Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012989.1 Kokia drynarioides strain JFW-HI SEQ_128007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5938
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:2999 original size:17 final size:18

Alignment explanation


    Indices: 2977--3017  Score: 52
    Period size: 17  Copynumber: 2.4  Consensus size: 18

       2967 TTAGTTTTCA

                               
       2977 TGCATTCTT-ATTGTGC-C
          1 TGCATTCTTAATTGT-CAC

                              
       2994 TGCATT-TTAATTGTCAC
          1 TGCATTCTTAATTGTCAC

                   
       3011 TGCATTC
          1 TGCATTC

       3018 CATTTAGTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 5
        0.81            0.00        0.19

Matches are distributed among these distances:
  16    3  0.14
  17   18  0.86

ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46


Consensus pattern (18 bp):   
TGCATTCTTAATTGTCAC
Done.