Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012972.1 Kokia drynarioides strain JFW-HI SEQ_127990, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17719
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.32
Warning! 183 characters in sequence are not A, C, G, or T
Found at i:5335 original size:35 final size:35
Alignment explanation
Indices: 5296--5368 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
5286 TATCATTCTC
*
5296 GTTAAGCCCTTAACAGAAATTGTTAATCAATAATT
1 GTTAAGCCCTTAACAGAAACTGTTAATCAATAATT
5331 GTTAAGCCCTTAACAGAAACTGTTAATCAATAATT
1 GTTAAGCCCTTAACAGAAACTGTTAATCAATAATT
5366 GTT
1 GTT
5369 TTGTCACCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (35 bp):
GTTAAGCCCTTAACAGAAACTGTTAATCAATAATT
Found at i:6964 original size:45 final size:45
Alignment explanation
Indices: 6915--7048 Score: 173
Period size: 45 Copynumber: 3.0 Consensus size: 45
6905 GGCAATAGTA
* * *
6915 GGCACACAAAGTGCTAAACAGAAGCACACACAGTGCTAAATAGAG
1 GGCACACAAAGTGCTGAACAGAAGCACAAACAGTGCTAAACAGAG
* * *
6960 GGCACACACAGTGCTGAACAGAGGCACAAATAGTGCTAAACAGAG
1 GGCACACAAAGTGCTGAACAGAAGCACAAACAGTGCTAAACAGAG
7005 GGCACACACAA-TGCTGAACAGAAGGCACGAAAC-GTGCTAAACAG
1 GGCACACA-AAGTGCTGAACAGAA-GCAC-AAACAGTGCTAAACAG
7049 TAGGTGCGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
45 58 0.75
46 16 0.21
47 3 0.04
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.10
Consensus pattern (45 bp):
GGCACACAAAGTGCTGAACAGAAGCACAAACAGTGCTAAACAGAG
Found at i:6968 original size:23 final size:22
Alignment explanation
Indices: 6914--7048 Score: 146
Period size: 23 Copynumber: 6.0 Consensus size: 22
6904 GGGCAATAGT
*
6914 AGGCACACAAAGTGCTAAACAG
1 AGGCACACACAGTGCTAAACAG
* *
6936 AAGCACACACAGTGCTAAATAG
1 AGGCACACACAGTGCTAAACAG
*
6958 AGGGCACACACAGTGCTGAACAG
1 A-GGCACACACAGTGCTAAACAG
* *
6981 AGGCACAAATAGTGCTAAACAG
1 AGGCACACACAGTGCTAAACAG
* *
7003 AGGGCACACACAATGCTGAACAG
1 A-GGCACACACAGTGCTAAACAG
*
7026 AAGGCACGAAAC-GTGCTAAACAG
1 -AGGCAC-ACACAGTGCTAAACAG
7049 TAGGTGCGCT
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
22 39 0.42
23 50 0.54
24 4 0.04
ACGTcount: A:0.42, C:0.23, G:0.24, T:0.10
Consensus pattern (22 bp):
AGGCACACACAGTGCTAAACAG
Found at i:7154 original size:24 final size:26
Alignment explanation
Indices: 7116--7163 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
7106 TCTACATGAG
7116 CATAATCTCTCATAT-TCATCATTTCT
1 CATAATCTCTCATATATCA-CATTTCT
7142 CATAAT-T-TCATATATCACATTT
1 CATAATCTCTCATATATCACATTT
7164 ACATTTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 11 0.52
25 4 0.19
26 6 0.29
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (26 bp):
CATAATCTCTCATATATCACATTTCT
Found at i:8061 original size:344 final size:343
Alignment explanation
Indices: 7446--8434 Score: 1455
Period size: 344 Copynumber: 2.9 Consensus size: 343
7436 CTAGACTCAG
* * *
7446 AACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTAAAGC
1 AACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGC
* *
7511 GTGCTTGGGCGAGAGTAGTACTAGGATGAGTGACCTCCTGGGAAGTCCTCGTGTTGCA--CC-CC
66 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCC
* * **
7573 ---------TCTTTTTGTATCATTTTATTTATCGTAAGTTTGAAATTTTGTGAAATAGTAAAGCT
131 TTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTACGAAATAGTAAAGCT
*
7629 TCATGGGATACATGGACATTATAAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTC
196 TCATGGGATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTC
* *
7694 CCGAGCATTATTTGAGTATATTTACAGTCAAATTCGAGGCACGAATGGGTTGAAAGGTAGCCTTT
261 CCGAGCATTATTTG-GTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTT
* *
7759 GTGTAAACAAATTGCGTAA
325 ATGTAAACAAATTGCGCAA
* *
7778 AACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATTAGAATTCCGCAGTTAAGC
1 AACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGC
** *
7843 GTGCTTGGGCGAGAGTAGTGTTAGGATGGGTGACCTATTGGGAAGTCCTCGTGTTGCACCCCTCC
66 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCC
* * *
7908 TTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAACTTTGCAATTTTCCAAAATAGTAAAGCT
131 TTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTACGAAATAGTAAAGCT
* *
7973 TCATGGGATACATGGACATTATTAGTGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTC
196 TCATGGGATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTC
* * *
8038 TCGAGCATTATTTAGGCATATTTACATTCAAATTCGAGGAACGAATGGGATGAAAGGTAGCCTTT
261 CCGAGCATTATTT-GGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTT
* * *
8103 ATGTAAATAGATTGCGCAG
325 ATGTAAACAAATTGCGCAA
* *
8122 ATCATAA-TGTGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAGG
1 AACATAATTG-GTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAG
*
8186 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTAGCACCTCTC
65 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACC-C-C
** * *
8251 TTTTTGTTTTTTTTTTCCTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTACGAAATAGT
128 ---TCCTTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTACGAAATAGT
* *
8316 AAAGCTTCATGGTATACATGGACATTATTAGCATGTTTTTATTTTATTTTTATCCGCGAAAATAC
190 AAAGCTTCATGGGATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATAC
8381 GTCTTCCCGAGCATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGG
255 GTCTTCCCGAGCATTATTT-GGTATATTTACATTCAAATTCGAGGCACGAATGG
8435 NNNNNNNNNN
Statistics
Matches: 586, Mismatches: 52, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
332 113 0.19
334 2 0.00
335 2 0.00
343 2 0.00
344 298 0.51
345 2 0.00
346 1 0.00
349 166 0.28
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (343 bp):
AACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGC
GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCC
TTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTACGAAATAGTAAAGCT
TCATGGGATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTC
CCGAGCATTATTTGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTA
TGTAAACAAATTGCGCAA
Found at i:9351 original size:348 final size:349
Alignment explanation
Indices: 8485--10907 Score: 3657
Period size: 348 Copynumber: 7.0 Consensus size: 349
8475 NNNNNNNNNN
*
8485 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGAAT
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* *
8550 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCAAAAATACGTCTTCCCGAGCATT
66 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
* *
8615 ATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGTCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
** * * *
8680 GATTATGCAAAACATAATTGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCT
196 GATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCT
* *
8745 GCAGCT-AAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGTGT
261 GCAG-TGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
*
8809 TGCATCCCACTTTTTGTTTTTCTTTT
325 TGCACCCCACTTTTTGTTTTT-TTTT
*
8835 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGAAT
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* * *
8900 ACATGGACATTATTAGCGTATTTTTATTTTATTTTTATCCGCAAAAATATATCTTCCCGAGCATT
66 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
** * *
8965 ATTTGGATATATTTGCATTCAAATTCAAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* * * *
9030 GATTGCGCAGAACATAATTGGTGCGATCATACCAGCACTAATGCACCAAATCCCATAAGAACTCT
196 GATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCT
* *
9095 ACAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCACTTGGGAAGTCCTCGTGTT
261 GCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTT
*
9160 GCACCCCCCTTTTTG-TTTTTTTT
326 GCACCCCACTTTTTGTTTTTTTTT
* *
9183 TCTTTCTATATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
*
9248 ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
66 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
* *
9313 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAATGTAGTCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* * * * *** *
9378 GA-TACACAAAACATAATTGGTACGATTATACCAGCACTAACGCATTGGATCCCATCAGAA-TTT
196 GATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCT
* * * *
9441 CGCAGTTAAACGTGCTTGGGCGAGAGTAGTACTAAGATAGGTGACCTCTTGGGAAGTCCTCGTGT
261 -GCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
9506 TGCACCCCACTTTTTGTTTTTGTTTT
325 TGCACCCCACTTTTTGTTTTT-TTTT
* *
9532 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTACGAAATAGTAAAGCTTCATGGAAT
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* * * *
9597 ACATGGACATTATTAGTGTGTTTTTATTTTATTTTTATCCGCAAAAATATATCTTCTCGAGCATT
66 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
* * *
9662 ATTTGGGTATATTTGCATTCAAATTCAAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* *
9727 GATTGCGCAAAATATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTAT
196 GATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCT
* * * *
9792 ACAGTGAAGAGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACTTATTGGGAAGTCCTCGTGTT
261 GCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTT
*
9857 GCACCCCTCTTTTTG--TTTTTTT
326 GCACCCCACTTTTTGTTTTTTTTT
* * *
9879 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGTGAAATAGTAGAGCTTCATGGGAT
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* * *
9944 ACATGGACATTATTAGCGCGTTTTTACTTTATTTTTATCCGCGAAAATTTGTCTTCCCGAGCATT
66 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
*
10009 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAATGTAGCCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* * * ** *
10074 GATTGCGCAGAACATTATAGGTACGATCATACCAGCACTAATGCACTGGATCCCATCAGAA-TTT
196 GATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCT
* * * *
10138 CGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCACCTGGGAAGTCCTCGTGT
261 -GCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGT
10203 TGCACCCCACTTTTTGTTTTTTTTT
325 TGCACCCCACTTTTTGTTTTTTTTT
* *
10228 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTT-CTG-AACAGTAAAGCTTCATGGGA
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGC-GAAATAGTAAAGCTTCATGGGA
* *
10291 TACATGGACATTATTAGCGTGTTTCTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCAT
65 TACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCAT
10356 TATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
130 TATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
* * *
10421 AGATTGCGCAAAACATAATGGGTGA-GATCATACCAGCAGTAATGCACCAGATCCCATCAGAACA
195 AGATTGCGCAAAACATAATTGGT-ACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACT
* * * * *
10485 CTACAGTGAAGCGTGCTTGGGCGAGAGCAGAACTAGGATGGGTGACCTCCTGGGAAGTCCTCATG
259 CTGCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTG
*
10550 TTGCACCCCTCTTTTTGTTTTTTTTT
324 TTGCACCCCACTTTTTGTTTTTTTTT
* * *
10576 TCTTTTTGTATTATTTTAATTATCGTAAGTTTGCAATTTTGCGAAATAGTGAAGCTTCATGGGAT
1 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* * **
10641 ACATGGACATTATTAACGTGTTTTTATTTTATTTTTATCTGCGAAAATACATCTTCCCGAG-ATT
66 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCA-T
*
10705 TATTTGGGCATATTTACATTCAAAGTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
130 TATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
* *
10770 AGA-TGTGCAGAAC---A----TA--ATCATACCAGCACTAATGCACCAGATCCCATCAGAACTC
195 AGATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTC
* * * *
10825 TGCAATTAAGCGAGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTC
260 TGCAGTGAAGCGTGC-TTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTG
10890 TTGCACCCCTA-TTTTTGT
324 TTGCACCCC-ACTTTTTGT
10908 CTCTTTATTT
Statistics
Matches: 1893, Mismatches: 163, Indels: 44
0.90 0.08 0.02
Matches are distributed among these distances:
339 48 0.03
340 61 0.03
341 1 0.00
345 1 0.00
346 4 0.00
347 429 0.23
348 521 0.28
349 387 0.20
350 439 0.23
351 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (349 bp):
TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
GATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCAGATCCCATCAGAACTCT
GCAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTT
GCACCCCACTTTTTGTTTTTTTTT
Found at i:9829 original size:697 final size:696
Alignment explanation
Indices: 8485--10907 Score: 3817
Period size: 697 Copynumber: 3.5 Consensus size: 696
8475 NNNNNNNNNN
* *
8485 TCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGAAT
1 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* *
8550 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCAAAAATACGTCTTCCCGAGCATT
66 ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATT
* *
8615 ATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGTCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* *
8680 GATTATGCAAAACATAATTGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCT
196 GATTACGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCT
*
8745 GCAGCTAAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
261 GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
*
8810 GCATCCCACTTTTTGTTTTTCTTTTTCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTT
326 GCACCCCACTTTTTGTTTTT-TTTTTCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTT
*
8875 GCGAAATAGTAAAGCTTCATGGAATACATGGACATTATTAGCGTATTTTTATTTTATTTTTATCC
390 -CGAAATAGTAAAGCTTCATGGAATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCC
*
8940 GCAAAAATATATCTTCCCGAGCATTATTTGGATATATTTGCATTCAAATTCAAGGCACGAATGGG
454 GCAAAAATATATCTTCCCGAGCATTATTTGGGTATATTTGCATTCAAATTCAAGGCACGAATGGG
* *
9005 ATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATTGGTGCGATCATACCAGCACTA
519 ATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATTGGTACGATCATACCAGCACTA
* * *
9070 ATGCACCAAATCCCATAAGAACTCTACAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
584 ATGCACCAGATCCCATCAGAACTATACAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
*
9135 TGACCACTTGGGAAGTCCTCGTGTTGCACCCCCCTTTTTGTTTTTTTT
649 TGACCACTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTTT
* * *
9183 TCTTTCTATATTATTTTATTTATTGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
1 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
*
9248 ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATATGTCTTCCCGAGCATT
66 ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATT
* *
9313 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAATGTAGTCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* * * **
9378 GA-TACACAAAACATAATTGGTACGATTATACCAGCACTAACGCATTGGATCCCATCAGAATT-T
196 GATTACGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCT
* * *
9441 CGCAGTTAAACGTGCTTGGGCGAGAGTAGTACTAAGATAGGTGACCTCTTGGGAAGTCCTCGTGT
261 -GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGTGT
9506 TGCACCCCACTTTTTGTTTTTGTTTTTCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTT
325 TGCACCCCACTTTTTGTTTTT-TTTTTCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTT
*
9571 TACGAAATAGTAAAGCTTCATGGAATACATGGACATTATTAGTGTGTTTTTATTTTATTTTTATC
389 T-CGAAATAGTAAAGCTTCATGGAATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATC
*
9636 CGCAAAAATATATCTTCTCGAGCATTATTTGGGTATATTTGCATTCAAATTCAAGGCACGAATGG
453 CGCAAAAATATATCTTCCCGAGCATTATTTGGGTATATTTGCATTCAAATTCAAGGCACGAATGG
*
9701 GATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAATATAATTGGTACGATCATACCAGCACT
518 GATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATTGGTACGATCATACCAGCACT
*
9766 AATGCACCAGATCCCATCAGAACTATACAGTGAAGAGTGCTTGGGCGAGAGTAGTACTAGGATGG
583 AATGCACCAGATCCCATCAGAACTATACAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGG
*
9831 GTGACTTA-TTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTG-TTTTTTT
648 GTGAC-CACTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTTT
* *
9879 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGTGAAATAGTAGAGCTTCATGGGAT
1 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* **
9944 ACATGGACATTATTAGCGCGTTTTTACTTTATTTTTATCCGCGAAAATTTGTCTTCCCGAGCATT
66 ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATT
*
10009 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAATGTAGCCTTTATGTAAATA
131 ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* * * * *
10074 GATTGCGCAGAACATTATAGGTACGATCATACCAGCACTAATGCACTGGATCCCATCAGAATT-T
196 GATTACGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCT
* * *
10138 CGCAGTTAAGCGTGCTTGGGTGAGAGTAGTACTAGGATGGGTGACCACCTGGGAAGTCCTCGTGT
261 -GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGTGT
*
10203 TGCACCCCACTTTTTGTTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTT
325 TGCACCCCACTTTTTGTTTTTTTTTTCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTT
* * *
10268 CTG-AACAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTTTCTATTTTATTTTTATCC
390 C-GAAATAGTAAAGCTTCATGGAATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCC
* ** * * *
10332 GCGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGG
454 GCAAAAATATATCTTCCCGAGCATTATTTGGGTATATTTGCATTCAAATTCAAGGCACGAATGGG
* *
10397 ATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATGGGTGA-GATCATACCAGCAGT
519 ATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATTGGT-ACGATCATACCAGCACT
* *
10461 AATGCACCAGATCCCATCAGAAC-ACTACAGTGAAGCGTGCTTGGGCGAGAGCAGAACTAGGATG
583 AATGCACCAGATCCCATCAGAACTA-TACAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
* * *
10525 GGTGACCTCCTGGGAAGTCCTCATGTTGCACCCCTCTTTTTGTTTTTTTTT
647 GGTGACCACTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTG-TTTTTTTT
* *
10576 TCTTTTTGTATTATTTTAATTATCGTAAGTTTGCAATTTTGCGAAATAGTGAAGCTTCATGGGAT
1 TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* * * *
10641 ACATGGACATTATTAACGTGTTTTTATTTTATTTTTATCTGCGAAAATACATCTTCCCGAG-ATT
66 ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCA-T
*
10705 TATTTGGGCATATTTACATTCAAAGTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
130 TATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
* * *
10770 AGATGT--GCAGAAC---A----TA--ATCATACCAGCACTAATGCACCAGATCCCATCAGAACT
195 AGAT-TACGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAATT
* * * *
10824 CTGCAATTAAGCGAGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGT
259 CTGCAGTTAAGCGTGC-TTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGT
*
10889 CTTGCACCCCTA-TTTTTGT
323 GTTGCACCCC-ACTTTTTGT
10908 CTCTTTATTT
Statistics
Matches: 1610, Mismatches: 101, Indels: 38
0.92 0.06 0.02
Matches are distributed among these distances:
687 47 0.03
688 62 0.04
689 3 0.00
693 1 0.00
694 1 0.00
695 271 0.17
696 250 0.16
697 784 0.49
698 191 0.12
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (696 bp):
TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
ACATGGACATTATTAGCGCGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATT
ATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
GATTACGCAAAACATAATTGGTACGATCATACCAGCACTAATGCACCGGATCCCATCAGAATTCT
GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAAGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
GCACCCCACTTTTTGTTTTTTTTTTCTTTTTGTATTATTTTATTTATTGTAAGTTTGCAATTTTC
GAAATAGTAAAGCTTCATGGAATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGC
AAAAATATATCTTCCCGAGCATTATTTGGGTATATTTGCATTCAAATTCAAGGCACGAATGGGAT
GAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATTGGTACGATCATACCAGCACTAAT
GCACCAGATCCCATCAGAACTATACAGTGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTG
ACCACTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTTT
Found at i:10592 original size:17 final size:17
Alignment explanation
Indices: 10559--10592 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10549 GTTGCACCCC
* *
10559 TCTTTTTGTTTTTTTTT
1 TCTTTTTGTATTATTTT
10576 TCTTTTTGTATTATTTT
1 TCTTTTTGTATTATTTT
10593 AATTATCGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.82
Consensus pattern (17 bp):
TCTTTTTGTATTATTTT
Found at i:11857 original size:934 final size:924
Alignment explanation
Indices: 9972--11832 Score: 2631
Period size: 934 Copynumber: 2.0 Consensus size: 924
9962 CGTTTTTACT
* **
9972 TTATTTTTATCCGCGAAAATTTGTCTTCCCGAGCATTATTTGGGCATATTTACATTCAAATTCGA
1 TTATTTTTATCCGCAAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCAAATTCGA
* * * *
10037 GGCACGAATGGGATGAAATGTAGCCTTTATGTAAATAGATTGCGCAGAACATTATAGGTACGATC
66 GGCACAAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATAGGTACGATC
* * * * *
10102 ATACCAGCACTAATGCACTGGATCCCATCAGAATTTCGCAGTTAAGCGTGCTTGGGTGAGAGTAG
131 ATACCAGCACTAATGCACCGGATCCCATCAAAATTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAG
*
10167 TACTAGGATGGGTGACCACCTGGGAAGTCCTCGTGTTGCACCCCACTTTTTGTTTTTTTTTTCTT
196 TACTAGGATAGGTGACCACCTGGGAAGTCCTCGTGTTGCACCCCACTTTTTG--------TTCTT
*
10232 TTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTCTGAACAGTAAAGCTTCATGGGATACATG
253 TTTGTATTATTTTATTTATCATAAGTTTGCAATTTTCTGAACAGTAAAGCTTCATGGGATACATG
*
10297 GACATTATTAGCGTGTTTCTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTG
318 GACATTATTAGCGTGTTTCTATTTTATTTTTATCCACGAAAATACGTCTTCCCGAGCATTATTTG
* * * *
10362 GGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTG
383 GGCATATTTACATTAAAATTCGAGCCACAAATGGGATGAAAGGTAGCCTATATGTAAATAGATTG
* *
10427 CGCAAAACATAATGGGTGAGATCATACCAGCAGTAATGCACCAGATCCCATCAGAACACTACAGT
448 CGCAAAACATAATGGGTGAGATCATACCAGCACTAATGCACCAGACCCCATCAGAACACTACAGT
* * *
10492 GAAGCGTGCTTGGGCGAGAGCAGAACTAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACC
513 GAAGCGAGCTTGGGAGAGAGCAGAACTAGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGCACC
*
10557 CCTCTTTTTGTTTTTTTTTTCTTTTTGTATTATTTTAATTATCGTAAGTTTGCAATTTTGCGAAA
578 CCTCTTTTTG------------TTATGTATTATTTT-ATTATCGTAAGTTTGCAATTTTGCGAAA
* * *
10622 TAGTGAAGCTTCATGGGATACATGGACATTATTAACGTGTTTTTATTTTATTTTTATCTGCGAAA
630 TAGTAAAGCTTCATGGGATACATGAACATTATTAACGTGTTTTTATTTTATTTTTATCCGCGAAA
* * * *
10687 ATACATCTTCCCGAGATTTATTTGGGCATATTTACATTCAAAGTCGAGGCACGAATGGGATGAAA
695 ATACACCTTCCCGAGATTTATTTGGGCATAATTACATTCAAAGTCAAGGCACAAATGGGATGAAA
* * *
10752 GGTAGCCTTTATGTAAATAGATGTGCAGAACATAATCATACCAGCACTAATGCACCAGATCCCAT
760 GGTAGCCTTTATGTAAATAGATGCGCAAAACATAATCATACCAGCACTAATGCACCAGATACCAT
* * *
10817 CAGAACTCTGCAATTAAGCGAGCTTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAG
825 CAGAACTCCGCAATTAAGCGAGCTTTGGGCGAGAGTACTACTAGGATGGGTGACCTCCTGGGAAG
*
10882 TCCTCGTCTTGCACCCCTATTTTTGTCTCTTTATT
890 TCCTCGTCTTGCACCCCTATTTTTGTCTCTTTATA
* * *
10917 TTATTTTTATCCGCAAAAATACGTCTTCCTGAGCATTATTTGGGTATATTTGCATTCAAATTCGA
1 TTATTTTTATCCGCAAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCAAATTCGA
* * * *
10982 GGCACAAATGGGATGAAAGGTAGTCTTTATGTAAATAGATTGTGCAAAACATAATTGGTGCGATC
66 GGCACAAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATAGGTACGATC
11047 ATACCAGCACTAATGCACCGGATCCCATCAAAATTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAG
131 ATACCAGCACTAATGCACCGGATCCCATCAAAATTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAG
* * * *
11112 TA-TTGAGATAGGTGACCTCCTGGGAAGTCCTCGTGTTGCATCCCTCTTTTTG-T-TTTTT-T-T
196 TACTAG-GATAGGTGACCACCTGGGAAGTCCTCGTGTTGCACCCCACTTTTTGTTCTTTTTGTAT
*
11172 TATTTTATTTATCATAAGTTTGCAATTTTGC-GAAATAGTAAAGCTTCATGGGATACATGGACAT
260 TATTTTATTTATCATAAGTTTGCAATTTT-CTG-AACAGTAAAGCTTCATGGGATACATGGACAT
* *
11236 TATTAGCGTGTTTTTATTTTATTTTTATTCACGAAAATACGTCTTCCCGAGCATTATTTGGGCAT
323 TATTAGCGTGTTTCTATTTTATTTTTATCCACGAAAATACGTCTTCCCGAGCATTATTTGGGCAT
*
11301 ATTTACATTAAAATTCGAGCCACAAATGGGATGAAAGGTAGCCTATATGTAAATAGATTGCGCAG
388 ATTTACATTAAAATTCGAGCCACAAATGGGATGAAAGGTAGCCTATATGTAAATAGATTGCGCAA
* * * *
11366 AACATAATGGGTGAGATCATACCAGTACTAATGCACCGGACCCCATTAGAACTCTGA-AGAT-AA
453 AACATAATGGGTGAGATCATACCAGCACTAATGCACCAGACCCCATCAGAACACT-ACAG-TGAA
* * *
11429 GCGAGCTTGGGAGGGAGTAGCACTAGGATGGGTGACCTCCTAGGAAGTCCTCGA-GTTGCACCCC
516 GCGAGCTTGGGAGAGAGCAGAACTAGGATGGGTGACCTCCTAGGAAGTCCTC-ATGTTGCACCCC
11493 TCTTTTTG-TAT-TATT-TTTT-TTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATG
580 TCTTTTTGTTATGTATTATTTTATTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATG
* *
11554 GGATACATGAACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGCCTTCCCGAG
645 GGATACATGAACATTATTAACGTGTTTTTATTTTATTTTTATCCGCGAAAATACACCTTCCCGAG
* *
11619 CA-TTATTTGGGCATAATTACATTCAAATTCAAGGCACAAATGGGATGAAATGTAGCCTTTATGT
710 -ATTTATTTGGGCATAATTACATTCAAAGTCAAGGCACAAATGGGATGAAAGGTAGCCTTTATGT
*
11683 AAATAGATTGCGCAAAACATAGTGGGTGCGATCATACCAGCACTAATGCACCGGATACCATCAGA
774 AAATAGA-TGCGCAAAACATA---------ATCATACCAGCACTAATGCACCAGATACCATCAGA
*
11748 ACTCCGCAGA-TAAGCGTGC-TTGGG-GAGAGTACTACTAGGATGGGTGACCTCCTGGGAAGTCC
829 ACTCCGCA-ATTAAGCGAGCTTTGGGCGAGAGTACTACTAGGATGGGTGACCTCCTGGGAAGTCC
* *
11810 TCGTGTTGCACCCCTCTTTTTGT
893 TCGTCTTGCACCCCTATTTTTGT
11833 TTTTCTTTTC
Statistics
Matches: 830, Mismatches: 68, Indels: 56
0.87 0.07 0.06
Matches are distributed among these distances:
917 165 0.20
918 12 0.01
919 4 0.00
920 4 0.00
921 2 0.00
925 57 0.07
926 5 0.01
927 48 0.06
928 1 0.00
933 30 0.04
934 271 0.33
935 8 0.01
936 1 0.00
944 2 0.00
945 220 0.27
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (924 bp):
TTATTTTTATCCGCAAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCAAATTCGA
GGCACAAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATAGGTACGATC
ATACCAGCACTAATGCACCGGATCCCATCAAAATTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAG
TACTAGGATAGGTGACCACCTGGGAAGTCCTCGTGTTGCACCCCACTTTTTGTTCTTTTTGTATT
ATTTTATTTATCATAAGTTTGCAATTTTCTGAACAGTAAAGCTTCATGGGATACATGGACATTAT
TAGCGTGTTTCTATTTTATTTTTATCCACGAAAATACGTCTTCCCGAGCATTATTTGGGCATATT
TACATTAAAATTCGAGCCACAAATGGGATGAAAGGTAGCCTATATGTAAATAGATTGCGCAAAAC
ATAATGGGTGAGATCATACCAGCACTAATGCACCAGACCCCATCAGAACACTACAGTGAAGCGAG
CTTGGGAGAGAGCAGAACTAGGATGGGTGACCTCCTAGGAAGTCCTCATGTTGCACCCCTCTTTT
TGTTATGTATTATTTTATTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGATAC
ATGAACATTATTAACGTGTTTTTATTTTATTTTTATCCGCGAAAATACACCTTCCCGAGATTTAT
TTGGGCATAATTACATTCAAAGTCAAGGCACAAATGGGATGAAAGGTAGCCTTTATGTAAATAGA
TGCGCAAAACATAATCATACCAGCACTAATGCACCAGATACCATCAGAACTCCGCAATTAAGCGA
GCTTTGGGCGAGAGTACTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTCTTGCACCCCTATT
TTTGTCTCTTTATA
Found at i:13232 original size:17 final size:17
Alignment explanation
Indices: 13198--13232 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
13188 TGTTGCACCC
* *
13198 TTCTTTTTGTTTTTTTT
1 TTCTTTTTGTATTATTT
13215 TTCTTTTTGTATTATTT
1 TTCTTTTTGTATTATTT
13232 T
1 T
13233 ATTTATCGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.83
Consensus pattern (17 bp):
TTCTTTTTGTATTATTT
Found at i:13919 original size:8 final size:8
Alignment explanation
Indices: 13901--13934 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
13891 TGCACCCTTC
13901 TTTTTATTT
1 TTTTTA-TT
13910 TTTTTATT
1 TTTTTATT
13918 TTTTTATT
1 TTTTTATT
*
13926 ATTTTATT
1 TTTTTATT
13934 T
1 T
13935 ATCGTAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 17 0.74
9 6 0.26
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTATT
Found at i:14058 original size:697 final size:691
Alignment explanation
Indices: 10911--17719 Score: 7898
Period size: 697 Copynumber: 9.9 Consensus size: 691
10901 TTTTTGTCTC
* * *
10911 TTTATTTTATTTTTATCCGCAAAAATACGTCTTCCTGAGCATTATTTGGGTATATTTGCATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
10976 ATTCGAGGCACAAATGGGATGAAAGGTAGTCTTTATGTAAATAGATTGTGCAAAACATAATTGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * *
11041 GCGATCATACCAGCACTAATGCACCGGATCCCATCAAAATTCCGCAGCTAAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
11106 GAGTAGTA-TTGAGATAGGTGACCTCCTGGGAAGTCCTCGTGTTGCATCCC-TCTTTTTG-----
196 GAGTAGTACTAG-GATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCA-CCCTTCTTTTTGTTTTT
*
11164 --TT-TTTT-T-TTATTTTATTTATCATAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGG
259 TTTTCTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGG
* *
11224 ATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATTCACGAAAATACGTCTTCCCGAGCA
324 ATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCA
* * * * *
11289 TTATTTGGGCATATTTACATTAAAATTCGAGCCACAAATGGGATGAAAGGTAGCCTATATGTAAA
389 TTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAA
* * * *
11354 TAGATTGCGCAGAACATAATGGGTGAGATCATACCAGTACTAATGCACCGGACCCCATTAGAACT
454 TAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
* * * * * * * *
11419 CTGAAGATAAGCGAGCTTGGG-AGGGAGTAGCACTAGGATGGGTGACCTCCTAGGAAGTCCTCGA
519 CCGCAGTTAAGCGTGCTTGGGCA-AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGT
*
11483 GTTGCA-CCC-C----------TCTTTTTGTATTATTTTTTTTATCGTAAGTTTGCAATTTTGCG
583 GTTGCACCCCTCTTTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCG
*
11536 AAATAGTAAAGCTTCATGGGATACATGAACATTATTAGCGTGTT
648 AAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* * *
11580 TTTATTTTATTTTTATCCGCGAAAATACGCCTTCCCGAGCATTATTTGGGCATAATTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
11645 ATTCAAGGCACAAATGGGATGAAATGTAGCCTTTATGTAAATAGATTGCGCAAAACATAGTGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* *
11710 GCGATCATACCAGCACTAATGCACCGGATACCATCAGAACTCCGCAGATAAGCGTGCTTGGG-GA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
11774 GAGTACTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTCT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGTTTTT-T
* * *
11839 TTTCCCTTTGTATTATTTTATTTTTCGTAAGTTTGCAATTTTGCGAAATAGTAAAGTTTCATGGG
260 TTT-CTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGG
* * * * *
11904 ATGCATGGAAATTATTAGCGTGTTTTTACTTTATTGTTATCCGCAAAAATACGTCTTCCCGAGCA
324 ATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCA
* * * *
11969 TTATTTAGGTATATTTACATTCAAATTCTAGGCACGAATGGGATGAAACGTAGCTTTTATGTAAA
389 TTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAA
* * * *
12034 CAGATTGCGCAGAACATAATGAGTGTGATCATACCAGCACTAATGCACCGGAACCCATCAGAACA
454 TAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC-
* * * * *
12099 T-TGCAGCTAAGCGTGCTTTGGCGAGGGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGT
518 TCCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGT
* * * * * * *
12163 GTTGCACCCTTCTTTTTGTTTTTTTTCTTTTCGTACTATTTTATTTATTGCAAGTTCGTAATTTT
583 GTTGCACCC--CTCTTT-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTT
** *
12228 GCGAAATAGTAAAGCTTCATACGATACATCGACATTATTAGCGTGTT
645 GCGAAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* * *
12275 TTTATTTTATTTTTATCCGCGAAAATACTTCTTCCCGAGCATTATTTGGGAATATTTACATACAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * *
12340 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGTGCAAAAAATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* *
12405 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCGTGCTTGGGTGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
12470 GACTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACTCC-TC------------
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCAC-CCTTCTTTTTGTTTTTT
* * * *
12522 --T-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTTCGAAATAGTAAAGTTTCGTGGGG
260 TTTCTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGA
* * *
12584 TATATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCAAAAATACGTCTTCTCGAGCAT
325 TACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCAT
* * * * *
12649 TATTTGGGCATATTTACATTCAAATTCAAGGCACGAATGGGATCAAAGGTAGCCTTTATTTAAAA
390 TATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
* * *
12714 AGATTGCGCA-ACACATAATGGGTGTGATAATACCAGCACTAATGCACCGGATCCCTTCAGAACT
455 AGATTGCGCAGA-ACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
* * * *
12778 ACGCAGTTAATCGTGCTTGTGCAAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTG
519 CCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
* * * *
12843 TTGCACTCTTCTTTTTATTTTTTTTCTTTTTGCATTATTTTATTTGTCGTAAGTTTGCAATTTTG
584 TTGCAC-C-CCTCTTT-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTG
* * * **
12908 CGAAATAGCAATGCTTCATAGGATACATGGACATTATTAAAGTGTT
646 CGAAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* *
12954 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATCCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
13019 ATTCGAGGCACGAATAGGATGAAAAGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATTGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * *
13084 GAGATCATTCCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGTGTGATTGGGCAA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
*
13149 GAGTAGTACTAGGATGGGTGACCTCCCT-GGAAGTCCTTGTGTTGCACCCTTCTTTTTGTTTTTT
196 GAGTAGTACTAGGATGGGTGACCT-CCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTG-TTTTT
*
13213 TTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTACAATTTTGCGAAATAGTAAAGCTTCATGG
259 TTTTC-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGG
* *
13278 GATACATGGACATTATTAGCGTGTTTTTATTTTGTTTTTTATCTGCGAAAATACGTCTTCCCGAG
323 GATACATGGACATTATTAGCGTGTTTTTATTTT-ATTTTTATCCGCGAAAATACGTCTTCCCGAG
* *
13343 CATTATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGAGATGAAAGGTAGCCTTTATGTA
387 CATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTA
* * **
13408 AATAGATTGCGCAGAATATAATGGATGCGATCATACCAGCACTAATGCACCGGATTTCATCAGAA
452 AATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * * * *
13473 CTCCGCATTTAAGTGTGCTTGGGCAAGAGTAGTACTAAGATGGGAGACCCCCTGGGAATTCCTCG
517 CTCCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
*************
13538 TGTTGCACCCCTCTTTTTTTTTTTCTTTTTGGTATTATTTTATTTANNNNNNNNNNNNNNNNNNN
582 TGTTGCACCCCTCTTTTTTTTTTTCTTTTT-GTATTATTTTATTTA------TCGTAAGTTTGCA
********************************
13603 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGACATTATTAGCGTGTT
640 ATTTTGCGAAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* *
13655 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCTA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
13720 ATTCGAGGCACGAATGGGATCAAAGGTAGCCTTTATTTAAAAAGATTGCGTAGCACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * *
13785 GCGATCATATCATCACTAATGCACCGGATCCCTTCAGAACTCCACAGTTAACCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
*
13850 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG-TGCACCCTTCTTTTTATTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGTTTTTTT
* * * *
13914 TAT-TTTTTTATTATTTTATTTATCGTAAGTTTGCAATTTTGGGAAATAGTAATGCTTCATAGGA
261 T-TCTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGA
* * *
13978 TACATGGACATTATTAACGTGGTTTTATTTTATTTTTATCCGTGAAAATACGTCTTCCCGAGCAT
325 TACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCAT
* *
14043 TATTTGGGTATATTTACATTCAAATTCGAGGCA-GAAATGGGATGAAAGGTAGCTTTTATGTAGA
390 TATTTGGGTATATTTACATTCAAATTCGAGGCACG-AATGGGATGAAAGGTAGCCTTTATGTAAA
* * * * * ** * *
14107 TAGATTGCGCAGAATATAATGGCTGGGGTCTTACCAGCACTAATGCACCGGATTTCATCAAAAGT
454 TAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
** * * * * *
14172 TTGTAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGATCTTCAT-GGAAGTTCTCGT
519 CCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGA-CCTCCTGGGAAGTCCTCGT
* * *
14236 GTTGCACCCCTCATTTTGTTTTTTTTTTATTTTTCTATTATTTTATTTATCGTAAGTTTGAAATT
583 GTTGCACCCCTC----T-TTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATT
* * *
14301 CTGCGAAATAGTAAAGCTTCAAGGGATACATGGACATTATTAGCCTGTT
643 TTGCGAAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
** * * *
14350 TTTATTTT-TTTTTATCTTCGAAAATACATCTTCTCGAGCATTATTT-GGTATACTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
14413 ATTCGAGGCACGAATGGGATCAAAGGTTGCCTTTATGTAAATAGATTGCCCAGAACATAATGAGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* *
14478 GCGATCATACCAACACTAATGCACCGGATCCCATCAGAACTCCGCAGTTTAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * * *
14543 GAGTAGTACTAGTATGGGTGACCTCCTTGGATGTCCTCATGTTGCACCCCTCTTTTTG---TTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGTTTTTTT
* *
14605 TT-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGTGAAATAGTAAAGCTTCATGAGAT
261 TTCTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
* * * *
14669 ACATAGACATTATTAGCATGTTTTTACTTTATTTTTATCTGCGAAAATACGTCTTCCCGAGCATT
326 ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATT
* * * * *
14734 ATTTGGGTATATTTACTTTCAAACTCGAGGCACAAATAGGATGAAAGGTAGTCTTTATGTAAATA
391 ATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
* *
14799 GATTGTGCAGAACATAATGGGTGCGACCATACCAGCACTAATGCACCGGATCCCATCAGAACTCC
456 GATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCC
*** * * * *
14864 GGTTTTAAGCGTGCTTGGGCGAGAGTTGTACCAGGATGGGTGACCTCCTGGGAAGTCCTCATGTT
521 GCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
* * *
14929 GCACCGCTCTTTTTGTTTTTTTTCTTTTTGTATTATTTTATTTATCGTATGTTTGCAATTTTTCG
586 GCACC-C-CTCTTT-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCG
* *
14994 AAATAGTAAAGATTCATGCGATACATGGACATTATTAGCGTGTT
648 AAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* * * *
15038 TTTCTTTTATTTTTATCCTCGAAAATACGTCTTCTCGAGCATTATTTGGGCATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
15103 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * **
15168 GTGATTATACCAGCACTAATGCACCGGATCCCATCAGAACTCTGCAGTTAAGAGTGCTTGGGTAA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * *
15233 GAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTTTTGCACCCCTCTTTTTGTTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGTTTTTTT
* * * * *
15298 TTCTTTTTGCATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGCAATGCTTAATAGGA
261 TTC-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGA
* * * * *
15363 TACATGGACATTATTAACGCGTTTTAATTTTATTTTTATCCGCGAAAATACGTCTTCTCGTGCAT
325 TACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCAT
*
15428 TATTTGGGCATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
390 TATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAAT
* * * *
15493 AGATTACGCAGAAC-T-ATGGGTACGATCATACCAGTACTAATGCACCGGACCCCATCAGAACTC
455 AGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTC
* ** * *
15556 TGCAGCAAAGCGTGCTTGGGCAAGAGTAGCACTAGGATGGGTGACCTCCTGGGAATTCCTCGTGT
520 CGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGT
**********************************************
15621 TGCACCCCTCTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
585 TGCACCCCTCTTTTTTT--TTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCG
*********************************** * *
15686 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGTGGT
648 AAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* *
15730 TTTATTTTATTTTTATCCGTGAAAATACGTCATCCCGAGCATTATTTGGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
15795 ATTCGAGGCAGGAATGGGATGAAAGGTAGCTTTTATGTAAATA-AGTTGCGCAGAATATAATGGC
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGA-TTGCGCAGAACATAATGGG
** ** * *
15859 TGAAATCATACCAGCACTAATGCACCGGATTTCATTAGAACTCCGCAGTTAAGCGTGCTTGGGCT
130 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * * * * *
15924 AGAGCAGTACAAGGATGGGTGATCTTCTAGGAGGTCCTCATGTTGCA-CCTCTCTTTTTGTTTTT
195 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCT-TCTTTTTG-TTTT
15988 TTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATG
258 TTTTTC-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATG
* * * *
16053 AGATACATGGACATTATTAGTGTGTTTTTATTTTATTTTTATTCGCAAAAATACGTCTTCCCGAG
322 GGATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAG
* * * *
16118 CATTATTTGGGTATACTTACATTCAAATTCAAGGCACGAATGGGATGAAATGTAGTCTTTATGTA
387 CATTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTA
* * * * **
16183 AGTAGATTGCGTAGAATATAATGGGTGTGATCATACCAGCACTAATGCACCGGATTTCATCAGAA
452 AATAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAA
* * * * * * * *
16248 CTCCGCAGATAAGCATGCTTGGGCTAGAGTAGTACTAGGATGGGTGATCTCATGAGAGGTCCTCA
517 CTCCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCG
* *
16313 TGTTGCACCTCTCTTTTTGTGTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGTAAT
582 TGTTGCACC-C-C-TCTT-T-TTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAAT
* *
16378 TTTGCGAAATAGTAAAGCTTCATGAGCTACATGGACATTATTAGCGTGTT
642 TTTGCGAAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* * * *
16428 TTTATTTTATTTTTATTCGTGAAAATACGTCTTCCCGAGCTTTA-TTGGGTATATTTACGTTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* *
16492 ATTCGAGGCACGAATGAGATGAAAGGTAGCCTTTGTGTAAATAGATTGCGCAGAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
** * ** * * *
16557 GTTATCATACCAGCACTAATGCACCAGATTGCATCAGAACTCCGCAATTAAGCATGCTTAGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * *
16622 GAGTAGTACTAGGATTGGTGACCTCTTGGAAAGTCTTCGTGTTGCACCCTTCTTTTTGTATTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGT-TTTTT
* * * *
16687 TTTCTACTTGTATTATTTTATTTATCGTAAGTCTGCAATTTTACAAAATAGTAAAGCTTCATGGG
260 TTTCT-TTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGG
* ** *
16752 ATACATGGACATTATTATCGTGTTTTTATTTTATTTTTATTTGCGAAAATACGTCTTCCCGGGCA
324 ATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCA
* * * * *
16817 TTATTTTGGTATATTTCCATTCCAATTCGAGGCACGAATGGGATGAAAGGGAGACTTTATGTAAA
389 TTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAA
* * ** * * * * *
16882 TAGATTGTGCAAAACATAATGGGTGTTATCAAATCAGCACTATTGCATCGAATCCCATCAGAACT
454 TAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
* * * * * * *
16947 CCGCTGGTAAGTGTTCTTGGGCAAAAGTAGTACTAAGATGGGTGACCTCCTGGAAAGTCCTCGTG
519 CCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG
* * **
17012 TTGCACCCCTTTTTTTGTTTTTTTTTTATTTTGTATTATTTTATTTATTATAAGTTTGCAATTTT
584 TTGCACCCC--TCTTT-TTTTTTTTCT-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTT
* *
17077 ACGAAATAGTAAAGCTTCAT-GGATACATCGACATTATTAGCGTGTT
645 GCGAAATAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
* * ***
17123 ATTATTTTATTTTTATCCGCGAAAATATGTCTTTGTGAGCATTATTTGGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * * * *
17188 ATTCGAGGCACGAATGGGATGAAAGATAGACTTTAAGTAAATACATTGCGCATAATATAATGGTT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * ** * *
17253 GCGATCATAACAGCACTAATGCATCAGATTTCATCAAAACTCCGAAGTTAAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
*
17318 GAGTAGTACTAGGATGGGTGACC-CCTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCC-TGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGTTTTTT
* *
17382 TTTCTTTTCGTACTATTTTATTTATCGTAAGTTTGAAATTTTGCG-AATAGTAAAGCTTCATGGG
260 TTTCTTTT-GTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGG
* * *
17446 ATACATGGACATTATTAGCATGTTATTA-TTTATTTTTATCTGCGAAAATACGTCTTCCCGAGCA
324 ATACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCA
* *
17510 TTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGATAGACTTTATGTAAA
389 TTATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAA
* * * * * * * ** * *
17575 TAGATTGCGCATAATATAATTGTTGCGATCATAACAACAGTAATGCACCGGATTTCATCAAAATT
454 TAGATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACT
* * *
17640 CCGAAGTTAAGAGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACC-CCTTGGGAAGTCCTCGT
519 CCGCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCC-TGGGAAGTCCTCGT
17704 GTTGCACCCCTCTTTT
583 GTTGCACCCCTCTTTT
Statistics
Matches: 5156, Mismatches: 875, Indels: 197
0.83 0.14 0.03
Matches are distributed among these distances:
667 3 0.00
668 50 0.01
669 178 0.03
676 2 0.00
678 7 0.00
679 600 0.12
680 284 0.06
681 4 0.00
683 1 0.00
687 2 0.00
688 92 0.02
689 40 0.01
690 471 0.09
691 18 0.00
692 230 0.04
693 673 0.13
694 111 0.02
695 695 0.13
696 380 0.07
697 881 0.17
698 144 0.03
699 9 0.00
700 23 0.00
701 243 0.05
702 15 0.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.35
Consensus pattern (691 bp):
TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTGTTTTTTT
TTCTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGAT
ACATGGACATTATTAGCGTGTTTTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATT
ATTTGGGTATATTTACATTCAAATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATA
GATTGCGCAGAACATAATGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCC
GCAGTTAAGCGTGCTTGGGCAAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTT
GCACCCCTCTTTTTTTTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAA
TAGTAAAGCTTCATGGGATACATGGACATTATTAGCGTGTT
Found at i:16008 original size:17 final size:17
Alignment explanation
Indices: 15975--16008 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15965 GTTGCACCTC
* *
15975 TCTTTTTGTTTTTTTTT
1 TCTTTTTGTATTATTTT
15992 TCTTTTTGTATTATTTT
1 TCTTTTTGTATTATTTT
16009 ATTTATCGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.82
Consensus pattern (17 bp):
TCTTTTTGTATTATTTT
Found at i:16357 original size:17 final size:17
Alignment explanation
Indices: 16324--16357 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16314 GTTGCACCTC
* *
16324 TCTTTTTGTGTTTTTTT
1 TCTTTTTGTATTATTTT
16341 TCTTTTTGTATTATTTT
1 TCTTTTTGTATTATTTT
16358 ATTTATCGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.09, T:0.79
Consensus pattern (17 bp):
TCTTTTTGTATTATTTT
Found at i:16627 original size:348 final size:348
Alignment explanation
Indices: 10911--17719 Score: 7952
Period size: 347 Copynumber: 19.7 Consensus size: 348
10901 TTTTTGTCTC
* * *
10911 TTTATTTTATTTTTATCCGCAAAAATACGTCTTCCTGAGCATTATTTGGGTATATTTGCATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
10976 ATTCGAGGCACAAATGGGATGAAAGGTAGTCTTTATGTAAATAGATTGTGCAAAACATAATTGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * *
11041 GCGATCATACCAGCACTAATGCACCGGATCCCATCAAAATTCCGCAGCTAAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * *
11106 GAGTAGTA-TTGAGATAGGTGACCTCCTGGGAAGTCCTCGTGTTGCATCCCTCTTTTTG------
196 GAGTAGTACTAG-GATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
* *
11164 --T-TTTTT-T-TTATTTTATTTATCATAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGG
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAG
11224 ATACATGGACATTATTAGCGTGTT
325 ATACATGGACATTATTAGCGTGTT
* * * *
11248 TTTATTTTATTTTTATTCACGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTAAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * *
11313 ATTCGAGCCACAAATGGGATGAAAGGTAGCCTATATGTAAATAGATTGCGCAGAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * * * * * * *
11378 GAGATCATACCAGTACTAATGCACCGGACCCCATTAGAACTCTGAAGATAAGCGAGCTTGGGAGG
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * *
11443 GAGTAGCACTAGGATGGGTGACCTCCTAGGAAGTCCTCGAGTTGCA-CCC-C-------------
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
* *
11493 -TCTTTTTGTATTATTTTTTTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGGGA
261 TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAGA
*
11557 TACATGAACATTATTAGCGTGTT
326 TACATGGACATTATTAGCGTGTT
* * *
11580 TTTATTTTATTTTTATCCGCGAAAATACGCCTTCCCGAGCATTATTTGGGCATAATTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
11645 ATTCAAGGCACAAATGGGATGAAATGTAGCCTTTATGTAAATAGATTGCGCAAAACATAGTGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* *
11710 GCGATCATACCAGCACTAATGCACCGGATACCATCAGAACTCCGCAGATAAGCGTGCTTGGG-GA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
*
11774 GAGTACTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTCT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTT-T
** * * *
11839 TTTCCCTTTGTATTATTTTATTTTTCGTAAGTTTGCAATTTTGCGAAATAGTAAAGTTTCATGGG
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAG
* *
11904 ATGCATGGAAATTATTAGCGTGTT
325 ATACATGGACATTATTAGCGTGTT
* * * *
11928 TTTACTTTATTGTTATCCGCAAAAATACGTCTTCCCGAGCATTATTTAGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
11993 ATTCTAGGCACGAATGGGATGAAACGTAGCTTTTATGTAAACAGATTGCGCAGAACATAATGAGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * *
12058 GTGATCATACCAGCACTAATGCACCGGAACCCATCAGAACAT-TGCAGCTAAGCGTGCTTTGGCG
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAAC-TCCGCAGTTAAGCGTGCTTGGGCG
* *
12122 AGGGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCTTCTTTTTG-TTTTT
195 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
* * * * * *
12186 TTTCTTTTCGTACTATTTTATTTATTGCAAGTTCGTAATTTTGCGAAATAGTAAAGCTTCAT-AC
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA-
*
12250 GATACATCGACATTATTAGCGTGTT
324 GATACATGGACATTATTAGCGTGTT
* * *
12275 TTTATTTTATTTTTATCCGCGAAAATACTTCTTCCCGAGCATTATTTGGGAATATTTACATACAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * *
12340 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGTGCAAAAAATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* *
12405 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCGTGCTTGGGTGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
12470 GACTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCA---CTC-------------
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
* * * * * *
12519 CTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTTCGAAATAGTAAAGTTTCGTGGGG
261 TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAGA
*
12584 TATATGGACATTATTAGCGTGTT
326 TACATGGACATTATTAGCGTGTT
* * *
12607 TTTATTTTATTTTTATCCGCAAAAATACGTCTTCTCGAGCATTATTTGGGCATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
12672 ATTCAAGGCACGAATGGGATCAAAGGTAGCCTTTATTTAAAAAGATTGCGCA-ACACATAATGGG
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGA-ACATAATGGG
* * * * * * *
12736 TGTGATAATACCAGCACTAATGCACCGGATCCCTTCAGAACTACGCAGTTAATCGTGCTTGTGCA
130 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * *
12801 AGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACTCTTCTTTTT-ATTTTT
195 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
* * * *
12865 TTTCTTTTTGCATTATTTTATTTGTCGTAAGTTTGCAATTTTGCGAAATAGCAATGCTTCAT-AG
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA-
**
12929 GATACATGGACATTATTAAAGTGTT
324 GATACATGGACATTATTAGCGTGTT
* *
12954 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATCCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
13019 ATTCGAGGCACGAATAGGATGAAAAGTAGCCTTTATGTAAATAGATTGCGCAAAACATAATTGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * *
13084 GAGATCATTCCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGTGTGATTGGGCAA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
13149 GAGTAGTACTAGGATGGGTGACCTCCCT-GGAAGTCCTTGTGTTGCACCCTTCTTTTTGTTTTTT
196 GAGTAGTACTAGGATGGGTGACCT-CCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTG-TTTTT
* *
13213 TTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTACAATTTTGCGAAATAGTAAAGCTTCATGG
259 TTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA
13278 GATACATGGACATTATTAGCGTGTT
324 GATACATGGACATTATTAGCGTGTT
* * *
13303 TTTATTTTGTTTTTTATCTGCGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCA
1 TTTATTTT-ATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCA
* * *
13368 AATTCGAGGCACGAATGAGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAATATAATGGA
65 AATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGG
** * * *
13433 TGCGATCATACCAGCACTAATGCACCGGATTTCATCAGAACTCCGCATTTAAGTGTGCTTGGGCA
130 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * *
13498 AGAGTAGTACTAAGATGGGAGACCCCCTGGGAATTCCTCGTGTTGCACCCCTC---TT-TTTTTT
195 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
**********************************
13559 TTTCTTTTTGGTATTATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
260 TTTCTTTTT-GTATTATTTTATTTA------TCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCT
***********
13624 NNNNNNNNNNTATGGACATTATTAGCGTGTT
318 TCATGAGATACATGGACATTATTAGCGTGTT
* *
13655 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGCATATTTACATTCTA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
13720 ATTCGAGGCACGAATGGGATCAAAGGTAGCCTTTATTTAAAAAGATTGCGTAGCACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * *
13785 GCGATCATATCATCACTAATGCACCGGATCCCTTCAGAACTCCACAGTTAACCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
13850 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTG-TGCACCCTTCTTTTTATTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
* *
13914 TAT-TTTTT-TATTATTTTATTTATCGTAAGTTTGCAATTTTGGGAAATAGTAATGCTTCAT-AG
261 T-TCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA-
* *
13976 GATACATGGACATTATTAACGTGGT
324 GATACATGGACATTATTAGCGTGTT
*
14001 TTTATTTTATTTTTATCCGTGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
14066 ATTCGAGGCA-GAAATGGGATGAAAGGTAGCTTTTATGTAGATAGATTGCGCAGAATATAATGGC
66 ATTCGAGGCACG-AATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGG
* * * ** * * ** *
14130 TGGGGTCTTACCAGCACTAATGCACCGGATTTCATCAAAAGTTTGTAGTTAAGCGTGCTTGGGCG
130 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * *
14195 AGAGTAGTACTAGGATGGGTGATCTTCAT-GGAAGTTCTCGTGTTGCACCCCTCATTTTGTTTTT
195 AGAGTAGTACTAGGATGGGTGA-CCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTG-TTTT
* * * * *
14259 TTTTTATTTTTCTATTATTTTATTTATCGTAAGTTTGAAATTCTGCGAAATAGTAAAGCTTCAAG
258 TTTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATG
* *
14324 GGATACATGGACATTATTAGCCTGTT
323 AGATACATGGACATTATTAGCGTGTT
** * * *
14350 TTTATTTT-TTTTTATCTTCGAAAATACATCTTCTCGAGCATTATTT-GGTATACTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
14413 ATTCGAGGCACGAATGGGATCAAAGGTTGCCTTTATGTAAATAGATTGCCCAGAACATAATGAGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* *
14478 GCGATCATACCAACACTAATGCACCGGATCCCATCAGAACTCCGCAGTTTAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * *
14543 GAGTAGTACTAGTATGGGTGACCTCCTTGGATGTCCTCATGTTGCACCCCTCTTTTTG----TTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
*
14604 TT-TTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGTGAAATAGTAAAGCTTCATGAGA
261 TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAGA
* *
14668 TACATAGACATTATTAGCATGTT
326 TACATGGACATTATTAGCGTGTT
* * *
14691 TTTACTTTATTTTTATCTGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACTTTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * *
14756 ACTCGAGGCACAAATAGGATGAAAGGTAGTCTTTATGTAAATAGATTGTGCAGAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* ***
14821 GCGACCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGGTTTTAAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * *
14886 GAGTTGTACCAGGATGGGTGACCTCCTGGGAAGTCCTCATGTTGCACCGCTCTTTTTG-TTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
* * * *
14950 TTCTTTTTGTATTATTTTATTTATCGTATGTTTGCAATTTTTCGAAATAGTAAAGATTCATGCGA
261 TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAGA
15015 TACATGGACATTATTAGCGTGTT
326 TACATGGACATTATTAGCGTGTT
* * * *
15038 TTTCTTTTATTTTTATCCTCGAAAATACGTCTTCTCGAGCATTATTTGGGCATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
15103 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * **
15168 GTGATTATACCAGCACTAATGCACCGGATCCCATCAGAACTCTGCAGTTAAGAGTGCTTGGGTAA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* *
15233 GAGTAGTATTAGGATGGGTGACCTCCTGGGAAGTCCTCGTTTTGCACCCCTCTTTTTGTTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
* * * *
15298 TTCTTTTTGCATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGCAATGCTTAAT-AGG
261 TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA-G
* *
15362 ATACATGGACATTATTAACGCGTT
325 ATACATGGACATTATTAGCGTGTT
* * * *
15386 TTAATTTTATTTTTATCCGCGAAAATACGTCTTCTCGTGCATTATTTGGGCATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
*
15451 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTACGCAGAAC-T-ATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * * ** *
15514 ACGATCATACCAGTACTAATGCACCGGACCCCATCAGAACTCTGCAGCAAAGCGTGCTTGGGCAA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * ****
15579 GAGTAGCACTAGGATGGGTGACCTCCTGGGAATTCCTCGTGTTGCACCCCTC-TTTT-TTTNNNN
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
*****************************************************************
15642 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
261 TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAGA
************** * *
15707 NNNNNNNNNNNNNNTAACGTGGT
326 TACATGGACATTATTAGCGTGTT
* *
15730 TTTATTTTATTTTTATCCGTGAAAATACGTCATCCCGAGCATTATTTGGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
15795 ATTCGAGGCAGGAATGGGATGAAAGGTAGCTTTTATGTAAATA-AGTTGCGCAGAATATAATGGC
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGA-TTGCGCAGAACATAATGGG
** ** * *
15859 TGAAATCATACCAGCACTAATGCACCGGATTTCATTAGAACTCCGCAGTTAAGCGTGCTTGGGCT
130 TGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCG
* * * * * * * *
15924 AGAGCAGTACAAGGATGGGTGATCTTCTAGGAGGTCCTCATGTTGCACCTCTCTTTTTGTTTTTT
195 AGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTG-TTTTT
15989 TTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA
259 TTTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGA
*
16054 GATACATGGACATTATTAGTGTGTT
324 GATACATGGACATTATTAGCGTGTT
* * *
16079 TTTATTTTATTTTTATTCGCAAAAATACGTCTTCCCGAGCATTATTTGGGTATACTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * * *
16144 ATTCAAGGCACGAATGGGATGAAATGTAGTCTTTATGTAAGTAGATTGCGTAGAATATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* ** * * *
16209 GTGATCATACCAGCACTAATGCACCGGATTTCATCAGAACTCCGCAGATAAGCATGCTTGGGCTA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * * * *
16274 GAGTAGTACTAGGATGGGTGATCTCATGAGAGGTCCTCATGTTGCACCTCTCTTTTTGTGTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGT-TTTTT
*
16339 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGTAATTTTGCGAAATAGTAAAGCTTCATGAG
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAG
*
16404 CTACATGGACATTATTAGCGTGTT
325 ATACATGGACATTATTAGCGTGTT
* * * *
16428 TTTATTTTATTTTTATTCGTGAAAATACGTCTTCCCGAGCTTTA-TTGGGTATATTTACGTTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* *
16492 ATTCGAGGCACGAATGAGATGAAAGGTAGCCTTTGTGTAAATAGATTGCGCAGAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
** * ** * * *
16557 GTTATCATACCAGCACTAATGCACCAGATTGCATCAGAACTCCGCAATTAAGCATGCTTAGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * * *
16622 GAGTAGTACTAGGATTGGTGACCTCTTGGAAAGTCTTCGTGTTGCACCCTTCTTTTTGTATTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGT-TTTTT
** * * * *
16687 TTTCTACTTGTATTATTTTATTTATCGTAAGTCTGCAATTTTACAAAATAGTAAAGCTTCATGGG
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAG
*
16752 ATACATGGACATTATTATCGTGTT
325 ATACATGGACATTATTAGCGTGTT
** * * * *
16776 TTTATTTTATTTTTATTTGCGAAAATACGTCTTCCCGGGCATTATTTTGGTATATTTCCATTCCA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * *
16841 ATTCGAGGCACGAATGGGATGAAAGGGAGACTTTATGTAAATAGATTGTGCAAAACATAATGGGT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
** * * * * * * * * * *
16906 GTTATCAAATCAGCACTATTGCATCGAATCCCATCAGAACTCCGCTGGTAAGTGTTCTTGGGCAA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
* * * *
16971 AAGTAGTACTAAGATGGGTGACCTCCTGGAAAGTCCTCGTGTTGCACCCCTTTTTTTGTTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
** *
17036 TT-TATTTTGTATTATTTTATTTATTATAAGTTTGCAATTTTACGAAATAGTAAAGCTTCATG-G
261 TTCT-TTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAG
*
17099 ATACATCGACATTATTAGCGTGTT
325 ATACATGGACATTATTAGCGTGTT
* * ***
17123 ATTATTTTATTTTTATCCGCGAAAATATGTCTTTGTGAGCATTATTTGGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * * * *
17188 ATTCGAGGCACGAATGGGATGAAAGATAGACTTTAAGTAAATACATTGCGCATAATATAATGGTT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * ** * *
17253 GCGATCATAACAGCACTAATGCATCAGATTTCATCAAAACTCCGAAGTTAAGCGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
17318 GAGTAGTACTAGGATGGGTGACC-CCTTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
196 GAGTAGTACTAGGATGGGTGACCTCC-TGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTT
* * * *
17382 TTTCTTTTCGTACTATTTTATTTATCGTAAGTTTGAAATTTTGCG-AATAGTAAAGCTTCATGGG
260 TTTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAG
*
17446 ATACATGGACATTATTAGCATGTT
325 ATACATGGACATTATTAGCGTGTT
* *
17470 ATTA-TTTATTTTTATCTGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
1 TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
* * * * * *
17534 ATTCGAGGCACGAATGGGATGAAAGATAGACTTTATGTAAATAGATTGCGCATAATATAATTGTT
66 ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
* * * ** * * * *
17599 GCGATCATAACAACAGTAATGCACCGGATTTCATCAAAATTCCGAAGTTAAGAGTGCTTGGGCGA
131 GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
17664 GAGTAGTACTAGGATGGGTGACC-CCTTGGGAAGTCCTCGTGTTGCACCCCTCTTTT
196 GAGTAGTACTAGGATGGGTGACCTCC-TGGGAAGTCCTCGTGTTGCACCCCTCTTTT
Statistics
Matches: 5481, Mismatches: 897, Indels: 179
0.84 0.14 0.03
Matches are distributed among these distances:
329 1 0.00
330 5 0.00
331 45 0.01
332 539 0.10
333 1 0.00
335 3 0.00
336 3 0.00
337 208 0.04
338 2 0.00
341 84 0.02
342 40 0.01
343 183 0.03
344 121 0.02
345 21 0.00
346 703 0.13
347 1393 0.25
348 870 0.16
349 775 0.14
350 223 0.04
351 203 0.04
352 42 0.01
353 2 0.00
354 13 0.00
355 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.35
Consensus pattern (348 bp):
TTTATTTTATTTTTATCCGCGAAAATACGTCTTCCCGAGCATTATTTGGGTATATTTACATTCAA
ATTCGAGGCACGAATGGGATGAAAGGTAGCCTTTATGTAAATAGATTGCGCAGAACATAATGGGT
GCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGA
GAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCTTTTTGTTTTTTT
TTCTTTTTGTATTATTTTATTTATCGTAAGTTTGCAATTTTGCGAAATAGTAAAGCTTCATGAGA
TACATGGACATTATTAGCGTGTT
Done.