614	21	3.5	19	66	22	52	48	4	0	47	1.22
16532--16628	37	2.6	38	91	4	153	48	3	0	48	1.17
16868--16933	28	2.4	28	85	7	82	24	15	7	53	1.68
17305--17333	14	2.1	14	100	0	58	24	6	20	48	1.74
19946--19988	20	2.2	20	100	0	86	27	9	23	39	1.85
26796--26830	18	1.9	18	88	0	52	40	11	22	25	1.88
30557--30616	20	3.0	20	82	9	59	55	10	5	30	1.54
49994--50041	24	1.9	26	83	8	64	68	8	16	6	1.35
61914--61959	22	2.1	22	100	0	92	41	13	8	36	1.75
63258--63307	24	2.1	23	82	10	57	34	6	2	58	1.34
63277--63449	57	2.9	56	81	11	188	43	1	1	52	1.21
65597--65638	21	2.0	21	95	0	75	45	16	4	33	1.69
67454--67520	22	3.0	22	73	16	57	37	2	1	58	1.23
67594--67635	21	1.9	21	85	9	57	42	4	11	40	1.63
70524--70564	18	2.2	19	91	4	66	2	17	0	80	0.82
79761--79834	36	2.1	36	100	0	148	48	18	5	27	1.70
93768--94231	231	2.0	232	96	1	851	35	20	14	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99523--100032	150	3.3	150	87	4	675	42	9	3	43	1.54
99666--99920	51	5.1	51	68	15	145	44	9	3	42	1.54
100857--101476	42	15.1	42	80	6	662	34	23	19	22	1.97
101276--101334	31	1.9	31	85	0	82	25	28	20	25	1.99
101192--101420	115	2.0	115	88	1	343	34	25	17	23	1.96
100989--101460	157	2.9	158	83	5	558	33	24	19	22	1.97
101881--101907	8	3.4	8	100	0	54	11	11	0	77	0.99
114752--115247	151	3.3	151	90	4	788	43	10	4	42	1.58
116145--116177	15	2.2	15	100	0	66	33	27	12	27	1.92
120765--120799	6	5.8	6	100	0	70	17	68	14	0	1.21
122217--122290	30	2.5	30	100	0	148	43	2	0	54	1.14
122330--122359	14	2.1	14	93	0	51	76	3	0	20	0.92
125164--125246	4	20.5	4	75	16	73	68	0	30	1	0.97
126321--126366	14	3.1	15	71	22	51	60	8	0	30	1.26
126319--126368	16	3.2	16	73	21	61	60	8	0	32	1.26
126401--126495	30	3.2	30	67	14	79	36	6	13	43	1.70
128318--128405	45	2.0	45	95	0	158	30	30	19	19	1.96
128813--128862	21	2.4	21	93	0	82	46	28	0	26	1.53
131741--131807	4	16.2	4	76	6	62	4	29	0	65	1.12
131741--131786	16	2.8	16	96	3	83	4	34	0	60	1.16
131951--132002	27	2.0	26	81	11	61	26	36	9	26	1.87
137057--137527	205	2.3	205	82	4	547	21	22	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137372--137660	133	2.2	133	93	0	506	24	25	15	34	1.95
137513--137874	196	1.8	196	94	0	643	23	22	19	34	1.97
137167--137856	329	2.1	333	87	3	978	22	23	18	35	1.96
149718--149782	30	2.1	32	82	5	80	44	1	21	32	1.62
149834--150275	29	14.9	27	71	18	235	32	1	28	38	1.66
149834--150275	59	7.4	60	84	5	508	32	1	28	38	1.66
151337--151390	26	2.0	27	85	3	74	42	1	0	55	1.10
152069--152151	17	4.9	17	75	5	78	49	4	2	43	1.37
152069--152151	34	2.4	34	83	0	94	49	4	2	43	1.37
165812--165854	13	3.5	12	78	15	52	69	2	0	27	1.00
167193--167228	19	1.9	19	88	5	56	55	2	0	41	1.14
176842--176872	16	1.9	16	93	0	53	6	9	12	70	1.31
189532--189580	26	1.9	25	87	4	71	48	0	0	51	1.00
189567--189612	22	2.1	22	84	8	58	34	2	13	50	1.53
206168--206936	45	17.2	45	80	7	735	42	16	6	34	1.73
206180--206936	90	8.4	90	81	6	829	42	16	5	34	1.72
206328--206383	29	1.9	29	92	0	94	48	16	0	35	1.46
206328--206374	15	3.2	15	72	3	51	51	10	0	38	1.37
206376--206421	21	2.2	21	100	0	92	39	26	8	26	1.85
206180--206937	135	5.6	135	82	5	854	43	16	5	34	1.72
206686--206970	82	3.4	83	79	10	308	44	16	4	34	1.68
206893--207028	36	3.8	36	88	0	182	46	16	3	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207530--207891	28	12.6	28	75	9	266	50	11	15	22	1.76
208368--208405	3	12.7	3	88	0	58	63	2	0	34	1.09
209541--209580	21	1.9	21	100	0	80	27	25	5	42	1.75
211143--211358	108	2.0	108	92	1	362	27	20	15	36	1.93

Tables:   1

The End!