genome.fa.s12922.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012922.1 Kokia drynarioides strain JFW-HI SEQ_127938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87059

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6890--6926	18	2.1	18	89	0	56	24	27	0	48	1.51
8705--8741	19	2.0	18	94	5	65	43	10	5	40	1.63
9180--9235	20	3.0	20	76	10	64	48	0	7	44	1.30
15702--15738	18	2.1	18	89	0	56	29	5	10	54	1.57
16147--16171	13	1.9	13	100	0	50	44	0	0	56	0.99
20207--20256	18	2.8	18	87	3	75	46	0	4	50	1.20
24583--24892	31	10.0	31	78	5	263	41	7	17	33	1.77
27353--27435	38	2.2	38	100	0	166	33	13	21	31	1.92
38548--38601	18	3.1	17	80	12	65	42	1	3	51	1.30
38544--38595	17	3.0	17	78	15	70	42	1	5	50	1.37
38844--38930	43	2.0	43	100	0	174	35	4	27	32	1.77
47942--48068	63	2.0	63	100	0	254	48	9	9	33	1.68
49115--49147	15	2.1	16	88	11	50	39	0	0	60	0.97
50062--50112	24	2.1	24	88	0	75	21	9	11	56	1.63
50074--50124	24	2.1	24	85	0	66	21	13	13	50	1.76
53309--53396	28	3.2	26	76	17	95	20	18	12	48	1.80
53772--53956	89	2.1	89	80	5	203	45	10	16	27	1.79
54276--54300	13	1.9	13	100	0	50	24	0	24	52	1.48
55139--55186	15	3.3	15	77	16	64	27	0	10	62	1.27
60935--60977	22	2.0	22	81	9	52	41	4	4	48	1.44
64075--64113	21	1.9	21	89	5	62	48	0	2	48	1.15
64689--64722	12	2.9	12	91	4	52	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64725--64782	14	3.8	15	77	9	55	68	0	1	29	0.99
64978--65043	22	2.8	24	75	9	73	34	7	0	57	1.27
68396--68482	15	5.9	15	82	5	88	57	4	18	19	1.57
69091--69136	25	1.9	23	86	8	65	36	2	4	56	1.31
70223--70247	12	2.1	12	100	0	50	36	8	16	40	1.77
78078--78131	23	2.2	25	81	15	69	0	38	0	61	0.96
78078--78143	24	2.7	24	75	15	64	0	37	0	62	0.96
81032--81076	22	2.0	22	95	0	81	44	37	4	13	1.64
81584--81617	17	2.0	17	100	0	68	11	23	17	47	1.81

Tables:   1

The End!