genome.fa.s12984.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012984.1 Kokia drynarioides strain JFW-HI SEQ_128002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112453

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5571--5701	65	2.0	65	98	0	253	35	18	12	33	1.89
10317--10477	59	2.8	56	81	8	173	42	1	2	54	1.22
10658--10703	16	2.9	16	90	0	74	30	23	4	41	1.74
10840--10970	59	2.2	58	77	10	131	41	4	0	52	1.27
11371--11488	56	2.1	58	85	3	159	16	11	27	44	1.81
11470--11562	27	3.7	25	78	18	113	18	0	32	49	1.48
11470--11584	48	2.4	48	97	0	212	20	0	30	49	1.49
11495--11619	22	5.5	21	81	12	142	24	0	27	48	1.52
12353--12402	25	2.0	25	92	0	82	58	2	24	16	1.49
17133--17370	37	6.4	36	83	5	271	15	20	31	32	1.93
17127--17370	111	2.2	111	85	5	316	14	20	31	32	1.93
18023--19149	405	2.8	399	94	1	1956	27	12	18	41	1.86
20755--20841	21	3.9	22	74	15	72	64	1	1	33	1.09
20795--20871	10	7.7	10	72	20	54	63	0	0	36	0.95
20761--20860	46	2.1	48	87	7	141	65	1	1	33	1.06
21005--21058	23	2.3	23	96	0	99	33	0	29	37	1.58
22484--22555	26	2.8	26	100	0	144	50	2	11	36	1.53
23122--23262	62	2.3	61	80	7	151	36	12	7	43	1.69
23122--23216	31	3.0	31	79	14	106	38	11	6	43	1.66
23139--23258	31	3.8	31	79	7	109	38	9	6	45	1.62
30979--31042	25	2.5	24	85	12	76	35	1	10	51	1.47
30994--31042	25	1.9	26	91	4	82	34	0	12	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31760--31809	21	2.4	21	81	18	61	20	2	2	76	0.99
32269--32300	16	2.0	16	93	0	55	78	3	0	18	0.89
32056--32614	189	3.0	188	87	5	801	46	11	9	33	1.71
32456--32493	20	1.9	20	100	0	76	76	7	0	15	1.01
32055--32611	190	3.0	192	86	6	807	46	11	9	32	1.71
33585--33617	13	2.6	13	90	4	50	54	0	0	45	0.99
34725--34770	22	2.1	22	84	8	58	15	4	4	76	1.11
36797--36842	24	1.9	25	86	8	69	26	4	4	65	1.30
37920--38019	50	2.0	50	98	0	191	24	12	23	41	1.88
40243--40269	13	2.1	13	100	0	54	44	0	7	48	1.31
40247--40307	26	2.4	26	83	8	72	50	3	6	39	1.45
40246--40307	13	4.8	13	80	7	63	50	3	6	40	1.44
43661--43717	24	2.4	24	85	2	80	56	1	0	42	1.10
46390--46671	29	9.6	29	72	14	141	39	4	23	32	1.76
46388--46732	59	5.8	59	80	7	279	38	4	23	32	1.76
46423--46735	59	5.3	59	81	5	330	38	5	23	31	1.77
46420--46722	30	10.2	29	75	12	217	39	4	22	32	1.76
48375--48452	17	4.5	17	79	3	84	57	3	3	34	1.35
48941--49273	49	6.8	49	68	9	205	17	24	18	40	1.91
48879--49273	98	4.0	98	84	1	488	17	23	18	41	1.91
57830--58082	49	5.2	49	67	18	143	16	21	20	41	1.90
57779--58077	98	3.1	98	89	1	440	15	21	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69920--69980	29	2.1	28	85	8	79	24	11	27	36	1.90
69973--70038	29	2.3	29	86	5	89	37	1	16	43	1.57
69992--70070	32	2.5	32	82	11	85	36	2	18	41	1.65
70003--70423	29	14.4	29	74	12	317	37	1	23	37	1.64
70006--70426	57	7.2	58	82	8	392	37	1	23	37	1.64
72161--72256	17	5.6	17	86	2	129	57	4	3	35	1.34
72161--72261	6	17.3	6	68	10	57	57	3	2	35	1.33
74241--74364	66	1.9	65	81	3	151	35	8	3	52	1.49
77458--77565	29	3.7	28	81	10	119	42	21	0	35	1.59
77454--77640	30	6.3	30	82	3	191	37	22	3	35	1.73
87378--87438	22	2.8	22	87	7	81	72	1	11	14	1.20
87404--87433	15	1.9	16	93	6	53	70	0	13	16	1.18
88836--89029	106	1.8	107	84	5	268	27	25	11	35	1.90
90981--91024	21	2.1	21	82	0	52	27	15	13	43	1.85
91302--91750	224	2.0	224	91	0	729	29	20	17	31	1.96
92788--92847	21	2.8	22	82	12	72	71	1	10	16	1.21
94451--94479	9	3.3	9	95	4	51	0	6	0	93	0.36
98019--98075	22	2.7	21	84	10	71	70	1	10	17	1.24
98039--98071	16	2.1	16	94	5	59	69	0	12	18	1.18
98871--98926	19	2.9	20	72	17	55	58	7	0	33	1.25
103456--103555	50	2.0	50	86	0	137	33	18	26	23	1.97
103693--103784	40	2.3	40	86	3	123	31	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103693--103804	40	2.8	40	83	2	109	33	22	19	25	1.97
104447--104520	3	24.7	3	94	0	121	29	1	2	66	1.14
105536--105643	30	3.6	30	79	2	110	38	22	3	35	1.72
105599--105685	30	2.9	30	77	0	84	35	20	8	35	1.82
107940--107996	4	14.2	4	84	0	78	49	24	3	22	1.66
108178--108256	25	3.0	25	65	13	61	53	6	5	35	1.48
111788--111846	31	1.9	31	92	0	100	37	11	22	28	1.89

Tables:   1

The End!