Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012926.1 Kokia drynarioides strain JFW-HI SEQ_127942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3804
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Warning! 34 characters in sequence are not A, C, G, or T
Found at i:757 original size:216 final size:216
Alignment explanation
Indices: 1--3796 Score: 4016
Period size: 216 Copynumber: 17.7 Consensus size: 216
* * *
1 AAGTTCGACAAGTTC-GAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACAT-AATAAGT
1 AAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
64 TTTTAATTCAAAGTTCAAAACTTGTTTACAAAAAGAAAAACTATTTAGTCCAAATGTTACGATTT
65 TTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
*
129 CCCTCACATGGAATGTTC-AGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
130 CCCTCGCATGGAATGTTCGA-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
*
193 CGAATTTAAGAAAGAACTCGTAA
194 CGAATTTAAAAAAGAACTCGTAA
* *
216 AAGTTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGGGAGAAA-AATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * *
280 TTTAATTCAAAGGCCAAAACTTGTTTACTAAATGACAAAA-TTTTTAGACCAAATGATGCGACTT
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTT
** * * * * * * * * *
344 CCCGAGCTTGTAATGTTCGTAAAATTGCTCGAAGGATTGGATTGTCTTAAATACTTTAAGGAAGC
130 CCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
** * *
409 GAAGCTATAAAAGAAGTCGTAA
195 GAATTTAAAAAAGAACTCGTAA
* *
431 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACC-A-AGAG----AATTCTCACTTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
490 TTTAATTCAAAGATGAAAACTTGTTTACAAAATGGAAAACTATTTAGACCAAATGATGTGAATTC
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
* * * * * * * *
555 CTTCGTATGGAATGTTTGGAAAATTACTCGAAGGAATAGATCATCTTGAACACTTTAACGAACTG
131 CCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCG
620 AATTTAAAAAAGAACAT-GTAA
196 AATTTAAAAAAGAAC-TCGTAA
* * * *
641 AAGTTTGACAAGGTCAGAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
706 TTTAATTCAAACG-CCAAAACTTGTTTACTAAATGACAAACTTTTTAGACCAAATGGTGCGACTT
66 TTTAATTCAAA-GATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
** * * * * * * * *
770 CCCGAGCTTGTAATGTTCGTAAGATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAGC
130 CCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
*** * *
835 GAAGCGATAAAA-AAGTCGTAA
195 GAATTTAAAAAAGAACTCGTAA
* * *
856 AAGTTCGACAAGTTCAGAAGTTCGTTCAAGAACC-A-AGAG----AATTCTCACTTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** *
915 TTTAATTCAAAGA-CGAAAACTTGTTTACAAAATGAAAAACTATTTATTCCAAATGATGCGAATT
66 TTTAATTCAAAGATC-AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
* * * * *
979 CCCTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATAGATCATCTTGAACACTTTAAGGAACT
130 CCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
*
1044 GGATTTAAAAAAGAACAT-GTAA
195 GAATTTAAAAAAGAAC-TCGTAA
* * ** * * * *
1066 AAGTTTGRCAAGKTCRRAAGTTYGTCCAASAACCAAGAGAKAAACAATTCTCACRTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *** * * * * *
1131 TWTAATTCAAASRYCAATACTTGTTTACTAAATGACAAACTATTTAGACCAAATGGTGCGACTTC
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
** * * * * * * * *
1196 CCGAGCTTGTAATGTTCGTAAGATTGCTCGAAGGATTGGATCGTCTTGAATACTTTAAGGAAGCG
131 CCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCG
** * *
1261 AAGCTATAAAA-AAGTCGTAA
196 AATTTAAAAAAGAACTCGTAA
* * *
1281 AAGTTCGACAAGTTCAGAAGTTCGTTCAAGAACC-A-AGAG----AATTCTCACTTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
1340 TTTAATTCAAAGA-CGAAAACTTGTTTACAAAATGAAAAACTATTTATACCAAATTATGCGAATT
66 TTTAATTCAAAGATC-AAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG-ATT
* * *
1404 T-CCTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATGGATAGTCTTGAACACTTTAAGGAAC
129 TCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* *
1468 TTG-ATTTAAAAAAGAACTAGTAA
194 -CGAATTTAAAAAAGAACTCGTAA
* ** *
1491 AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGTAATTCTAACGTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
1556 TATAATTCAAAGATCAAAACATGTTTACAAAATTG-AAAACTATTTAGACTAAATGATGAGATTT
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAA-TGAAAAACTATTTAGACCAAATGATGCGATTT
* ** * *
1620 CCGTCGCATGGAATGTTCGAAAAATTACAAGAAGGAATGGATCGTCTTGAACACTTTAAGCATCC
130 CCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
1685 GAATTTAAAAAAGAACTCGTAA
195 GAATTTAAAAAAGAACTCGTAA
* ** * *
1707 AAGTTTGTCAAGTTTTGAAGTTCGTCCAACAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** * * * *
1772 TTTAATTCAATGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGTGACTTC
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
* * * * * *
1837 CCGAC-CATGAAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCCTGAATACTTTAAGGAACC
131 CC-TCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
* ** * * *
1901 AAAGCTATAAAAGATCTCATAA
195 GAATTTAAAAAAGAACTCGTAA
* * * *
1923 AAATTCT-ACAAGTT-TGAGATTTCGTCCAATAACCAAGAGA-AACACAATTCTCACGTAAATAA
1 AAGTT-TGACAAGTTCAGA-AGTTCGTCCAAGAACCAAGAGAGAA-ACAATTCTCACGTAAATAA
* *
1985 GTTTTTAACTCAAAGATCAAAACTTGTTTACGAAATGAAAAACTATTTAGACCAAATGATGCGAT
63 GTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGAT
* *
2050 TTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATCGTCCTGAACACTTTAAGGAA
128 TTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA
* *** * *
2115 CWRG-ATWYWAWAAAGAACTAGTAA
193 C-CGAATTTAAAAAAGAACTCGTAA
* * * ** *
2139 AAGTTTGACAATTTCGGAAGTTTGTCCAWKAACCAAGAGAGAAACAATTMTCACGTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*** * * * * * *
2204 TTTAATTCAAACSCCMAAACTTGTTTACAAAATGAMAAACCT-TTTAGAYCAAATTATRCGACTT
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTT
* * ** * * * * * * * * * *
2268 -CCTGAGCRTSTAAWGTTYGRAAAATTRCYCGAARGATTGGATCGCCTTGCATACTTTAAGGAAC
130 CCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
** *
2332 CGAAGCTATAAAAGAACTCGTAA
194 CGAATTTAAAAAAGAACTCGTAA
** * * *
2355 AAGTTCAACAAGTT-TGAAAGTTCGTCCAAGAACCAAGAGAGCAACAATTCTCAC-TTAATAAGT
1 AAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
2418 TTTTAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAACTATTTAGACCAAATGATGTGATT
65 TTTTAATTCAAAGATCAAAACTTGTTTAC-AAAATGAAAAACTATTTAGACCAAATGATGCGATT
* * *
2482 TCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATCATCCTGAACACTTTAAGGAAC
129 TCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* * * *
2547 TGGATTTTAAAAAGAACTAGTAA
194 CGAATTTAAAAAAGAACTCGTAA
* * * *
2570 AAGTTTGACAATTTC-GAAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACTTAAATAAGT
1 AAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * ** * *
2634 CTTTAATTCAAACG-CCAAAACTTGTTTACAAAATGACAAACCCTTTAGACCAAATTATGCGACT
65 TTTTAATTCAAA-GATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATT
* * * * * * * * *
2698 T-CCTGAGCATGTAATGTTCGGAGAATTACTCAAAGGATTGGATCGCCTTGCATACTTTAAGGAA
129 TCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA
* * *
2762 CCGAATCTATAAAAGAACTTGTAA
193 CCGAATTTAAAAAAGAACTCGTAA
** * * *
2786 AAGTTCAACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGGAACAATTCTTAC-TTAATAAGT
1 AAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
** * *
2849 TTTTAATTCAAAGATCAAAACAAGTTTACGAAAA-AAAAAACTATTTAGACCAAATGATGTGATT
65 TTTTAATTCAAAGATCAAAACTTGTTTAC-AAAATGAAAAACTATTTAGACCAAATGATGCGATT
* *
2913 TCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAACACTTTAAGGAAC
129 TCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* * * * *
2978 TGGATTTAGAAAAGAACTAGAAA
194 CGAATTTAAAAAAGAACTCGTAA
* ** *
3001 AAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAGTAATTGTCACGTAAATAA-TT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
3065 TTATAATTCAAAGATCAAAACATGTTTACAAAATTG-AAAACTATTTAGACCAAATGATGAGATT
66 TT-TAATTCAAAGATCAAAACTTGTTTACAAAA-TGAAAAACTATTTAGACCAAATGATGCGATT
* ** *
3129 TCCCTCGCATGGAATGTTCAAAAAATTACAAGAAGGAATGGATCGTCTTGAACACTTTAAGGATC
129 TCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
3194 CGAATTTAAAAAAGAACTCGTAA
194 CGAATTTAAAAAAGAACTCGTAA
* * * *
3217 AAGTTT-----G-TC--AAGTTTGTCCAACAACAAAGAGAGAAACAATTCTCACGAAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
3274 TTTAATTCAAACG-CCAAAACTTGTTTACAAAATGACAAACCT-TTTAGGCCAAATTATACGACT
66 TTTAATTCAAA-GATCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCGATT
* * * * * * * *
3337 T-CCTGCGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGGATCGCCTTGCATACGTTAAGGAA
129 TCCCT-CGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA
** *
3401 CCGAAGCTATAAAAGAACTCGTAA
193 CCGAATTTAAAAAAGAACTCGTAA
** * * *
3425 AAGTTCAACAAGTTC-GAAAGTTCGTCCAAGAACCAAGATAGGAACAATTCTCAC-TTAATAAGT
1 AAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
3488 TTTCAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAACTATTTAGACCAAATGATGTGATT
65 TTTTAATTCAAAGATCAAAACTTGTTTAC-AAAATGAAAAACTATTTAGACCAAATGATGCGATT
* * * *
3552 TCCCTCGCATGGAATGTTCGGAAAATTACTCGGAGGAATAGATCGTCCTGAACACTTTAAGGAAC
129 TCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* * * *
3617 TGGATTTTAAAAAGAACTAGTAA
194 CGAATTTAAAAAAGAACTCGTAA
* **
3640 AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAGTAATTCTCACGTAAATAAGTT
1 AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
3705 TATAATTCAAAAATCAAAACTTGTTTACAAAATTG-AAAACTATTTAGACCAAATGATGAGATTT
66 TTTAATTCAAAGATCAAAACTTGTTTACAAAA-TGAAAAACTATTTAGACCAAATGATGCGATTT
3769 CCCTCGCATGGAATGTTCGAAAAATTAC
130 CCCTCGCATGGAATGTTCGAAAAATTAC
3797 AAGAAGGA
Statistics
Matches: 2935, Mismatches: 555, Indels: 181
0.80 0.15 0.05
Matches are distributed among these distances:
207 5 0.00
208 156 0.05
209 270 0.09
210 239 0.08
211 6 0.00
212 11 0.00
213 11 0.00
214 29 0.01
215 788 0.27
216 1402 0.48
217 18 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (216 bp):
AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
TTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
CCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCG
AATTTAAAAAAGAACTCGTAA
Found at i:2577 original size:431 final size:430
Alignment explanation
Indices: 1--3794 Score: 3972
Period size: 425 Copynumber: 8.9 Consensus size: 430
* *
1 AAGTTCGACAAGTTC-GAAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACAT-AATAAGT
1 AAGTTCGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGT
** * * * *
64 TTTTAATTCAAAGTTCAAAACTTGTTTACAAAAAGAAAAACTATTTAGTCCAAATGTTACGATTT
65 TTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT
* *
129 CCCTCACATGGAATGTTCAGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
130 -CCTCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
* * * *
194 GAATTTAAGAAAGAACTCGTAAAAGTTTGACAAG-TTCAGAAGTTCGTCCAACAACCAAGGGAGA
194 GAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGA-AAGTTCGTCCAAGAACCAAGAGAGA
** *
258 AA-AATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACTAAATGACAAAA-T
258 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC-AAAAGA-AAAACT
* * ** * * * *
321 TTTTAGACCAAATGATGCGACTTCCCGAGCTTGTAATGTTCGTAAAATTGCTCGAAGGATTGGAT
321 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * * *
386 TGTCTTAAATACTTTAAGGAA-GCGAAGCTATAAAAGAAGTCGTAA
386 CGTCCTGAACACTTTAAGGAACG-GAAGCTATAAAAGAACTCGTAA
431 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACC-A-AGAG----AATTCTCACTTAAATAAGTT
1 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
** * * *
490 TTTAATTCAAAGATGAAAACTTGTTTACAAAATGGAAAACTATTTAGACCAAATGATGTGAATTC
66 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
* * * * * *
555 CTTCGTATGGAATGTTTGGAAAATTACTCGAAGGAATAGATCATCTTGAACACTTTAACGAACTG
131 C-TCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCG
* * * *
620 AATTTAAAAAAGAACAT-GTAAAAGTTTGACAAG-GTCAGAAGTTTGTCCAACAACCAAGAGAGA
195 AATTTAAAAAAGAAC-TCGTAAAAGTTTGACAAGTTTGA-AAGTTCGTCCAAGAACCAAGAGAGA
* * * *
683 AACAATTCTCACATAAATAAGTTTTTAATTCAAACG-CCAAAACTTGTTTACTAAATGACAAACT
258 AACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GATCAAAACTTGTTTAC-AAAAGAAAAACT
* * * ** * * * * *
747 TTTTAGACCAAATGGTGCGACTTCCCGAGCTTGTAATGTTCGTAAGATTGCTCGAAGGATTGGAT
321 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* * * *
812 CGTCTTGAATACTTTAAGGAA-GCGAAGCGATAAAA-AAGTCGTAA
386 CGTCCTGAACACTTTAAGGAACG-GAAGCTATAAAAGAACTCGTAA
*
856 AAGTTCGACAAGTTCAGAAGTTCGTTCAAGAACC-A-AGAG----AATTCTCACTTAAATAAGTT
1 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
* ** *
915 TTTAATTCAAAGACGAAAACTTGTTTACAAAATGAAAAACTATTTATTCCAAATGATGCGAATTC
66 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG-ATTT
* * * *
980 CCTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATAGATCATCTTGAACACTTTAAGGAACTG
130 CCTCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCG
* * * *** * * *
1045 GATTTAAAAAAGAACAT-GTAAAAGTTTGRCAAGKTCRRAAGTTYGTCCAASAACCAAGAGAKAA
195 AATTTAAAAAAGAAC-TCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAA
* * *** * * *
1109 ACAATTCTCACRTAAATAAGTTTWTAATTCAAASRYCAATACTTGTTTACTAAATGACAAACTAT
259 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC-AAAAGAAAAACTAT
* * ** * * * * *
1174 TTAGACCAAATGGTGCGACTTCCCGAGCTTGTAATGTTCGTAAGATTGCTCGAAGGATTGGATCG
323 TTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
* * *
1239 TCTTGAATACTTTAAGGAA-GCGAAGCTATAAAA-AAGTCGTAA
388 TCCTGAACACTTTAAGGAACG-GAAGCTATAAAAGAACTCGTAA
*
1281 AAGTTCGACAAGTTCAGAAGTTCGTTCAAGAACC-A-AGAG----AATTCTCACTTAAATAAGTT
1 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
* * *
1340 TTTAATTCAAAGACGAAAACTTGTTTACAAAATGAAAAACTATTTATACCAAATTATGCGAATTT
66 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG-ATTT
* * *
1405 CCTCGCATGGAATGTTTGGAAAATTACTCGAAGGAATGGATAGTCTTGAACACTTTAAGGAACTT
130 CCTCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC-C
* * *
1470 G-ATTTAAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
194 GAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAA
** * * *
1534 GTAATTCTAACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAATTG-AAAACTA
259 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAA--GAAAAACTA
* * * * **
1598 TTTAGACTAAATGATGAGATTTCCGTCGCATGGAATGTTCGAAAAATTACAAGAAGGAATGGATC
322 TTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
* * * * ** *
1663 GTCTTGAACACTTTAAGCATCCGAATTTAAAAAAGAACTCGTAA
387 GTCCTGAACACTTTAAGGAACGGAAGCTATAAAAGAACTCGTAA
* * ** * * *
1707 AAGTTTGTCAAGTTTTGAAGTTCGTCCAACAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
1 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
* * * * * *
1772 TTTAATTCAATGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATGTGACTTC
66 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
* * * * * *
1837 C-CGACCATGAAATGTTCGAAAAATTGCTCGAAGGATTGGATCGTCCTGAATACTTTAAGGAACC
131 CTCG--CATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
* ** * * * * * * *
1901 AAAGCTATAAAAGATCTCATAAAAATTCT-ACAAGTTTGAGATTTCGTCCAATAACCAAGAGA-A
194 GAATTTAAAAAAGAACTCGTAAAAGTT-TGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGA
* *
1964 ACACAATTCTCACGTAAATAAGTTTTTAACTCAAAGATCAAAACTTGTTTACGAAATGAAAAACT
258 A-ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC-AAAAGAAAAACT
* *
2029 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGAT
321 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT
* **** * *
2094 CGTCCTGAACACTTTAAGGAACWRGATWYWA-WAAAGAACTAGTAA
386 CGTCCTGAACACTTTAAGGAAC-GGAAGCTATAAAAGAACTCGTAA
* * * * ** * *
2139 AAGTTTGACAATTTCGGAAGTTTGTCCAWKAACCAAGAGAGAAACAATTMTCACGTAAATAAGTT
1 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
** * * * * * *
2204 TTTAATTCAAACSCCMAAACTTGTTTACAAAATGAMAAACCT-TTTAGAYCAAATTATRCGACTT
66 TTTAATTCAAAGACCAAAACTTGTTTACAAAATGA-AAAACTATTTAGACCAAATGATGCGATTT
* * ** * * * * * * * * * *
2268 CCTGAGCRTSTAAWGTTYGRAAAATTRCYCGAARGATTGGATCGCCTTGCATACTTTAAGGAACC
130 CCT-CGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACC
** * ** *
2333 GAAGCTATAAAAGAACTCGTAAAAGTTCAACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGCA
194 GAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAA
* *
2398 ACAATTCTCAC-TTAATAAGTTTTTAATTCAAAGATCAAAACATGTTTACGAAAAGAAAAACTAT
259 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC-AAAAGAAAAACTAT
* * * *
2462 TTAGACCAAATGATGTGATTTCCCTCGCATGGAATGTTCGAAAAATTACTCGAAGGAATAGATCA
323 TTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG
*** *
2527 TCCTGAACACTTTAAGGAACTGGATTTTA-AAAAGAACTAGTAA
388 TCCTGAACACTTTAAGGAAC-GGAAGCTATAAAAGAACTCGTAA
* * * *
2570 AAGTTTGACAATTTC-GAAAGTTTGTCCAACAACCAAGAGAGAAACAATTCTCACTTAAATAAGT
1 AAGTTCGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGT
* * ** * *
2634 CTTTAATTCAAACG-CCAAAACTTGTTTACAAAATGACAAACCCTTTAGACCAAATTATGCGACT
65 TTTTAATTCAAA-GACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATT
* * * * * * * *
2698 TCCTGAGCATGTAATGTTCGGAGAATTACTCAAAGGATTGGATCGCCTTGCATACTTTAAGGAAC
129 TCCT-CGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* * * ** * *
2763 CGAATCTATAAAAGAACTTGTAAAAGTTCAACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGG
193 CGAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGA
* * ** *
2828 AACAATTCTTAC-TTAATAAGTTTTTAATTCAAAGATCAAAACAAGTTTACGAAAAAAAAAACTA
258 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC-AAAAGAAAAACTA
*
2892 TTTAGACCAAATGATGTGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
322 TTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC
** * * *
2957 G-CCTTGAACACTTTAAGGAACTGG-ATTTAGAAAAGAACTAGAAA
387 GTCC-TGAACACTTTAAGGAAC-GGAAGCTATAAAAGAACTCGTAA
* * ** * *
3001 AAGTTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAGTAATTGTCACGTAAATAA-TT
1 AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
* * *
3065 TTATAATTCAAAGATCAAAACATGTTTACAAAATTG-AAAACTATTTAGACCAAATGATGAGATT
66 TT-TAATTCAAAGACCAAAACTTGTTTACAAAA-TGAAAAACTATTTAGACCAAATGATGCGATT
** ** *
3129 TCCCTCGCATGGAATGTTCAAAAAATTACAAGAAGGAATGGATCGTCTTGAACACTTTAAGGATC
129 T-CCTCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* * *
3194 CGAATTTAAAAAAGAACTCGTAAAAGTTTGTCAAG--T-----TT-GTCCAACAACAAAGAGAGA
193 CGAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGA
* * *
3251 AACAATTCTCACGAAAATAAGTTTTTAATTCAAACG-CCAAAACTTGTTTACAAAATGACAAACC
258 AACAATTCTCACGTAAATAAGTTTTTAATTCAAA-GATCAAAACTTGTTTACAAAA-GA-AAAAC
* * * * * * *
3315 T-TTTAGGCCAAATTATACGACTT-CCTGCGCATGTAATGTTCGGAAAATTGCTCGAAGGATTGG
320 TATTTAGACCAAATGATGCGATTTCCCT-CGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * * *
3378 ATCG-CCTTGCATACGTTAAGGAACCGAAGCTATAAAAGAACTCGTAA
384 ATCGTCC-TGAACACTTTAAGGAACGGAAGCTATAAAAGAACTCGTAA
* * *
3425 AAGTTCAACAAGTTC-GAAAGTTCGTCCAAGAACCAAGATAGGAACAATTCTCACTT-AATAAGT
1 AAGTTCGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGT
* * * *
3488 TTTCAATTCAAAGATCAAAACATGTTTACGAAAA-GAAAAACTATTTAGACCAAATGATGTGATT
65 TTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGAAAAACTATTTAGACCAAATGATGCGATT
* * *
3552 TCCCTCGCATGGAATGTTCGGAAAATTACTCGGAGGAATAGATCGTCCTGAACACTTTAAGGAAC
129 T-CCTCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAAC
* * * * * *
3617 TGGATTTTAAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
193 CGAATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGA
** * *
3682 AGTAATTCTCACGTAAATAAGTTTATAATTCAAAAATCAAAACTTGTTTACAAAATTG-AAAACT
258 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAA--GAAAAACT
*
3746 ATTTAGACCAAATGATGAGATTTCCCTCGCATGGAATGTTCGAAAAATT
321 ATTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATT
3795 ACAAGAAGGA
Statistics
Matches: 2938, Mismatches: 359, Indels: 133
0.86 0.10 0.04
Matches are distributed among these distances:
422 1 0.00
423 180 0.06
424 189 0.06
425 944 0.32
426 192 0.07
427 1 0.00
428 8 0.00
429 1 0.00
430 54 0.02
431 819 0.28
432 536 0.18
433 12 0.00
434 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.27
Consensus pattern (430 bp):
AAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACTTAAATAAGTT
TTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTC
CTCGCATGGAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGA
ATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAAC
AATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAAGAAAAACTATTTA
GACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCC
TGAACACTTTAAGGAACGGAAGCTATAAAAGAACTCGTAA
Done.