Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012977.1 Kokia drynarioides strain JFW-HI SEQ_127995, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3127
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:2243 original size:6 final size:6

Alignment explanation


    Indices: 2232--2257  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

       2222 TTAACATAAC

                                          
       2232 AATTAA AATTAA AATTAA AATTAA AA
          1 AATTAA AATTAA AATTAA AATTAA AA

       2258 CACCAAACAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (6 bp):   
AATTAA

Done.