genome.fa.s12933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012933.1 Kokia drynarioides strain JFW-HI SEQ_127951, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24247

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299--1921	29	21.5	29	72	7	282	35	24	6	33	1.81
1267--1457	88	2.2	86	82	8	217	33	24	6	35	1.82
1324--1888	59	9.7	59	72	8	309	36	24	6	33	1.80
1501--1859	118	3.1	117	80	6	345	36	24	5	33	1.79
1412--1750	88	3.9	89	73	11	277	34	24	5	35	1.80
6120--6172	15	3.6	14	82	12	61	86	5	5	1	0.75
6580--6610	13	2.5	12	90	10	53	90	0	9	0	0.46
7125--7219	13	7.2	12	74	16	66	81	0	14	4	0.85
7122--7190	30	2.4	28	90	9	111	82	0	11	5	0.83
7122--7222	30	3.4	30	82	14	97	80	0	15	3	0.86
7182--7227	14	3.2	14	84	12	58	73	0	26	0	0.83
8133--8301	50	3.4	50	80	2	153	36	17	28	17	1.93
8182--8572	50	8.1	50	72	12	267	35	16	30	17	1.92
8182--8440	137	1.9	138	86	0	376	34	17	31	16	1.92
8307--8531	99	2.2	101	80	7	255	35	15	32	16	1.90
9501--9572	37	1.9	37	85	0	99	34	18	26	20	1.95
9109--9771	209	3.2	208	86	3	947	37	17	21	23	1.94
9712--9813	37	2.8	37	90	0	168	33	16	23	26	1.96
9295--10220	449	2.1	452	89	3	1402	36	17	21	23	1.94
9748--10431	209	3.3	209	87	3	990	36	17	21	24	1.94
9177--10429	658	1.9	659	88	2	1619	37	17	21	23	1.94
11529--11568	20	2.1	20	86	9	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12714--12808	30	3.1	29	77	7	84	37	22	4	35	1.73
12775--13281	29	17.5	29	71	12	238	35	24	5	34	1.78
12744--13016	88	3.1	87	79	8	250	35	24	4	35	1.77
12978--13245	87	3.1	84	80	10	276	38	25	4	31	1.77
18227--18319	29	3.2	29	64	18	75	35	4	27	32	1.77
17959--18449	235	2.1	235	86	3	684	35	5	27	31	1.80
18239--18330	29	3.1	29	63	14	71	31	4	27	36	1.76
17934--18453	59	8.8	59	83	4	622	35	5	27	31	1.80
18428--18495	29	2.4	29	80	11	79	32	4	35	27	1.77
18434--18603	30	5.7	29	70	14	98	40	3	24	31	1.72
18460--18626	59	2.8	57	80	8	183	41	4	23	30	1.74
18442--18640	30	6.8	29	69	13	90	39	4	25	31	1.76
19556--19606	3	17.0	3	95	0	93	33	1	0	64	1.05
20909--21249	158	2.2	158	88	4	501	22	20	20	36	1.96
22020--22346	50	6.5	49	69	18	208	14	23	19	42	1.88
22109--22354	101	2.4	99	85	9	361	14	24	20	41	1.89
22021--22295	150	1.8	149	85	6	385	14	22	19	43	1.87

Tables:   1

The End!