genome.fa.s12939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012939.1 Kokia drynarioides strain JFW-HI SEQ_127957, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  280555

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1360--1402	21	2.1	21	86	4	61	20	27	20	30	1.98
5308--5364	23	2.5	23	81	18	66	29	3	0	66	1.08
8919--8962	2	22.0	2	100	0	88	50	0	0	50	1.00
9300--9361	29	2.1	29	82	5	72	43	4	8	43	1.55
18823--19014	37	5.3	36	73	20	127	27	5	2	64	1.28
18911--18981	29	2.5	28	80	13	83	30	1	1	66	1.09
18859--19008	9	17.2	8	67	19	54	27	4	2	66	1.23
18961--19008	16	2.9	16	75	6	51	27	4	0	68	1.07
24218--24249	2	16.0	2	93	0	55	50	3	0	46	1.17
25358--25384	4	6.8	4	100	0	54	51	22	0	25	1.48
25611--25733	60	2.0	60	100	0	246	22	11	24	41	1.87
29598--29762	23	7.2	22	87	6	147	11	24	24	40	1.88
29610--29767	46	3.4	45	81	9	162	10	23	24	41	1.86
43118--43341	111	2.0	111	97	0	421	35	9	20	34	1.85
46451--46581	67	2.0	65	80	5	147	27	16	12	44	1.83
47094--47209	55	2.1	55	90	4	182	48	5	9	37	1.58
47383--47415	2	16.5	2	93	0	57	48	0	3	48	1.17
54718--54802	42	2.0	42	100	0	170	21	9	11	57	1.62
55689--55744	29	1.9	29	100	0	112	32	28	10	28	1.90
62501--62566	32	2.0	33	88	2	98	19	15	9	56	1.66
67032--67190	80	2.0	80	97	0	300	32	15	18	33	1.93
76698--76736	2	20.0	2	94	5	71	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77169--77214	24	1.9	24	81	0	56	43	21	2	32	1.65
86346--86387	3	14.0	3	100	0	84	33	0	0	66	0.92
101835--101882	24	2.0	24	95	0	87	47	20	14	16	1.82
102573--102616	11	3.6	12	82	14	54	72	2	0	25	0.96
102574--102644	33	2.2	32	82	10	81	67	2	1	28	1.13
107847--107885	19	2.1	19	95	0	69	43	5	5	46	1.48
108727--108759	16	2.0	17	88	5	50	45	0	0	54	0.99
115678--115732	21	2.4	22	82	14	58	63	0	0	36	0.95
120597--120653	21	2.6	22	80	8	71	50	3	0	45	1.18
123919--123965	22	2.1	23	84	4	60	14	0	36	48	1.44
130161--130205	11	4.4	11	78	13	51	57	2	2	37	1.23
130161--130235	20	3.7	20	78	10	82	57	4	2	36	1.32
130432--130469	19	1.9	21	89	10	62	34	0	2	63	1.09
138653--138745	38	2.5	37	81	8	93	62	0	1	36	1.03
146589--146728	51	2.7	51	80	4	140	39	10	19	31	1.84
150101--150132	13	2.6	13	90	9	50	62	0	9	28	1.26
154725--154832	54	2.0	54	94	0	189	37	20	9	32	1.84
157090--157126	16	2.3	17	86	9	51	43	5	0	51	1.24
164582--164631	17	2.8	18	82	11	59	74	2	0	24	0.93
164579--164631	18	3.1	17	79	12	56	73	1	0	24	0.93
165028--165065	14	2.7	14	87	0	58	21	18	5	55	1.62
165043--165099	27	2.1	28	86	3	80	26	17	3	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167562--167706	63	2.3	63	95	0	263	37	8	13	39	1.77
167957--168001	23	1.9	23	86	4	63	42	4	6	46	1.50
168188--168232	19	2.4	19	81	7	56	37	0	4	57	1.19
169095--169148	19	2.7	20	80	11	56	37	3	0	59	1.15
171165--171217	21	2.4	22	87	9	72	33	0	3	62	1.13
171165--171217	22	2.3	23	87	9	74	33	0	3	62	1.13
171238--171350	31	3.6	30	76	5	100	40	7	5	46	1.56
171294--171362	31	2.2	31	78	0	75	42	11	7	39	1.69
175645--175690	18	2.6	18	82	10	58	71	2	0	26	0.97
175642--175693	19	2.9	18	83	8	63	71	1	0	26	0.97
175642--175691	24	2.0	24	85	11	66	72	2	0	26	0.96
176262--176368	51	2.0	51	85	7	142	40	0	5	53	1.31
179971--180002	2	16.0	2	100	0	64	50	0	0	50	1.00
181118--181152	17	2.0	18	88	5	54	28	0	0	71	0.86
190793--190833	13	3.3	13	76	13	50	65	7	0	26	1.18
201354--201396	22	1.9	23	85	4	61	48	2	6	41	1.43
217070--217128	29	2.0	29	83	6	75	38	18	3	38	1.68
217868--217892	6	4.2	6	100	0	50	32	48	0	20	1.50
220642--220704	31	2.1	30	85	5	83	33	4	14	47	1.65
227394--227777	195	2.0	195	94	0	678	36	21	17	23	1.95
229675--229705	12	2.6	12	100	0	62	0	22	51	25	1.48
230647--230713	32	2.1	31	86	2	89	34	10	10	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234191--234225	19	1.9	17	88	11	52	68	0	8	22	1.16
235376--235407	13	2.5	13	89	0	55	34	6	6	53	1.51
236127--236197	17	4.2	17	74	0	52	47	4	5	42	1.46
237485--237530	23	2.0	23	87	4	67	56	15	0	28	1.39
243038--243219	101	1.8	101	85	2	258	31	17	18	33	1.93
243320--243653	50	6.7	50	73	11	200	16	25	17	39	1.91
243314--243495	100	1.8	101	82	1	240	15	27	17	39	1.90
243314--243535	100	2.2	99	80	4	232	15	27	17	39	1.90
243471--243616	51	2.9	49	76	10	134	17	26	15	41	1.89
243471--243702	101	2.3	100	80	4	277	17	25	17	40	1.91
243332--243644	150	2.1	150	83	2	378	16	25	18	39	1.91
244894--244979	6	13.5	6	75	13	66	3	13	1	81	0.88
244894--244979	13	6.8	12	77	9	82	3	13	1	81	0.88
251049--251127	31	2.5	31	83	4	97	37	5	5	51	1.46
252063--252093	16	2.0	16	93	6	55	38	0	0	61	0.96
264482--264540	25	2.4	25	83	8	68	38	0	6	54	1.27
264813--264837	8	3.1	8	100	0	50	24	0	24	52	1.48
268199--268231	17	1.9	17	93	0	57	57	9	6	27	1.53

Tables:   1

The End!