Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012936.1 Kokia drynarioides strain JFW-HI SEQ_127954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4317
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33


Found at i:4198 original size:17 final size:18

Alignment explanation


    Indices: 4166--4199  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       4156 AATTTCTATC

                              
       4166 CAATTTATACCCTAATTT
          1 CAATTTATACCCTAATTT

                     *       
       4184 CAATTTA-ATCCTAATT
          1 CAATTTATACCCTAATT

       4200 AACTTATTTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    8  0.53
  18    7  0.47

ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44


Consensus pattern (18 bp):   
CAATTTATACCCTAATTT
Done.