genome.fa.s12949.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012949.1 Kokia drynarioides strain JFW-HI SEQ_127967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130852

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--39	2	16.5	2	100	0	66	51	0	0	48	1.00
186--223	18	2.2	18	86	9	53	28	0	5	65	1.14
518--603	44	2.0	44	95	0	154	23	11	19	45	1.83
1206--1231	2	13.0	2	100	0	52	0	50	0	50	1.00
1282--1318	18	2.1	18	94	0	65	10	18	18	51	1.75
7983--8035	25	2.1	25	100	0	106	50	16	11	20	1.76
9130--9244	60	1.9	60	83	3	151	31	6	19	42	1.77
20331--20357	5	5.4	5	100	0	54	81	0	18	0	0.69
21167--21267	48	2.2	46	83	3	121	33	21	12	31	1.91
24596--24629	16	2.2	15	89	5	50	35	0	2	61	1.11
34229--34274	23	2.0	23	83	8	58	65	4	8	21	1.38
39808--39841	16	2.1	16	88	0	50	23	14	20	41	1.89
43195--43332	40	3.5	40	79	9	147	21	18	22	37	1.94
43242--43301	17	3.2	17	70	20	57	21	23	23	31	1.98
43155--43332	79	2.3	79	81	0	194	23	17	22	37	1.94
43196--43302	39	2.7	40	85	8	139	21	17	23	37	1.94
45362--45399	19	2.0	20	89	5	60	68	0	0	31	0.90
45720--45836	43	2.7	44	79	11	134	37	0	3	58	1.15
45728--45788	19	2.9	19	67	19	50	39	0	3	57	1.15
45709--45833	45	2.8	43	78	11	137	38	0	3	58	1.14
46120--46241	48	2.6	48	88	6	142	51	12	13	22	1.74
46145--46241	48	2.0	48	100	0	194	50	12	12	24	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66930--66979	24	2.1	24	92	0	82	56	12	12	20	1.67
68610--68648	18	2.2	18	90	0	60	64	2	0	33	1.08
71765--71858	47	2.0	47	93	0	161	41	29	11	17	1.84
71766--71840	24	3.2	24	63	24	59	44	29	9	17	1.80
76044--76085	21	2.0	21	100	0	84	28	14	14	42	1.84
80895--80946	24	2.1	24	82	13	61	42	7	0	50	1.31
83853--83953	44	2.3	43	83	8	116	26	21	19	31	1.98
84337--84368	3	10.7	3	93	0	55	28	0	3	68	1.04
87704--87740	19	2.0	19	89	5	58	35	0	8	56	1.29
93833--94067	24	9.8	24	84	0	263	36	15	26	21	1.93
93833--94049	72	3.0	72	87	1	292	36	15	26	21	1.93
95093--95272	70	2.6	70	87	2	245	30	13	22	32	1.93
95638--95853	73	3.0	73	94	0	378	39	8	12	39	1.72
97390--97564	24	7.4	24	71	13	96	18	26	18	36	1.94
97366--97670	50	6.3	50	74	11	229	20	24	16	39	1.92
100046--100087	2	21.0	2	100	0	84	50	0	0	50	1.00
102830--102876	24	1.9	25	86	4	69	38	4	6	51	1.47
109653--109692	12	3.2	12	83	16	55	67	0	0	32	0.91
120589--120646	10	5.7	10	88	10	73	63	0	0	36	0.94
120734--120829	10	9.6	10	75	8	79	62	3	0	34	1.11
120735--120829	20	4.8	19	78	12	93	62	3	0	34	1.11
120901--121044	9	15.4	9	67	15	53	28	2	4	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120900--121026	20	6.2	20	67	12	69	28	2	4	64	1.26
120902--121035	64	2.1	66	80	8	150	29	2	4	63	1.29
123803--123837	7	4.7	7	86	13	52	42	0	0	57	0.99
123803--123847	16	2.9	16	87	12	60	42	2	0	55	1.12
123811--123878	17	4.1	17	77	7	68	39	1	4	54	1.30
123863--123894	12	2.7	12	95	0	55	53	0	3	43	1.16
125475--125550	30	2.5	30	78	0	89	35	22	3	38	1.73
125542--125811	29	9.2	29	74	13	160	35	24	4	35	1.76
125563--125686	63	2.0	63	87	7	182	38	24	5	31	1.78
125591--125657	34	2.0	35	91	5	111	41	23	4	29	1.74
125499--125831	29	11.3	30	70	14	153	35	24	4	35	1.75
125542--125708	92	1.8	91	82	8	214	37	24	4	33	1.77
125625--125831	58	3.6	58	83	6	215	35	25	3	35	1.73
125625--125788	86	1.9	86	81	6	197	34	26	3	35	1.72
125673--125831	59	2.8	59	86	3	209	35	26	3	35	1.72
125678--125851	29	6.0	29	69	16	101	35	25	2	36	1.69
125673--125851	58	3.1	59	84	6	199	35	26	2	35	1.71
129035--129573	58	9.3	59	87	3	752	30	3	31	33	1.76
129028--129573	175	3.1	174	87	4	782	30	4	31	33	1.77
129035--129544	29	17.4	29	69	18	160	30	4	31	33	1.77
129092--129582	29	16.8	30	72	18	294	31	3	30	34	1.75

Tables:   1

The End!