Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001297.1 Kokia drynarioides strain JFW-HI SEQ_112700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2909
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36


Found at i:958 original size:26 final size:30

Alignment explanation


    Indices: 928--989  Score: 87
    Period size: 26  Copynumber: 2.2  Consensus size: 30

        918 TAAGGTGATC

                                          
        928 ATATATAAAATT-TT-AATA-AATAAAAAT
          1 ATATATAAAATTATTAAATATAATAAAAAT

                                     *    
        955 -TATATAAAATTATTAAATATAATATAAAT
          1 ATATATAAAATTATTAAATATAATAAAAAT

                  
        984 ATATAT
          1 ATATAT

        990 TTTTAAAATT


Statistics
Matches: 30,  Mismatches: 1, Indels: 5
        0.83            0.03        0.14

Matches are distributed among these distances:
  26   11  0.37
  27    2  0.07
  28    4  0.13
  29    8  0.27
  30    5  0.17

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (30 bp):   
ATATATAAAATTATTAAATATAATAAAAAT
Done.