Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012985.1 Kokia drynarioides strain JFW-HI SEQ_128003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1727
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:211 original size:97 final size:96

Alignment explanation


    Indices: 105--292  Score: 229
    Period size: 97  Copynumber: 1.9  Consensus size: 96

         95 AAAACTTTTA

                                                        *                    
        105 AATCGAGGCAATATTAT-TTTAT-TTCGAGTTTCAAAAAT-TTGTGCATTAACTTACTAGGTGCA
          1 AATCGAGGCAATATT-TCTTTATCTTCGA--TTCAAAAATATTGCGCATTAACTTACTAGGTGCA

              **                     *         
        167 ATTTTTTCCTCAAATCGAAATAATCGAATACCCTT
         63 A-CCTTTCCTCAAATCGAAATAATCAAATACCCTT

                        *                  **           *                    
        202 AATCGAGGCAATGTTTCTTTATCTTCGATTCCGAAATATTGCGCCTTAACTTACTAGGTGCAACC
          1 AATCGAGGCAATATTTCTTTATCTTCGATTCAAAAATATTGCGCATTAACTTACTAGGTGCAACC

                *         *           
        267 TTTCTTCAAATCGAGATAATCAAATA
         66 TTTCCTCAAATCGAAATAATCAAATA

        293 TTCTTTTCGC


Statistics
Matches: 78,  Mismatches: 10, Indels: 7
        0.82            0.11        0.07

Matches are distributed among these distances:
  96   31  0.40
  97   42  0.54
  98    5  0.06

ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36


Consensus pattern (96 bp):   
AATCGAGGCAATATTTCTTTATCTTCGATTCAAAAATATTGCGCATTAACTTACTAGGTGCAACC
TTTCCTCAAATCGAAATAATCAAATACCCTT
Done.