Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012967.1 Kokia drynarioides strain JFW-HI SEQ_127985, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4596
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27


Found at i:2905 original size:12 final size:12

Alignment explanation


    Indices: 2888--2913  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       2878 TGGTCTTTCA

                        
       2888 TGACCCAAATGT
          1 TGACCCAAATGT

                        
       2900 TGACCCAAATGT
          1 TGACCCAAATGT

              
       2912 TG
          1 TG

       2914 GGGGAGGTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27


Consensus pattern (12 bp):   
TGACCCAAATGT
Done.