Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012956.1 Kokia drynarioides strain JFW-HI SEQ_127974, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2896
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:2079 original size:22 final size:20

Alignment explanation


    Indices: 2054--2106  Score: 61
    Period size: 22  Copynumber: 2.5  Consensus size: 20

       2044 TTTACATTCT

                                  
       2054 TTTTCTTTTTCTGCTTTAATGG
          1 TTTTCTTTTT-TGCTTT-ATGG

                               * 
       2076 TTTTCTGTTTTTGCTTTATTG
          1 TTTTCT-TTTTTGCTTTATGG

                      
       2097 TTTTGCTTTT
          1 TTTT-CTTTT

       2107 AATTTTAGTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 5
        0.82            0.03        0.15

Matches are distributed among these distances:
  21   10  0.36
  22   14  0.50
  23    4  0.14

ACGTcount: A:0.06, C:0.11, G:0.13, T:0.70


Consensus pattern (20 bp):   
TTTTCTTTTTTGCTTTATGG
Done.