Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001299.1 Kokia drynarioides strain JFW-HI SEQ_112705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38


Found at i:570 original size:13 final size:13

Alignment explanation


    Indices: 552--578  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        542 GTGTCTACGC

                         
        552 AGTGACTCCTCTA
          1 AGTGACTCCTCTA

                         
        565 AGTGACTCCTCTA
          1 AGTGACTCCTCTA

             
        578 A
          1 A

        579 CTCCATCATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30


Consensus pattern (13 bp):   
AGTGACTCCTCTA
Done.