genome.fa.s12988.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012988.1 Kokia drynarioides strain JFW-HI SEQ_128006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90252

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093--1147	29	1.9	28	88	3	83	1	18	0	80	0.81
1093--1163	7	9.7	7	78	14	72	4	15	0	80	0.86
1093--1179	15	5.7	15	76	12	79	3	12	2	81	0.91
5657--5713	30	1.9	30	89	7	89	40	7	17	35	1.77
5657--5723	30	2.2	30	84	5	82	41	5	14	37	1.71
8107--8293	51	3.6	51	84	5	225	29	22	14	33	1.94
9571--9685	39	2.9	39	76	5	124	9	58	2	29	1.43
10810--10844	17	2.1	17	88	0	52	68	2	2	25	1.17
11113--11742	216	2.9	216	88	2	944	33	10	23	33	1.89
11784--11834	13	3.7	13	75	14	57	52	0	0	47	1.00
11762--11829	29	2.4	28	90	7	109	48	0	0	51	1.00
11769--11832	29	2.2	30	97	2	121	46	0	0	53	1.00
13318--13343	11	2.4	11	100	0	52	92	0	7	0	0.39
13688--13730	20	2.2	20	87	8	61	58	0	0	41	0.98
26169--26237	31	2.2	31	82	7	86	50	13	5	30	1.64
30541--30834	52	5.6	52	87	5	364	28	24	14	31	1.95
30541--30831	105	2.8	104	85	5	365	28	25	15	31	1.95
33398--33448	23	2.2	23	82	6	59	27	9	13	49	1.74
33433--33502	23	3.0	23	82	2	95	41	15	12	30	1.85
33593--33640	12	4.0	12	83	5	53	47	16	14	20	1.82
34392--34448	28	2.0	28	100	0	114	24	0	24	50	1.49
35608--35647	15	2.7	15	88	11	57	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38113--38442	30	10.9	30	81	7	355	36	16	3	43	1.66
45636--46135	98	5.1	98	83	3	571	39	18	24	17	1.92
45622--46103	49	9.8	49	69	9	273	39	18	24	17	1.92
48194--48402	30	7.0	30	90	3	307	34	16	2	45	1.62
50272--50474	101	2.0	101	96	0	370	30	13	24	32	1.93
51045--51215	85	2.0	85	91	3	281	33	9	25	31	1.89
52367--52474	23	4.7	23	79	2	110	14	18	20	46	1.84
53373--53484	53	2.1	53	98	0	215	37	7	31	24	1.82
55508--55585	37	2.1	37	92	0	129	24	6	16	52	1.67
58382--58486	31	3.4	31	77	7	124	52	4	1	40	1.33
58379--58495	61	1.9	61	96	0	216	51	4	1	42	1.31
62124--62156	17	1.9	17	88	11	50	66	9	6	18	1.40
71857--72076	113	1.9	114	87	7	318	25	18	6	49	1.72
74226--74540	160	2.0	157	90	3	497	32	7	24	34	1.85
80268--80333	33	2.0	33	100	0	132	39	6	15	39	1.72
87371--87417	20	2.2	22	85	7	62	61	2	0	36	1.08
88984--89054	17	4.1	17	74	3	70	43	1	2	52	1.24
88983--89063	17	4.6	18	79	11	69	44	1	2	51	1.22
88983--89058	35	2.2	35	82	0	89	44	1	2	51	1.23
89035--89077	18	2.4	18	88	3	61	48	4	0	46	1.22

Tables:   1

The End!