Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012960.1 Kokia drynarioides strain JFW-HI SEQ_127978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2204
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.26
Warning! 138 characters in sequence are not A, C, G, or T
Found at i:464 original size:216 final size:216
Alignment explanation
Indices: 1--640 Score: 928
Period size: 216 Copynumber: 3.0 Consensus size: 216
* * *
1 GACAAGCTATTTAGACCAAATGATGCGATTTCCC-ATGGATGGAATGTTCGAAAAATTGCTCTAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATGTTCGAAAAATTGCTCGAA
* * * *
65 AAAATGGATCTTGTT-ATATACTTTATGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTCGACA
65 AGAATGGATCTTGTTGA-ATACTTTAAGGAACTGAAGTTAAAAAATAACTAGTAAAAGTTTGACA
* *
129 AGTTCGAAAGTTCGTCCGAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTAATTTAA
129 AGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
193 AGACCAAAACTTGTTTGCAAAAT
194 AGACCAAAACTTGTTTACAAAAT
* * *
216 GACAAATTATTTAGACCAAATGGTGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA
* * * * ** * * *
281 GAATAGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGACAGG
66 GAATGGATCTTGTTGAATACTTTAAGGAACTGAAGTTAAAAAATAACTAGTAAAAGTTTGACAAG
* * * *
346 TTCGGAACTTTGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTCAAAG
131 TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
411 ACCAAAAATTGTTTACAAAAT
196 ACCAAAACTTGTTTACAAAAT
*
432 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA
* * *
497 GAATGGATCTTGTTGAAAACTTTAGGGAACTGAAGTTAAAAAATAACTCAG-AAAAGTTTAACAA
66 GAATGGATCTTGTTGAATACTTTAAGGAACTGAAGTTAAAAAATAACT-AGTAAAAGTTTGACAA
* *
561 TTTTGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
130 GTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
626 GACCAAAACTTGTTT
195 GACCAAAACTTGTTT
641 NNNNNNNNNN
Statistics
Matches: 371, Mismatches: 50, Indels: 7
0.87 0.12 0.02
Matches are distributed among these distances:
215 146 0.39
216 223 0.60
217 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAA
GAATGGATCTTGTTGAATACTTTAAGGAACTGAAGTTAAAAAATAACTAGTAAAAGTTTGACAAG
TTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
ACCAAAACTTGTTTACAAAAT
Found at i:1387 original size:216 final size:217
Alignment explanation
Indices: 779--2204 Score: 1782
Period size: 216 Copynumber: 6.6 Consensus size: 217
769 NNNNNNNNNN
* * *
779 TTGCAAAATGACAAACCATTTAGACCAAATGATACGATTT-CTCGAGCATGGAATGTTCGAAAAA
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGC-CGAGCATGGAATATTCGAAAAA
* * * * ** * *
843 TTGCTCG-AAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCA-TAA
65 TTGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACT-AGTAA
* * * *
906 AAGTTTTAAAATTTCGAAAGTTCGTCCAGGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-T
129 AAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
970 TTTAATTCAAAGACCAAAACTTGT
194 TTTAATTCAAAGACCAAAACTTGT
* * * * * *
994 TTGCAAAATGACAAACTAGTTAGGCCAAATGATACGATTTGTCGAGCGTGGAATATTTGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
* *
1059 TGCTCG-AAGGAACGGATCGTCTTGAATAATTTAAGG-TCCAAAGTTATAAAAGAACTAGTAAAA
66 TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
* * * * *
1122 GTTTGACAAGTTCGAAAGTTCATACAA-AGACAAAGAAAGAACCAATTCTCACCTAAATAAGTTT
131 GTTTGACAAGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
1186 TTAATTCAAAGAGCAAAAGTTGT
195 TTAATTCAAAGACCAAAACTTGT
* * * * *
1209 TTGCTAAATGACAAACTATTTAGACCAAATGATGCAATTTGCCGAGCATTGAAAATTCGGAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
* * *
1274 TGCT-GAAATGAATGGATCCTCTTGAATACTTTATGGATCCAAAGTTATAAAAGAACTAGTAAAA
66 TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
* *
1338 GTTTGAGAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTT
131 GTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
1403 TAATTCAACGACCAAAACTTGT
196 TAATTCAAAGACCAAAACTTGT
* * * * * *
1425 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCGAGCTTGAAAAATTTGGAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
* * * *
1490 TGCT-GAAATGAATAGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAACTAGCAAAA
66 TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
* * * * *
1554 GGTTGTCAGGTTC-AGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAACAAGTTT
131 GTTTGACAAGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
1618 TTAATTCAAAGAACAAAACTTGT
195 TTAATTCAAAGACCAAAACTTGT
* * * * * * * *
1641 TTACAAAATAACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
* * * * * * ** * * *
1706 TGCTCTAAA-AAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAA
66 TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
* *
1770 GTTCGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTT
131 GTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
1834 TAATTTAAAGACCAAAACTTGT
196 TAATTCAAAGACCAAAACTTGT
* * * * * * * *
1856 TTGCATATTGACAAATTATTTAAATCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
* * *
1921 TGCTCGAAA-GAATAGATCGTCTTGAATACTTTAAGGATCTAATGTTATAAAAGAACTAGTAAAA
66 TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
* * * *
1985 GTTTGATAGGTTCGAAACTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATTAGTTTT
131 GTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
2050 TAATTCAAAGACCAAAACTTGT
196 TAATTCAAAGACCAAAACTTGT
* * * *
2072 TTGCAAAATGACAAACTATTTAGGCCAAATGATTCGATTTGCCGAGAATGGAATATTTGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
* * * * * *
2137 TGCTCG-AAGGAACGGATCTTCTTGAATAATTTATGGATCCAAAGTTATAAAATAACTTGTAAAA
66 TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
2201 GTTT
131 GTTT
Statistics
Matches: 1037, Mismatches: 162, Indels: 23
0.85 0.13 0.02
Matches are distributed among these distances:
213 2 0.00
214 71 0.07
215 380 0.37
216 579 0.56
217 5 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (217 bp):
TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTGCCGAGCATGGAATATTCGAAAAAT
TGCTCGAAAGGAATGGATCGTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAA
GTTTGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
TAATTCAAAGACCAAAACTTGT
Found at i:2012 original size:647 final size:646
Alignment explanation
Indices: 779--2193 Score: 1770
Period size: 647 Copynumber: 2.2 Consensus size: 646
769 NNNNNNNNNN
* * * * ** *
779 TTGCAAAATGACAAACCATTTAGACCAAATGATACGATTT-CTCGAGCATGGAATGTTCGAAAAA
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTAC-CGAGAATGAAAAATTTGAAAAA
** * * * * * ** * *
843 TTGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACT--CATAA
65 TTGCTCGAAGGAACAGATCGTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACTAGCA-AA
* * * ** * * *
906 AAGTTTTAAAATTTC-GAAAGTTCGTCCAGGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
129 AGGTTGT-CAGGTTCAG-AAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAACAAGT
* * * * * *
970 TTTAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTAGTTAGGCCAAATGATACGATTTG
192 TTTAATTCAAAGAACAAAACTTGTTTACAAAATAACAAACTAGTTAGACCAAATGACACGATTTC
* * * ** *
1035 TCGAGCGTGGAATATTTGAAAAATTGCTCGAAGGAACGGATCGTCTTGAATAATTTAAGGTCCAA
257 CCAAGCGTGGAATATTCGAAAAATTGCTCGAAAAAACGGATCGTCTTGAATAATTTAAGGACCAA
* * *
1100 AGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATACAAAGACAAAGAAAGAACC
322 AGTTAAAAAAGAACTAGTAAAAGTTCGACAAGTTCGAAAGTTCATACAAAGACAAAGAAAGAAAC
* *
1165 AATTCTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTGCTAAATGACAAACTATTT
387 AATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCTAAATGACAAACTATTT
* * * ** *
1230 AGACCAAATGATGCAATTTGCCGAGCATTGAAAATTCGGAAAATTGCTGAAATGAATGGATCCTC
452 AAACCAAATGATGCAATTTCCCGAGCATGGAAAATTCAAAAAATTGCTGAAATGAATAGATCCTC
* *
1295 TTGAATACTTTATGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGAGAAGTTCGAAAGTTCG
517 TTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGAGAAGTTCGAAACTTCG
*
1360 TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTTTAATTCAACGACCAAAACTTGT
582 TCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTTTAATTCAAAGACCAAAACTTGT
** *
1425 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCGAGCTTGAAAAATTTGGAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCGAGAATGAAAAATTTGAAAAAT
* * * *
1490 TGCT-GAAATGAATAGATCGTCTTGAATACTTTAAGGTTCCAAAGTTATAAAAGAACTAGCAAAA
66 TGCTCG-AAGGAACAGATCGTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACTAGCAAAA
1554 GGTTGTCAGGTTCAGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAACAAGTTTT
130 GGTTGTCAGGTTCAGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAACAAG-TTT
* * *
1619 TAATTCAAAGAACAAAACTTGTTTACAAAATAACAAACTATTTAGACCAAGTGACGCGATTTCCC
194 TAATTCAAAGAACAAAACTTGTTTACAAAATAACAAACTAGTTAGACCAAATGACACGATTTCCC
* * * * * * * **
1684 AAG-GATGGAATGTTCGAAAAATTGCTCTAAAAAATGGATCTTGTTGAATACTTTAGGGAACTGA
259 AAGCG-TGGAATATTCGAAAAATTGCTCGAAAAAACGGATCGTCTTGAATAATTTAAGG-ACCAA
* * * *
1748 AGTTAAAAAATAACTCGTAAAAGTTCGACAAGTTCGAAAGTTCAT-CCAAGAACAAAGAGAGAAA
322 AGTTAAAAAAGAACTAGTAAAAGTTCGACAAGTTCGAAAGTTCATACAAAG-ACAAAGAAAGAAA
* * * *
1812 CAATTCTCACGT-AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGC-ATATTGACAAATTAT
386 CAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCTA-AATGACAAACTAT
* * **
1875 TTAAATCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAA-GAATAGATC
450 TTAAACCAAATGATGCAATTTCCCGAGCATGGAAAATTCAAAAAATTGCT-GAAATGAATAGATC
* * * * *
1939 GTCTTGAATACTTTAAGGATCTAATGTTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAACT
514 CTCTTGAATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGAGAAGTTCGAAACT
**
2004 TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACT
579 TCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTTTAATTCAAAGACCAAAACT
2069 TGT
644 TGT
* * * * *
2072 TTGCAAAATGACAAACTATTTAGGCCAAATGATTCGATTTGCCGAGAATGGAATATTTGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCGAGAATGAAAAATTTGAAAAAT
* * * *
2137 TGCTCGAAGGAACGGATCTTCTTGAATAATTTATGGATCCAAAGTTATAAAATAACT
66 TGCTCGAAGGAACAGATCGTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACT
2194 TGTAAAAGTT
Statistics
Matches: 657, Mismatches: 100, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
645 1 0.00
646 148 0.23
647 436 0.66
648 72 0.11
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (646 bp):
TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCGAGAATGAAAAATTTGAAAAAT
TGCTCGAAGGAACAGATCGTCTTGAATAATTTAAGGATCCAAAGTTATAAAAGAACTAGCAAAAG
GTTGTCAGGTTCAGAAGTTAGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAACAAGTTTTA
ATTCAAAGAACAAAACTTGTTTACAAAATAACAAACTAGTTAGACCAAATGACACGATTTCCCAA
GCGTGGAATATTCGAAAAATTGCTCGAAAAAACGGATCGTCTTGAATAATTTAAGGACCAAAGTT
AAAAAAGAACTAGTAAAAGTTCGACAAGTTCGAAAGTTCATACAAAGACAAAGAAAGAAACAATT
CTCACCTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCTAAATGACAAACTATTTAAAC
CAAATGATGCAATTTCCCGAGCATGGAAAATTCAAAAAATTGCTGAAATGAATAGATCCTCTTGA
ATACTTTAAGGATCCAAAGTTATAAAAGAACTAGTAAAAGTTTGAGAAGTTCGAAACTTCGTCCA
AGAACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTTTAATTCAAAGACCAAAACTTGT
Found at i:2033 original size:431 final size:431
Alignment explanation
Indices: 779--2204 Score: 1876
Period size: 431 Copynumber: 3.3 Consensus size: 431
769 NNNNNNNNNN
* * * *
779 TTGCAAAATGACAAACCATTTAGACCAAATGATACGATTTCTCGAGCATGGAATGTTCGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAAT
* * ** *
844 TGCTCGAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCATAAAAG
66 TGCTCGAAAGAATGGATCTTCTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAG
* * *
909 TTTTAAAATTTCGAAAGTTCGTCCAGGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTT
131 TTTGAAAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * **
973 AATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTAGTTAGGCCAAATGATACGATTTGTCG
196 AATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCG
* * ** *
1038 AGCGTGGAATATTTGAAAAATTGCTCGAAGGAACGGATCGTCTTGAATAATTTAAGGTCCAAAGT
261 AGCATGGAATATTTGAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGTCCAAAGT
* * * * * *
1103 TATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCATACAA-AGACAAAGAAAGAACCAA
326 TATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTCCAAGA-ACAAAGAGAGAAACAA
* * *
1167 TTCTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGT
390 TTCTCACGTAAATAAGTTTTTAATTCAAAGAACAAAACTTGT
* * * * * *
1209 TTGCTAAATGACAAACTATTTAGACCAAATGATGCAATTTGCCGAGCATTGAAAATTCGGAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAAT
* * * * * *
1274 TGCT-GAAATGAATGGATCCTCTTGAATACTTTATGGATCCAAAGTTATAAAAGAACTAGTAAAA
66 TGCTCGAAA-GAATGGATCTTCTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAA
* *
1338 GTTTGAGAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAAGAAGTTTT
130 GTTTGAAAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
*
1403 TAATTCAACGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACC
195 TAATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACC
* * * *
1468 GAGCTTGAAAAATTTGGAAAATTGCT-GAAATGAATAGATCGTCTTGAATACTTTAAGGTTCCAA
260 GAGCATGGAATATTTGAAAAATTGCTCGAAA-GAATAGATCGTCTTGAATACTTTAAGG-TCCAA
* * *
1532 AGTTATAAAAGAACTAGCAAAAGGTTG-TCAGGTTC-AGAAGTTAGTCCAAGAACAAAGAGAGAA
323 AGTTATAAAAGAACTAGTAAAAGTTTGAT-AGGTTCGA-AAGTTCGTCCAAGAACAAAGAGAGAA
*
1595 ACAATTCTCACGTAAACAAGTTTTTAATTCAAAGAACAAAACTTGT
386 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAACAAAACTTGT
* * * * * * *
1641 TTACAAAATAACAAACTATTTAGACCAAGTGACGCGATTTCCCAAGGATGGAATGTTCGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAAT
* * * **
1706 TGCTCTAAAAAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAG
66 TGCTCGAAAGAATGGATCTTCTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAG
* * *
1771 TTCGACAAGTTCGAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGT-AATAAGTTTTT
131 TTTGAAAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * * *
1835 AATTTAAAGACCAAAACTTGTTTGCATATTGACAAATTATTTAAATCAAATGATGCGATTTCCCG
196 AATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCG
* ** * *
1900 AGCATGGAATGTTCAAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGATCTAATG
261 AGCATGGAATATTTGAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGG-TCCAAAG
*
1965 TTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAACTTCGTCCAAGAACAAAGAGAGAAACAA
325 TTATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAA
* *
2030 TTCTCACGTAAATTAGTTTTTAATTCAAAGACCAAAACTTGT
390 TTCTCACGTAAATAAGTTTTTAATTCAAAGAACAAAACTTGT
* * * * *
2072 TTGCAAAATGACAAACTATTTAGGCCAAATGATTCGATTTGCCGAGAATGGAATATTTGAAAAAT
1 TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAAT
* * * * * * *
2137 TGCTCGAAGGAACGGATCTTCTTGAATAATTTATGGATCCAAAGTTATAAAATAACTTGTAAAAG
66 TGCTCGAAAGAATGGATCTTCTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAG
2202 TTT
131 TTT
Statistics
Matches: 855, Mismatches: 130, Indels: 21
0.85 0.13 0.02
Matches are distributed among these distances:
429 3 0.00
430 163 0.19
431 431 0.50
432 254 0.30
433 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (431 bp):
TTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAAT
TGCTCGAAAGAATGGATCTTCTTGAATACTTTAGGGAACCAAAGTTAAAAAATAACTCGTAAAAG
TTTGAAAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGCGATTTACCG
AGCATGGAATATTTGAAAAATTGCTCGAAAGAATAGATCGTCTTGAATACTTTAAGGTCCAAAGT
TATAAAAGAACTAGTAAAAGTTTGATAGGTTCGAAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTAATTCAAAGAACAAAACTTGT
Done.