genome.fa.s12937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012937.1 Kokia drynarioides strain JFW-HI SEQ_127955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165420

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8462--8487	12	2.2	12	100	0	52	46	0	46	7	1.31
20711--20742	16	2.0	16	93	0	55	25	15	0	59	1.36
24084--24161	37	2.1	37	90	4	122	26	26	19	26	1.99
25124--25154	16	1.9	16	93	0	53	22	16	0	61	1.34
33216--33320	47	2.2	47	89	1	156	53	6	11	28	1.62
33228--33321	24	4.0	24	88	2	145	56	5	9	28	1.53
35251--35333	24	3.5	24	88	0	103	48	10	13	27	1.75
36429--36467	18	2.2	17	86	4	51	38	0	5	56	1.22
41041--41117	17	4.6	17	85	3	111	42	1	1	54	1.16
41041--41122	6	14.3	6	70	19	59	43	1	1	53	1.16
41087--41132	23	2.0	23	83	8	58	43	2	0	54	1.12
42954--43184	29	7.9	29	73	6	144	36	27	3	32	1.74
42971--43176	58	3.5	55	77	10	178	36	27	3	32	1.74
42954--43257	29	10.4	29	70	11	138	35	27	3	32	1.75
42954--43201	87	2.8	87	75	4	239	37	27	3	32	1.74
53201--53575	205	1.8	201	86	2	543	37	20	21	20	1.95
53197--53637	205	2.2	201	83	2	542	36	20	22	21	1.95
53953--54017	6	11.3	6	71	21	50	44	1	1	52	1.19
53953--54014	17	3.6	17	82	6	81	43	1	1	53	1.20
55835--56089	30	8.7	29	77	8	250	36	27	2	34	1.71
55835--56089	59	4.4	58	83	3	253	36	27	2	34	1.71
55835--56052	89	2.5	88	86	3	285	37	26	2	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55958--56122	57	2.9	54	81	11	168	34	28	3	33	1.75
56412--56593	96	1.9	96	83	6	235	32	19	11	35	1.88
63397--63422	2	13.0	2	100	0	52	50	0	0	50	1.00
65004--65135	68	1.9	68	93	3	230	32	22	4	40	1.74
69952--69978	9	3.0	9	100	0	54	11	0	0	88	0.50
70017--70071	5	9.8	5	81	18	56	21	5	0	72	1.04
71023--71052	12	2.4	13	94	5	53	76	0	10	13	1.01
71622--71652	13	2.4	13	94	0	53	29	3	16	51	1.59
83364--83401	17	2.2	17	86	9	51	21	10	7	60	1.54
84005--84031	2	13.5	2	100	0	54	51	0	0	48	1.00
86489--86547	18	3.1	19	72	20	52	32	3	3	61	1.29
103524--103553	12	2.5	12	94	0	51	13	23	40	23	1.90
112855--113009	83	1.9	83	97	0	292	44	3	9	42	1.54
112986--113038	16	3.4	16	75	15	65	62	3	5	28	1.35
112979--113040	31	2.0	31	100	0	124	64	3	6	25	1.33
116912--116940	14	2.1	14	100	0	58	24	13	20	41	1.89
132735--132785	20	2.4	21	81	15	61	43	5	3	47	1.46
133406--133514	58	1.9	56	83	7	139	45	0	22	32	1.52
134346--134494	80	1.9	80	81	0	181	22	20	24	32	1.98
136698--136785	21	4.2	21	82	0	104	22	20	32	23	1.98
137757--137812	23	2.4	23	84	0	76	30	26	21	21	1.98
142711--142850	72	1.9	72	92	0	235	33	22	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157277--157595	159	2.0	159	96	1	586	31	15	17	34	1.92
163858--163957	51	2.0	51	82	4	121	22	20	13	45	1.85
163877--163929	17	3.1	17	83	0	61	20	18	11	49	1.78

Tables:   1

The End!