Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012992.1 Kokia drynarioides strain JFW-HI SEQ_128010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 444825
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Warning! 271 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:9650 original size:22 final size:21
Alignment explanation
Indices: 9587--9644 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
9577 CGAACTAAAT
9587 ATTGAATTTCAACTGAAAAAA
1 ATTGAATTTCAACTGAAAAAA
9608 ATTGAATTTCAACTGAAAAAA
1 ATTGAATTTCAACTGAAAAAA
9629 ATTGAATTTCAACTGA
1 ATTGAATTTCAACTGA
9645 TTAAAAATCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.31
Consensus pattern (21 bp):
ATTGAATTTCAACTGAAAAAA
Found at i:42693 original size:3 final size:3
Alignment explanation
Indices: 42685--42714 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
42675 GTCTGTTAAT
*
42685 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
42715 ATACACTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:54250 original size:12 final size:12
Alignment explanation
Indices: 54233--54357 Score: 57
Period size: 12 Copynumber: 10.8 Consensus size: 12
54223 ATAACATCCA
54233 AACAACAAAAAT
1 AACAACAAAAAT
* *
54245 AACAACCAAAAC
1 AACAACAAAAAT
*
54257 AGA-AGCAAAAAT
1 A-ACAACAAAAAT
** *
54269 AAC-AGTAAAAC
1 AACAACAAAAAT
** *
54280 AACATTAAAAAC
1 AACAACAAAAAT
54292 AAC-A--AAAAT
1 AACAACAAAAAT
* *
54301 AGC-ACAAAAAC
1 AACAACAAAAAT
*
54312 AGCAACAAAAAT
1 AACAACAAAAAT
54324 AACAACAAAAAT
1 AACAACAAAAAT
*
54336 AAC-ACGAAAAT
1 AACAACAAAAAT
*
54347 AGCAATCAAAA
1 AACAA-CAAAA
54358 CAATAAAAAA
Statistics
Matches: 84, Mismatches: 21, Indels: 15
0.70 0.17 0.12
Matches are distributed among these distances:
9 7 0.08
11 24 0.29
12 48 0.57
13 5 0.06
ACGTcount: A:0.68, C:0.18, G:0.06, T:0.08
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:54307 original size:11 final size:11
Alignment explanation
Indices: 54293--54350 Score: 62
Period size: 12 Copynumber: 5.1 Consensus size: 11
54283 ATTAAAAACA
54293 ACAAAAATAGC
1 ACAAAAATAGC
*
54304 ACAAAAACAGC
1 ACAAAAATAGC
*
54315 AACAAAAATAAC
1 -ACAAAAATAGC
*
54327 AACAAAAATAAC
1 -ACAAAAATAGC
*
54339 ACGAAAATAGC
1 ACAAAAATAGC
54350 A
1 A
54351 ATCAAAACAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
11 20 0.49
12 21 0.51
ACGTcount: A:0.67, C:0.19, G:0.07, T:0.07
Consensus pattern (11 bp):
ACAAAAATAGC
Found at i:54318 original size:35 final size:35
Alignment explanation
Indices: 54289--54391 Score: 111
Period size: 35 Copynumber: 3.0 Consensus size: 35
54279 CAACATTAAA
*
54289 AACAACAAAAATAGCACAAAAACAGCAACAAAAAT
1 AACAACAAAAATAACACAAAAACAGCAACAAAAAT
* * *
54324 AACAACAAAAATAACACGAAAATAGCAATC-AAAAC
1 AACAACAAAAATAACACAAAAACAGCAA-CAAAAAT
* * * *
54359 AATAA-AAAAACAACTCAAAAACAGCAAAAAAAA
1 AACAACAAAAATAACACAAAAACAGCAACAAAAA
54392 AGCAACCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
34 22 0.39
35 33 0.59
36 1 0.02
ACGTcount: A:0.70, C:0.18, G:0.05, T:0.07
Consensus pattern (35 bp):
AACAACAAAAATAACACAAAAACAGCAACAAAAAT
Found at i:54345 original size:23 final size:23
Alignment explanation
Indices: 54233--54357 Score: 62
Period size: 23 Copynumber: 5.4 Consensus size: 23
54223 ATAACATCCA
* *
54233 AACAACAAAAATAACAACCAAAAC
1 AACAACAAAAATAAC-ACGAAAAT
* *
54257 AGA-AGCAAAAATAACA-GTAAAAC
1 A-ACAACAAAAATAACACG-AAAAT
** *
54280 AACATTAAAAACAACA--AAAAT
1 AACAACAAAAATAACACGAAAAT
* * * *
54301 AGC-ACAAAAACAGCAACAAAAAT
1 AACAACAAAAATAAC-ACGAAAAT
54324 AACAACAAAAATAACACGAAAAT
1 AACAACAAAAATAACACGAAAAT
*
54347 AGCAATCAAAA
1 AACAA-CAAAA
54358 CAATAAAAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 16
0.72 0.14 0.15
Matches are distributed among these distances:
20 8 0.10
21 7 0.09
22 1 0.01
23 35 0.45
24 26 0.33
25 1 0.01
ACGTcount: A:0.68, C:0.18, G:0.06, T:0.08
Consensus pattern (23 bp):
AACAACAAAAATAACACGAAAAT
Found at i:54368 original size:23 final size:22
Alignment explanation
Indices: 54342--54414 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
54332 AAATAACACG
* *
54342 AAAATAGCAATCAAAACAAT-A
1 AAAAAAGCAATCAAAACAGTAA
*
54363 AAAAAA-CAACTCAAAAACAGCAAA
1 AAAAAAGCAA-TC-AAAACAG-TAA
*
54387 AAAAAAGCAACCAAAACAGTAA
1 AAAAAAGCAATCAAAACAGTAA
54409 AAAAAA
1 AAAAAA
54415 AAAAGCACCA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 3 0.07
21 7 0.17
22 14 0.33
23 7 0.17
24 8 0.19
25 3 0.07
ACGTcount: A:0.71, C:0.16, G:0.05, T:0.07
Consensus pattern (22 bp):
AAAAAAGCAATCAAAACAGTAA
Found at i:54379 original size:22 final size:21
Alignment explanation
Indices: 54342--54413 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
54332 AAATAACACG
* *
54342 AAAATAGCAATCAAAACAATA
1 AAAAAAGCAACCAAAACAATA
*
54363 AAAAAA-CAACTCAAAAACAGCAAA
1 AAAAAAGCAAC-C-AAAACA--ATA
*
54387 AAAAAAGCAACCAAAACAGTA
1 AAAAAAGCAACCAAAACAATA
54408 AAAAAA
1 AAAAAA
54414 AAAAAGCACC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 3 0.07
21 13 0.32
22 6 0.15
23 6 0.15
24 9 0.22
25 4 0.10
ACGTcount: A:0.71, C:0.17, G:0.06, T:0.07
Consensus pattern (21 bp):
AAAAAAGCAACCAAAACAATA
Found at i:54415 original size:23 final size:24
Alignment explanation
Indices: 54362--54415 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
54352 TCAAAACAAT
54362 AAAAAAACAACTCAAAAACAGCAA
1 AAAAAAACAACTCAAAAACAGCAA
*
54386 AAAAAAAGCAAC-C-AAAACAGTAA
1 AAAAAAA-CAACTCAAAAACAGCAA
54409 AAAAAAA
1 AAAAAAA
54416 AAAGCACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 16 0.57
24 8 0.29
25 4 0.14
ACGTcount: A:0.74, C:0.17, G:0.06, T:0.04
Consensus pattern (24 bp):
AAAAAAACAACTCAAAAACAGCAA
Found at i:58976 original size:18 final size:18
Alignment explanation
Indices: 58953--58991 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
58943 CAATTTTATA
* *
58953 AATATAACTATGTTCATC
1 AATATAAATATGTTAATC
58971 AATATAAATATGTTAATC
1 AATATAAATATGTTAATC
58989 AAT
1 AAT
58992 TTTATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.38
Consensus pattern (18 bp):
AATATAAATATGTTAATC
Found at i:59979 original size:24 final size:24
Alignment explanation
Indices: 59958--60006 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
59948 ACCATAATTT
59958 TAGAATTTTTTTAAATTTTAATAA
1 TAGAATTTTTTTAAATTTTAATAA
* *
59982 TATAATTTTTTTAATTTTTATATAA
1 TAGAATTTTTTTAAATTTTA-ATAA
60007 CTTTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TAGAATTTTTTTAAATTTTAATAA
Found at i:65403 original size:12 final size:12
Alignment explanation
Indices: 65386--65410 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65376 TAATAAGTAG
65386 GCATTTAATGGA
1 GCATTTAATGGA
65398 GCATTTAATGGA
1 GCATTTAATGGA
65410 G
1 G
65411 AACCTGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (12 bp):
GCATTTAATGGA
Found at i:70323 original size:116 final size:116
Alignment explanation
Indices: 70187--70699 Score: 557
Period size: 117 Copynumber: 4.4 Consensus size: 116
70177 CAAAAAATAC
* * *** *
70187 AATTTTTT-GTGTTGACCATCAAATGGCCGACACCCCCTTTTCTCGAAATTTTTTTTGCATTTTT
1 AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTTCTCGAAA--AAATTTACATTTTT
* * * *
70251 TGGTGTTGACCATTGCATGATCGACA-CCCTTTTTTTGAGAAAAAAA-TTCAA
64 AGGTGTTGGCCATTGCATGGTCGACACCCCTTTTCTTGAGAAAAAAATTTCAA
** **
70302 AATTTTTTTTTGTTGGCCATCAAATGGCCGACACCCTCTTTTCTAAAAAAAATTTACATTTTTAG
1 AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTTCTCGAAAAAATTTACATTTTTAG
* * * *
70367 GTGTCGGTCATTGTATGGTAGACACCCCCTTTTCTTGAGAAAAAAATTTCAA
66 GTGTTGGCCATTGCATGGTCGACA-CCCCTTTTCTTGAGAAAAAAATTTCAA
* * *
70419 AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTTTTCGAAAAAAATTACATTTTTGG
1 AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTTCTCGAAAAAATTTACATTTTTAG
*
70484 GTGTTGGCCATTGCATGGCCGACACCTCCTTTTCTTGAGAAAAAAATTTCAA
66 GTGTTGGCCATTGCATGGTCGACACC-CCTTTTCTTGAGAAAAAAATTTCAA
* * ** *
70536 AATTTTTTGGTGTTAGCCATCAAATGGCCGACACCCTCTTTTCTCAAAAAAAAAAATCAAAATTT
1 AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTTCTC----GAAAAAATTTACATTT
** * ** * *
70601 TTTTGTGTTGGTCA-TGCAATGGTCGACACTCCCTTTTCTCAAATAAAAAAATTGCAA
62 TTAGGTGTTGGCCATTGC-ATGGTCGACAC-CCCTTTTCT-TGAGAAAAAAATTTCAA
* * * *
70658 ATTTTTTTTGTGTTGGTCATCAAATGGCCGACACCCCCTTTT
1 AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTT
70700 TATTTGGTAA
Statistics
Matches: 337, Mismatches: 49, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
114 29 0.09
115 8 0.02
116 56 0.17
117 150 0.45
120 3 0.01
121 40 0.12
122 51 0.15
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (116 bp):
AATTTTTTGGTGTTGGCCATCAAATGGCCGACACCCTCTTTTCTCGAAAAAATTTACATTTTTAG
GTGTTGGCCATTGCATGGTCGACACCCCTTTTCTTGAGAAAAAAATTTCAA
Found at i:70431 original size:61 final size:61
Alignment explanation
Indices: 70150--70699 Score: 410
Period size: 56 Copynumber: 9.3 Consensus size: 61
70140 AAATTTAGGC
* *
70150 ATGGCCGACACCCCCTTTT-TTGTTAGACAAAAAA--T-ACAATTTTTT-GTGTTGACCATCAA
1 ATGGCCGACACCCCCTTTTCTTG--AGA-AAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
* ***** * ***
70209 ATGGCCGACACCCCCTTTTCTCGA-AATTTTTTTTGC---ATTTTTTGGTGTTGACCATTGC
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTT-CAAAATTTTTTGGTGTTGGCCATCAA
** * **
70267 ATGATCGACA--CCCTTTTTTTGAGAAAAAAA-TTCAAAATTTTTTTTTGTTGGCCATCAA
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
* * * * * ***
70325 ATGGCCGACACCCTCTTTTC-T-A-AAAAAAATTT--ACATTTTTAGGTGTCGGTCATTGT
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
**
70381 ATGGTAGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
* * * * ***
70442 ATGGCCGACACCCTCTTTT-TT-CGAAAAAAA-TT--ACATTTTTGGGTGTTGGCCATTGC
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
* *
70498 ATGGCCGACACCTCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTAGCCATCAA
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
* * * ** * *
70559 ATGGCCGACACCCTCTTTTC-TCAAAAAAAAAAATCAAAATTTTTTTGTGTTGGTCATGC-A
1 ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCAT-CAA
* * ** * * * * *
70619 ATGGTCGACACTCCCTTTTCTCAAATAAAAAAATTGCAAATTTTTTTTGTGTTGGTCATCAA
1 ATGGCCGACACCCCCTTTTCT-TGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
70681 ATGGCCGACACCCCCTTTT
1 ATGGCCGACACCCCCTTTT
70700 TATTTGGTAA
Statistics
Matches: 378, Mismatches: 86, Indels: 51
0.73 0.17 0.10
Matches are distributed among these distances:
55 1 0.00
56 81 0.21
57 20 0.05
58 59 0.16
59 40 0.11
60 58 0.15
61 71 0.19
62 48 0.13
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (61 bp):
ATGGCCGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
Found at i:70725 original size:61 final size:58
Alignment explanation
Indices: 70150--70718 Score: 348
Period size: 61 Copynumber: 9.6 Consensus size: 58
70140 AAATTTAGGC
* *
70150 ATGGCCGACACCCCCTTTTTTGTTAGACAAAAAA-TACAATTTTTT-GTGTTGACCATCAA
1 ATGGCCGACACCCCC-TTTTT-TTAGA-AAAAAATTAAAATTTTTTGGTGTTGGCCATCAA
* * **** *** * ***
70209 ATGGCCGACACCCCC-TTTTCTCGAAATTTTTTTTGCATTTTTTGGTGTTGACCATTGC
1 ATGGCCGACACCCCCTTTTTTTAGAAA-AAAATTAAAATTTTTTGGTGTTGGCCATCAA
** **
70267 ATGATCGACA--CCCTTTTTTTGAGAAAAAAATTCAAAATTTTTTTTTGTTGGCCATCAA
1 ATGGCCGACACCCCCTTTTTTT-AGAAAAAAATT-AAAATTTTTTGGTGTTGGCCATCAA
* * * * * * * ***
70325 ATGGCCGACACCCTC-TTTTCTA-AAAAAAATTTACATTTTTAGGTGTCGGTCATTGT
1 ATGGCCGACACCCCCTTTTTTTAGAAAAAAATTAAAATTTTTTGGTGTTGGCCATCAA
** *
70381 ATGGTAGACACCCCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTGGCCATCAA
1 ATGGCCGACACCCCCTTTT-TTTAGAAAAAAA-TT-AAAATTTTTTGGTGTTGGCCATCAA
* * * * ***
70442 ATGGCCGACACCCTC-TTTTTTCGAAAAAAATT-ACATTTTTGGGTGTTGGCCATTGC
1 ATGGCCGACACCCCCTTTTTTTAGAAAAAAATTAAAATTTTTTGGTGTTGGCCATCAA
* * *
70498 ATGGCCGACACCTCCTTTTCTTGAGAAAAAAATTTCAAAATTTTTTGGTGTTAGCCATCAA
1 ATGGCCGACACCCCCTTTT-TTTAGAAAAAAA-TT-AAAATTTTTTGGTGTTGGCCATCAA
* ** * * * *
70559 ATGGCCGACACCCTCTTTTCTCAAAAAAAAAAATCAAAATTTTTTTGTGTTGGTCATGC-A
1 ATGGCCGACACCCCCTTTT-T-TTAGAAAAAAATTAAAATTTTTTGGTGTTGGCCAT-CAA
* * ** * * * *
70619 ATGGTCGACACTCCCTTTTCTCAAATAAAAAAATTGCAAATTTTTTTTGTGTTGGTCATCAA
1 ATGGCCGACACCCCCTTTT-T-TTAGAAAAAAATT--AAAATTTTTTGGTGTTGGCCATCAA
*
70681 ATGGCCGACACCCCCTTTTTATTTGGTAAAAAAATTAA
1 ATGGCCGACACCCCC-TTTT-TTTAG-AAAAAAATTAA
70719 TTTTTTTAGA
Statistics
Matches: 387, Mismatches: 98, Indels: 48
0.73 0.18 0.09
Matches are distributed among these distances:
55 2 0.01
56 65 0.17
57 34 0.09
58 62 0.16
59 39 0.10
60 57 0.15
61 71 0.18
62 43 0.11
63 14 0.04
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (58 bp):
ATGGCCGACACCCCCTTTTTTTAGAAAAAAATTAAAATTTTTTGGTGTTGGCCATCAA
Found at i:71342 original size:24 final size:24
Alignment explanation
Indices: 71315--71368 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
71305 CAATTACTAG
* *
71315 CCCGATTACGAGCCTCAGGACCAA
1 CCCGATTACGAGCCGCAGCACCAA
* * *
71339 CCCGAGTACTAGCCGGAGCACCAA
1 CCCGATTACGAGCCGCAGCACCAA
71363 CCCGAT
1 CCCGAT
71369 CCCAAATATC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.28, C:0.39, G:0.22, T:0.11
Consensus pattern (24 bp):
CCCGATTACGAGCCGCAGCACCAA
Found at i:71830 original size:30 final size:30
Alignment explanation
Indices: 71796--71856 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
71786 GATTTTTTTC
71796 CGTTTACT-TTTTAAATTTAATTTGTAATTT
1 CGTTT-CTATTTTAAATTTAATTTGTAATTT
* *
71826 CGTTTTTATTTTAAATTTAATTTTTAATTT
1 CGTTTCTATTTTAAATTTAATTTGTAATTT
71856 C
1 C
71857 CTGTATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.62
Consensus pattern (30 bp):
CGTTTCTATTTTAAATTTAATTTGTAATTT
Found at i:71866 original size:30 final size:30
Alignment explanation
Indices: 71804--71894 Score: 105
Period size: 30 Copynumber: 3.1 Consensus size: 30
71794 TCCGTTTACT
* * * *
71804 TTTTAAATTTAATTTGTAATTTCGTTTTTA
1 TTTTAAATTTAATTTTTAATTTCCTATATA
*
71834 TTTTAAATTTAATTTTTAATTTCCTGTATA
1 TTTTAAATTTAATTTTTAATTTCCTATATA
*
71864 TTTT--ATTTTATTTTCTAATTTCCTATATA
1 TTTTAAATTTAATTTT-TAATTTCCTATATA
71893 TT
1 TT
71895 CTAATTATTA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
28 9 0.17
29 15 0.28
30 30 0.56
ACGTcount: A:0.26, C:0.07, G:0.03, T:0.64
Consensus pattern (30 bp):
TTTTAAATTTAATTTTTAATTTCCTATATA
Found at i:71883 original size:29 final size:29
Alignment explanation
Indices: 71839--71909 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
71829 TTTTATTTTA
* *
71839 AATTTAATTTTTAATTTCCTGTATATT-T
1 AATTTTATTTTTAATTTCCTATATATTCT
*
71867 TATTTTATTTTCTAATTTCCTATATATTCT
1 AATTTTATTTT-TAATTTCCTATATATTCT
71897 AATTATTATTTTT
1 AATT-TTATTTTT
71910 TTAAAATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 9 0.25
29 15 0.42
30 5 0.14
31 7 0.19
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.63
Consensus pattern (29 bp):
AATTTTATTTTTAATTTCCTATATATTCT
Found at i:72340 original size:59 final size:58
Alignment explanation
Indices: 72216--72468 Score: 217
Period size: 59 Copynumber: 4.3 Consensus size: 58
72206 AGAAAAGGAG
* * *
72216 ATGGCCAACACCAAAAAACTTTGAAATTTTTTTCTCGAGAAAAG-GGAGTGTCGGCCATGCA
1 ATGGCCAACACC-AAAAA-TGT-AAATTTTTTTCTCAAGAAAAGAGG-GTGTCGGCCATGTA
* * * * * * *
72277 ATGGCCTACACCTAGAAATGCAAATTTTTTTTTCAAGAAAATAGGGTGTCGGCCATTTG
1 ATGGCCAACACC-AAAAATGTAAATTTTTTTCTCAAGAAAAGAGGGTGTCGGCCATGTA
* * * ** *
72336 ATGGCCAACACCAAAAAATTTTGAATTTTTTTCTCAA-AAAGGA-AATGTCAGCCATGTA
1 ATGGCCAACACC-AAAAA-TGTAAATTTTTTTCTCAAGAAAAGAGGGTGTCGGCCATGTA
* * * *
72394 ATGGCCAACATCCAAAAATGTAAATTTTTTT-TCTAGAAAAGGGGGTGTCGGCCATTTG
1 ATGGCCAACA-CCAAAAATGTAAATTTTTTTCTCAAGAAAAGAGGGTGTCGGCCATGTA
*
72452 ATGGCCAACACAAAAAA
1 ATGGCCAACACCAAAAA
72469 ATTACATTTT
Statistics
Matches: 151, Mismatches: 36, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
56 3 0.02
57 21 0.14
58 45 0.30
59 50 0.33
60 17 0.11
61 15 0.10
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (58 bp):
ATGGCCAACACCAAAAATGTAAATTTTTTTCTCAAGAAAAGAGGGTGTCGGCCATGTA
Found at i:72398 original size:58 final size:59
Alignment explanation
Indices: 72216--72480 Score: 229
Period size: 58 Copynumber: 4.5 Consensus size: 59
72206 AGAAAAGGAG
* * *
72216 ATGGCCAACACCAAAAAACTTTGAAATTTTTTTCTCGAGAAAAGGGAGTGTCGGCCATGCA
1 ATGGCCAACACCAAAAAA-TGT-AAATTTTTTTCTCGAGAAAAGGAAGTGTCGGCCATGTA
* * * * * * * *
72277 ATGGCCTACACCTAGAAATGCAAATTTTTTTTTCAAGAAAATAGG--GTGTCGGCCATTTG
1 ATGGCCAACACCAAAAAATGTAAATTTTTTTCTCGAG-AAA-AGGAAGTGTCGGCCATGTA
* * * *
72336 ATGGCCAACACCAAAAAATTTTGAATTTTTTTCTC-A-AAAAGGAAATGTCAGCCATGTA
1 ATGGCCAACACCAAAAAA-TGTAAATTTTTTTCTCGAGAAAAGGAAGTGTCGGCCATGTA
* ** * *
72394 ATGGCCAACATCC-AAAAATGTAAATTTTTTT-TCTAGAAAAGGGGGTGTCGGCCATTTG
1 ATGGCCAACA-CCAAAAAATGTAAATTTTTTTCTCGAGAAAAGGAAGTGTCGGCCATGTA
* *
72452 ATGGCCAACACAAAAAAAT-TACATTTTTT
1 ATGGCCAACACCAAAAAATGTAAATTTTTT
72481 ATCTGACAAA
Statistics
Matches: 164, Mismatches: 31, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
56 5 0.03
57 25 0.15
58 57 0.35
59 43 0.26
60 16 0.10
61 18 0.11
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (59 bp):
ATGGCCAACACCAAAAAATGTAAATTTTTTTCTCGAGAAAAGGAAGTGTCGGCCATGTA
Found at i:72460 original size:116 final size:120
Alignment explanation
Indices: 72215--72471 Score: 362
Period size: 116 Copynumber: 2.2 Consensus size: 120
72205 GAGAAAAGGA
* * * *
72215 GATGGCCAACACCAAAAAACTTTGAAATTTTTTTCTCGAGAAAAGGGAGTGTCGGCCATGCAATG
1 GATGGCCAACACCAAAAAATTTTGAAATTTTTTTCTCGAGAAAAGGAAATGTCAGCCATGCAATG
* * *
72280 GCCTACACCTAGAAATGCAAATTTTTTTTTCAAGAAAATAGGGTGTCGGCCATTT
66 GCCAACACCTAAAAATGCAAATTTTTTTTTCAAGAAAAGAGGGTGTCGGCCATTT
*
72335 GATGGCCAACACCAAAAAATTTTG-AATTTTTTTCTC-A-AAAAGGAAATGTCAGCCATGTAATG
1 GATGGCCAACACCAAAAAATTTTGAAATTTTTTTCTCGAGAAAAGGAAATGTCAGCCATGCAATG
* * *
72397 GCCAACATCC-AAAAATGTAAA-TTTTTTTTCTAGAAAAGGGGGTGTCGGCCATTT
66 GCCAACA-CCTAAAAATGCAAATTTTTTTTTCAAGAAAAGAGGGTGTCGGCCATTT
*
72451 GATGGCCAACACAAAAAAATT
1 GATGGCCAACACCAAAAAATT
72472 ACATTTTTTA
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
116 50 0.40
117 36 0.29
118 3 0.02
119 12 0.10
120 23 0.19
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (120 bp):
GATGGCCAACACCAAAAAATTTTGAAATTTTTTTCTCGAGAAAAGGAAATGTCAGCCATGCAATG
GCCAACACCTAAAAATGCAAATTTTTTTTTCAAGAAAAGAGGGTGTCGGCCATTT
Found at i:87315 original size:23 final size:23
Alignment explanation
Indices: 87285--87344 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
87275 TTATTGCAGA
87285 GGCAAGTTGATGCTAAAGATGGT
1 GGCAAGTTGATGCTAAAGATGGT
87308 GGCAAGTTGATGCTAAAGATGGT
1 GGCAAGTTGATGCTAAAGATGGT
*
87331 GGCAAGTTGCTGCT
1 GGCAAGTTGATGCT
87345 GACGTGGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.12, G:0.35, T:0.27
Consensus pattern (23 bp):
GGCAAGTTGATGCTAAAGATGGT
Found at i:87548 original size:24 final size:23
Alignment explanation
Indices: 87511--87557 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
87501 ATTGGACTTG
*
87511 ATTTAAATAGATTTAAACTTTAA
1 ATTTAAATAAATTTAAACTTTAA
*
87534 ATTTATAATAAATTTAAATTTTAA
1 ATTTA-AATAAATTTAAACTTTAA
87558 GTAAATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTAAATAAATTTAAACTTTAA
Found at i:87549 original size:17 final size:17
Alignment explanation
Indices: 87524--87586 Score: 83
Period size: 17 Copynumber: 3.6 Consensus size: 17
87514 TAAATAGATT
87524 TAAACTTTAAATTTATAA
1 TAAA-TTTAAATTTATAA
87542 TAAATTTAAATTT-TAA
1 TAAATTTAAATTTATAA
* *
87558 GTAAATTTAAACTTAAAA
1 -TAAATTTAAATTTATAA
87576 TAAATTTAAAT
1 TAAATTTAAAT
87587 CCTGTTGGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
16 3 0.08
17 31 0.77
18 6 0.15
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (17 bp):
TAAATTTAAATTTATAA
Found at i:87551 original size:6 final size:6
Alignment explanation
Indices: 87521--87586 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
87511 ATTTAAATAG
* *
87521 ATTTAA ACTTTAA ATTTATA A--TAA ATTTAA ATTTTA A-GTAA ATTTAA
1 ATTTAA A-TTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
* *
87568 ACTTAA A-ATAA ATTTAA AT
1 ATTTAA ATTTAA ATTTAA AT
87587 CCTGTTGGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
4 2 0.04
5 9 0.19
6 28 0.60
7 8 0.17
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (6 bp):
ATTTAA
Found at i:93858 original size:27 final size:27
Alignment explanation
Indices: 93828--93882 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
93818 TTACACCCTT
93828 TCATGTAAGAGCTATCAATTGGCAATC
1 TCATGTAAGAGCTATCAATTGGCAATC
93855 TCATGTAAGAGCTATCAATTGGCAATC
1 TCATGTAAGAGCTATCAATTGGCAATC
93882 T
1 T
93883 TTGCAGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (27 bp):
TCATGTAAGAGCTATCAATTGGCAATC
Found at i:109276 original size:21 final size:21
Alignment explanation
Indices: 109232--109277 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
109222 AGAAACATAG
* *
109232 CCAATTTACTTGTGTTATTCA
1 CCAATTTACTTGTCTTATCCA
109253 CCAATTTACTTGTCTTA-CCAA
1 CCAATTTACTTGTCTTATCC-A
109274 CCAA
1 CCAA
109278 AACCTTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.28, C:0.26, G:0.07, T:0.39
Consensus pattern (21 bp):
CCAATTTACTTGTCTTATCCA
Found at i:124400 original size:22 final size:22
Alignment explanation
Indices: 124375--124421 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
124365 ATGTAATTAT
124375 AAAAA-TAAATAAAAATGGTTAA
1 AAAAATTAAA-AAAAATGGTTAA
* *
124397 AAAAATTAGAAAAAATGGTTTA
1 AAAAATTAAAAAAAATGGTTAA
124419 AAA
1 AAA
124422 TATCAAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (22 bp):
AAAAATTAAAAAAAATGGTTAA
Found at i:127035 original size:18 final size:17
Alignment explanation
Indices: 127014--127055 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
127004 TTAATTTTTG
127014 TAAAAAATATTAATACAA
1 TAAAAAATATTAATA-AA
127032 T-AAAAA-ATTAATAAA
1 TAAAAAATATTAATAAA
127047 TACAAAAAT
1 TA-AAAAAT
127056 CAAAATCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
15 3 0.14
16 7 0.33
17 10 0.48
18 1 0.05
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (17 bp):
TAAAAAATATTAATAAA
Found at i:127041 original size:16 final size:15
Alignment explanation
Indices: 127016--127055 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
127006 AATTTTTGTA
127016 AAAAATATTAATACAAT
1 AAAAA-ATTAATA-AAT
127033 AAAAAATTAATAAAT
1 AAAAAATTAATAAAT
127048 ACAAAAAT
1 A-AAAAAT
127056 CAAAATCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 13 0.59
17 5 0.23
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAAAATTAATAAAT
Found at i:128864 original size:13 final size:13
Alignment explanation
Indices: 128846--128871 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
128836 TTTAATTGAT
128846 TTGTTATTTAATG
1 TTGTTATTTAATG
128859 TTGTTATTTAATG
1 TTGTTATTTAATG
128872 GAGGGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (13 bp):
TTGTTATTTAATG
Found at i:132597 original size:2 final size:2
Alignment explanation
Indices: 132590--132616 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
132580 CCAATCTGAC
132590 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
132617 TTGTTTTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:134164 original size:19 final size:19
Alignment explanation
Indices: 134128--134181 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
134118 TATATATTTG
134128 TTTT-TATATTATTCTTG-AA
1 TTTTATATATT-TT-TTGAAA
134147 TATTTATATATTTTTTGAAA
1 T-TTTATATATTTTTTGAAA
*
134167 TTTTATGTATTTTTT
1 TTTTATATATTTTTT
134182 ATTTTGAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
19 17 0.55
20 8 0.26
21 6 0.19
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TTTTATATATTTTTTGAAA
Found at i:139195 original size:14 final size:14
Alignment explanation
Indices: 139164--139194 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
139154 TTATTTTGTC
139164 AAATTAAAATCTAA
1 AAATTAAAATCTAA
139178 AAATTCAAAATCTAA
1 AAATT-AAAATCTAA
139193 AA
1 AA
139195 TAGTAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATTAAAATCTAA
Found at i:151295 original size:14 final size:15
Alignment explanation
Indices: 151268--151296 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
151258 GATTGTTATT
151268 TTTAAAAATATAATG
1 TTTAAAAATATAATG
151283 TTTAAAAAT-TAATG
1 TTTAAAAATATAATG
151297 GTCAAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (15 bp):
TTTAAAAATATAATG
Found at i:160776 original size:14 final size:15
Alignment explanation
Indices: 160744--160776 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
160734 GATAATATTA
160744 TTAATTATTATAGAT
1 TTAATTATTATAGAT
*
160759 TTAATTTTTATA-AT
1 TTAATTATTATAGAT
160773 TTAA
1 TTAA
160777 AAATTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAATTATTATAGAT
Found at i:163592 original size:5 final size:5
Alignment explanation
Indices: 163584--163611 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
163574 TCCTTTTCCT
163584 TCTCA TCTCA TCTCA TCTCA TCTCA TCT
1 TCTCA TCTCA TCTCA TCTCA TCTCA TCT
163612 TATGTTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.39, G:0.00, T:0.43
Consensus pattern (5 bp):
TCTCA
Found at i:165840 original size:16 final size:16
Alignment explanation
Indices: 165780--165844 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
165770 TATATATGTG
*
165780 TGTGTGTGTGTGTGTG
1 TGTGTGTGTGTGTGTA
165796 TGTGTGTGTGTGTGTA
1 TGTGTGTGTGTGTGTA
165812 TGTGTGTGTGTGTGTA
1 TGTGTGTGTGTGTGTA
* *
165828 TGTGTGAGAGTGTGTA
1 TGTGTGTGTGTGTGTA
165844 T
1 T
165845 AAGGTGTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.08, C:0.00, G:0.45, T:0.48
Consensus pattern (16 bp):
TGTGTGTGTGTGTGTA
Found at i:165842 original size:2 final size:2
Alignment explanation
Indices: 165776--165833 Score: 98
Period size: 2 Copynumber: 29.0 Consensus size: 2
165766 CCAATATATA
*
165776 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
*
165818 TG TG TG TG TA TG TG TG
1 TG TG TG TG TG TG TG TG
165834 AGAGTGTGTA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (2 bp):
TG
Found at i:166035 original size:21 final size:21
Alignment explanation
Indices: 166011--166052 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
166001 TATGAACAAC
166011 TCTTAGGTTTTCCTACTCTAA
1 TCTTAGGTTTTCCTACTCTAA
166032 TCTTAGGTTTTCCTACTCTAA
1 TCTTAGGTTTTCCTACTCTAA
166053 CCTAGCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.10, T:0.48
Consensus pattern (21 bp):
TCTTAGGTTTTCCTACTCTAA
Found at i:186902 original size:64 final size:64
Alignment explanation
Indices: 186801--186929 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
186791 ATTTATCAAA
186801 ATCCTAAAATAATATATCTTAGATGTCATTTATTAGCTTTCTTAAAGAGTTTTTAAAATAAAAT
1 ATCCTAAAATAATATATCTTAGATGTCATTTATTAGCTTTCTTAAAGAGTTTTTAAAATAAAAT
186865 ATCCTAAAATAATATATCTTAGATGTCATTTATTAGCTTTCTTAAAGAGTTTTTAAAATAAAAT
1 ATCCTAAAATAATATATCTTAGATGTCATTTATTAGCTTTCTTAAAGAGTTTTTAAAATAAAAT
186929 A
1 A
186930 CTTAGAAAAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (64 bp):
ATCCTAAAATAATATATCTTAGATGTCATTTATTAGCTTTCTTAAAGAGTTTTTAAAATAAAAT
Found at i:194611 original size:28 final size:28
Alignment explanation
Indices: 194571--194630 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
194561 TACTTGACCC
*
194571 AATT-TTTTATTCT-TATTATTTTTAAA
1 AATTATTTTATTCTCAATTATTTTTAAA
194597 ATATTATTTTATTCTCAATTATTTTTAAA
1 A-ATTATTTTATTCTCAATTATTTTTAAA
194626 AATTA
1 AATTA
194631 ATAATCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 1 0.03
27 3 0.10
28 13 0.43
29 13 0.43
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (28 bp):
AATTATTTTATTCTCAATTATTTTTAAA
Found at i:194771 original size:21 final size:21
Alignment explanation
Indices: 194726--194771 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
194716 AACTTTAAAA
*
194726 ATAA-ACACGTAAAATCACAT
1 ATAATACACGTAAAATCAAAT
*
194746 ATAATACACGTAACATGCAAAT
1 ATAATACACGTAAAAT-CAAAT
194768 -TAAT
1 ATAAT
194772 TTTATGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 4 0.18
ACGTcount: A:0.52, C:0.17, G:0.07, T:0.24
Consensus pattern (21 bp):
ATAATACACGTAAAATCAAAT
Found at i:200114 original size:12 final size:11
Alignment explanation
Indices: 200082--200128 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
200072 GAACTAGTTG
*
200082 AATAAATTTTT
1 AATAATTTTTT
*
200093 AA-ATTTTTTT
1 AATAATTTTTT
200103 AATGAATTTTTT
1 AAT-AATTTTTT
200115 AATAATTTATTT
1 AATAATTT-TTT
200127 AA
1 AA
200129 CAGAACCGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 8 0.27
11 7 0.23
12 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (11 bp):
AATAATTTTTT
Found at i:204203 original size:5 final size:5
Alignment explanation
Indices: 204193--204217 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
204183 ATCCTTTGAA
204193 GGAGG GGAGG GGAGG GGAGG GGAGG
1 GGAGG GGAGG GGAGG GGAGG GGAGG
204218 CTGCTGCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00
Consensus pattern (5 bp):
GGAGG
Found at i:216503 original size:28 final size:27
Alignment explanation
Indices: 216472--216533 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
216462 ATATATGTTA
216472 ATATTTATTAAATAATTAAAAGTATTTT
1 ATATTTATTAAATAATTAAAA-TATTTT
** * *
216500 ATATGAAATAAATAATTAAAATTTTTT
1 ATATTTATTAAATAATTAAAATATTTT
216527 A-ATTTAT
1 ATATTTAT
216534 GTTAAATTTG
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
26 3 0.11
27 6 0.22
28 18 0.67
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (27 bp):
ATATTTATTAAATAATTAAAATATTTT
Found at i:216616 original size:23 final size:23
Alignment explanation
Indices: 216566--216627 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
216556 TATATGAATC
216566 AAATA-TAAAAT-ATAATAGCTG
1 AAATATTAAAATAATAATAGCTG
* *
216587 AATTATTAAAATAATAATTG-TG
1 AAATATTAAAATAATAATAGCTG
*
216609 AAAATATTATAATATATAA
1 -AAATATTAAAATA-ATAA
216628 AAATTAGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 4 0.12
22 8 0.24
23 17 0.52
24 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (23 bp):
AAATATTAAAATAATAATAGCTG
Found at i:217905 original size:13 final size:13
Alignment explanation
Indices: 217889--217915 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
217879 TTTATTTTAA
217889 TTTTTAAAATTTT
1 TTTTTAAAATTTT
217902 TTTTTAAAATTTT
1 TTTTTAAAATTTT
217915 T
1 T
217916 CACCCATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTAAAATTTT
Found at i:217905 original size:19 final size:20
Alignment explanation
Indices: 217867--217904 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
217857 CTTTCAATGG
*
217867 AATTTTTATGAATTTATTTT
1 AATTTTTATAAATTTATTTT
217887 AATTTTTA-AAATTT-TTTT
1 AATTTTTATAAATTTATTTT
217905 TTAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (20 bp):
AATTTTTATAAATTTATTTT
Found at i:246874 original size:24 final size:23
Alignment explanation
Indices: 246830--246875 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
246820 TTAAAATAAT
* *
246830 AAAATTATATTTTTATCATCATA
1 AAAATTATAATTTAATCATCATA
*
246853 AAAATATATAATTTAATTATCAT
1 AAAAT-TATAATTTAATCATCAT
246876 CCCTAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAATTATAATTTAATCATCATA
Found at i:251484 original size:12 final size:13
Alignment explanation
Indices: 251450--251483 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
251440 TTATTCATAT
*
251450 ATTTTTTTAGATTA
1 ATTTTTTTA-TTTA
251464 ATTTTTTTATTTA
1 ATTTTTTTATTTA
251477 ATTTTTT
1 ATTTTTT
251484 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (13 bp):
ATTTTTTTATTTA
Found at i:253233 original size:40 final size:40
Alignment explanation
Indices: 253178--253259 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
253168 ACCAGATCAC
253178 ATAACCTTCACTTTCTCCTTCTTCTATAAGAAGATTAAGA
1 ATAACCTTCACTTTCTCCTTCTTCTATAAGAAGATTAAGA
253218 ATAACCTTCACTTTCTCCTTCTTCTATAAGAAGATTAAGA
1 ATAACCTTCACTTTCTCCTTCTTCTATAAGAAGATTAAGA
253258 AT
1 AT
253260 GTGACGTGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (40 bp):
ATAACCTTCACTTTCTCCTTCTTCTATAAGAAGATTAAGA
Found at i:254269 original size:17 final size:17
Alignment explanation
Indices: 254249--254284 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
254239 TATAAAATAA
254249 AAAAATATTT-ATTTATT
1 AAAAAT-TTTAATTTATT
254266 AAAAATTTTAATTTATT
1 AAAAATTTTAATTTATT
254283 AA
1 AA
254285 GTAATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAAATTTTAATTTATT
Found at i:255519 original size:10 final size:10
Alignment explanation
Indices: 255484--255525 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
255474 TGTGGTTCAG
255484 AATATTATAA
1 AATATTATAA
255494 AATTATT-TAA
1 AA-TATTATAA
255504 AA-ATTATAA
1 AATATTATAA
255513 AATATTATAA
1 AATATTATAA
255523 AAT
1 AAT
255526 TATCGATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 3 0.10
9 5 0.17
10 17 0.59
11 4 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AATATTATAA
Found at i:255627 original size:29 final size:28
Alignment explanation
Indices: 255538--255627 Score: 83
Period size: 29 Copynumber: 3.1 Consensus size: 28
255528 TCGATAATTA
* *
255538 ATAAAAAAAATTTAACAAACTACAAAA-
1 ATAAAAAAAATATAATAAACTACAAAAT
* * *
255565 ATAAAAAAAATATATTATAAAATGAGAAACT
1 ATAAAAAAAATATA--ATAAACT-ACAAAAT
*
255596 ATAAATAAAATATAATAAACTACAAAAGT
1 ATAAAAAAAATATAATAAACTACAAAA-T
255625 ATA
1 ATA
255628 TTTCACACCT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
27 13 0.27
28 4 0.08
29 15 0.31
30 4 0.08
31 13 0.27
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (28 bp):
ATAAAAAAAATATAATAAACTACAAAAT
Found at i:256557 original size:3 final size:3
Alignment explanation
Indices: 256542--256571 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
256532 ATTAGTGTAA
*
256542 AAT AAT AAA AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
256572 GTAAAGAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:264854 original size:12 final size:12
Alignment explanation
Indices: 264816--264854 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
264806 AAATGTTTTG
264816 AATAATTTAATT
1 AATAATTTAATT
*
264828 AATATTTTGAA-T
1 AATAATTT-AATT
264840 AATAATTTAATT
1 AATAATTTAATT
264852 AAT
1 AAT
264855 TTAAATAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 2 0.09
12 19 0.83
13 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
AATAATTTAATT
Found at i:265418 original size:1 final size:1
Alignment explanation
Indices: 265384--265410 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
265374 NNNNNNNNNN
265384 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
265411 GGTAAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:265502 original size:34 final size:34
Alignment explanation
Indices: 265464--265540 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 34
265454 CCCAATCAAC
* * * *
265464 TTAAATTTATTTTAAAATTAAGTTTATTCTAAAT
1 TTAAATTTAGTTGAAAATTAAATTTATTATAAAT
* *
265498 TTAAATTTGGTTGAAATTTAAATTTATTATAAAT
1 TTAAATTTAGTTGAAAATTAAATTTATTATAAAT
265532 TTAAATTTA
1 TTAAATTTA
265541 AAATTTATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (34 bp):
TTAAATTTAGTTGAAAATTAAATTTATTATAAAT
Found at i:265550 original size:17 final size:17
Alignment explanation
Indices: 265464--265540 Score: 84
Period size: 17 Copynumber: 4.5 Consensus size: 17
265454 CCCAATCAAC
* *
265464 TTAAATTTATTTTAAAA
1 TTAAATTTATTATAAAT
* *
265481 TTAAGTTTATTCTAAAT
1 TTAAATTTATTATAAAT
* *
265498 TTAAATTTGGTT-GAAAT
1 TTAAATTT-ATTATAAAT
265515 TTAAATTTATTATAAAT
1 TTAAATTTATTATAAAT
265532 TTAAATTTA
1 TTAAATTTA
265541 AAATTTATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
16 2 0.04
17 46 0.92
18 2 0.04
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (17 bp):
TTAAATTTATTATAAAT
Found at i:267319 original size:29 final size:28
Alignment explanation
Indices: 267275--267622 Score: 292
Period size: 29 Copynumber: 11.9 Consensus size: 28
267265 CCTCGAAGGT
267275 CCCTAAACCTTCCAAAAATTACCATTTTAC
1 CCCTAAA-CTTCCAAAAA-TACCATTTTAC
*
267305 CCCTAAACTTCCAAAAATCCCATTTTGA-
1 CCCTAAACTTCCAAAAATACCATTTT-AC
*
267333 CCCTGAATCTTCCAAAAATTACCATTTTAC
1 CCCT-AAACTTCCAAAAA-TACCATTTTAC
** *
267363 CCCCGAACTTCCAAAAATCCCATTTTTGAC
1 CCCTAAACTTCCAAAAATACCA-TTTT-AC
* *
267393 CCC-AAACCTTCCAAAATTACCAATTTA-
1 CCCTAAA-CTTCCAAAAATACCATTTTAC
*
267420 CCCTCAAACTTCCAAAAATCCCATTTTTGAC
1 CCCT-AAACTTCCAAAAATACCA-TTTT-AC
*
267451 CCCT-AACTTTCCAAAAATTACCATTTTAT
1 CCCTAAAC-TTCCAAAAA-TACCATTTTAC
* *
267480 CCCTAAACTTCCAAAAATCCCATTTTTGAT
1 CCCTAAACTTCCAAAAATACCA-TTTT-AC
* *
267510 CCCGAATA-TTCCAAAATTACCATTTTAC
1 CCCTAA-ACTTCCAAAAATACCATTTTAC
* *
267538 CCCTAAATTTCCAAAAATCCCATTTTTGAC
1 CCCTAAACTTCCAAAAATACCA-TTTT-AC
* * * *
267568 CTCGAACCTTCCAAAATTACCATTTTAC
1 CCCTAAACTTCCAAAAATACCATTTTAC
** *
267596 CCTCCGAACTTCCAAAAATCCCATTTT
1 CC-CTAAACTTCCAAAAATACCATTTT
267623 CAACCTCGAA
Statistics
Matches: 260, Mismatches: 36, Indels: 45
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.02
28 55 0.21
29 102 0.39
30 90 0.35
31 9 0.03
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (28 bp):
CCCTAAACTTCCAAAAATACCATTTTAC
Found at i:267373 original size:58 final size:58
Alignment explanation
Indices: 267275--267622 Score: 461
Period size: 58 Copynumber: 5.9 Consensus size: 58
267265 CCTCGAAGGT
* *
267275 CCCTAAACCTTCCAAAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCA-TTTTGA
1 CCCTGAACCTTCC-AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGA
* *
267333 CCCTGAATCTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGA
1 CCCTGAACCTTCC-AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGA
** * *
267392 CCCCAAACCTTCCAAAATTACCAATTTACCCTCAAACTTCCAAAAATCCCATTTTTGA
1 CCCTGAACCTTCCAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGA
* * *
267450 CCCCT-AACTTTCCAAAAATTACCATTTTATCCCTAAACTTCCAAAAATCCCATTTTTGA
1 -CCCTGAACCTTCC-AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGA
** * *
267509 TCCC-GAATATTCCAAAATTACCATTTTACCCCTAAATTTCCAAAAATCCCATTTTTGA
1 -CCCTGAACCTTCCAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGA
*
267567 -CCTCGAACCTTCCAAAATTACCATTTTACCCTCCGAACTTCCAAAAATCCCATTTT
1 CCCT-GAACCTTCCAAAATTACCATTTTACCC-CCAAACTTCCAAAAATCCCATTTT
267623 CAACCTCGAA
Statistics
Matches: 257, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
56 2 0.01
58 165 0.64
59 90 0.35
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (58 bp):
CCCTGAACCTTCCAAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGA
Found at i:267489 original size:117 final size:116
Alignment explanation
Indices: 267279--267622 Score: 482
Period size: 117 Copynumber: 2.9 Consensus size: 116
267269 GAAGGTCCCT
267279 AAACCTTCCAAAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCA-TTTTGA-CCCTGAA-T
1 AAACCTTCC-AAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCATTTTTGACCCCT-AACT
*
267341 CTTCCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCCC
64 -TTCCAAAAATTACCATTTTA-CCCTGAACTTCCAAAAATCCCATTTTTGACCCC
*
267396 AAACCTTCCAAAATTACCAATTTA-CCCTCAAACTTCCAAAAATCCCATTTTTGACCCCTAACTT
1 AAACCTTCCAAAATTACCATTTTACCCCT-AAACTTCCAAAAATCCCATTTTTGACCCCTAACTT
* *
267460 TCCAAAAATTACCATTTTATCCCTAAACTTCCAAAAATCCCATTTTTGATCCC
65 TCCAAAAATTACCATTTTA-CCCTGAACTTCCAAAAATCCCATTTTTGACCCC
* ** * * * *
267513 GAATATTCCAAAATTACCATTTTACCCCTAAATTTCCAAAAATCCCATTTTTGACCTCGAACCTT
1 AAACCTTCCAAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCATTTTTGACCCCTAACTTT
267578 CC-AAAATTACCATTTTACCCTCCGAACTTCCAAAAATCCCATTTT
66 CCAAAAATTACCATTTTACCCT--GAACTTCCAAAAATCCCATTTT
267623 CAACCTCGAA
Statistics
Matches: 206, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
115 8 0.04
116 47 0.23
117 142 0.69
118 9 0.04
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (116 bp):
AAACCTTCCAAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCATTTTTGACCCCTAACTTT
CCAAAAATTACCATTTTACCCTGAACTTCCAAAAATCCCATTTTTGACCCC
Found at i:267642 original size:29 final size:29
Alignment explanation
Indices: 267283--267652 Score: 206
Period size: 30 Copynumber: 12.7 Consensus size: 29
267273 GTCCCTAAAC
* * *
267283 CTTCCAAAAATTACCATTTT-ACCCCTAAA
1 CTTCC-AAAATTCCCATTTTAACCTCGAAA
* * *
267312 CTTCCAAAAATCCCATTTTGACC-CTGAAT
1 CTTCCAAAATTCCCATTTTAACCTC-GAAA
* * *
267341 CTTCCAAAAATTACCATTTTACCCCCG-AA
1 CTTCC-AAAATTCCCATTTTAACCTCGAAA
* * *
267370 CTTCCAAAAATCCCATTTTTGACC-CCAAA
1 CTTCCAAAATTCCCA-TTTTAACCTCGAAA
* * *
267399 CCTTCCAAAATTACCAATTTACCCTC-AAA
1 -CTTCCAAAATTCCCATTTTAACCTCGAAA
* * **
267428 CTTCCAAAAATCCCATTTTTGACC-CCTAA
1 CTTCCAAAATTCCCA-TTTTAACCTCGAAA
* * *
267457 CTTTCCAAAAATTACCATTTTATCC-CTAAA
1 C-TTCC-AAAATTCCCATTTTAACCTCGAAA
* *
267487 CTTCCAAAAATCCCATTTTTGATCC-CGAATA
1 CTTCCAAAATTCCCA-TTTT-AACCTCGAA-A
* * *
267518 -TTCCAAAATTACCATTTT-ACCCCTAAA
1 CTTCCAAAATTCCCATTTTAACCTCGAAA
* * * *
267545 TTTCCAAAAATCCCATTTTTGACCTCGAAC
1 CTTCCAAAATTCCCA-TTTTAACCTCGAAA
* *
267575 CTTCCAAAATTACCATTTTACCCTCCG-AA
1 CTTCCAAAATTCCCATTTTAACCT-CGAAA
*
267604 CTTCCAAAAATCCCATTTTCAACCTCGAAA
1 CTTCCAAAATTCCCATTTT-AACCTCGAAA
*
267634 C-TCTCAAAATTGCCATTTT
1 CTTC-CAAAATTCCCATTTT
267653 TACCCTCAAA
Statistics
Matches: 264, Mismatches: 54, Indels: 45
0.73 0.15 0.12
Matches are distributed among these distances:
27 3 0.01
28 59 0.22
29 90 0.34
30 102 0.39
31 10 0.04
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (29 bp):
CTTCCAAAATTCCCATTTTAACCTCGAAA
Found at i:271733 original size:34 final size:34
Alignment explanation
Indices: 271695--271762 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
271685 CAATAAGTTA
271695 CCAACTTCTTTTTCTTTTCTCTCTCTCT-TTTTT
1 CCAACTTCTTTTTCTTTTCTCTCTCTCTCTTTTT
271728 NCCAACTTCTTTTTCTTTTCTCTCTCTCTCTTTTT
1 -CCAACTTCTTTTTCTTTTCTCTCTCTCTCTTTTT
271763 TTAGAATTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 28 0.85
35 5 0.15
ACGTcount: A:0.06, C:0.31, G:0.00, T:0.62
Consensus pattern (34 bp):
CCAACTTCTTTTTCTTTTCTCTCTCTCTCTTTTT
Found at i:273551 original size:26 final size:25
Alignment explanation
Indices: 273501--273560 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
273491 AAAAACTTTA
* **
273501 AAAATATTTTTAATTTTTTGTATTT
1 AAAATATTTATAATTTTTTAAATTT
*
273526 CAAAATATTTATGATTTTTTAAATTT
1 -AAAATATTTATAATTTTTTAAATTT
*
273552 AAACTATTT
1 AAAATATTT
273561 TTGTTTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 8 0.28
26 21 0.72
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (25 bp):
AAAATATTTATAATTTTTTAAATTT
Found at i:275992 original size:12 final size:13
Alignment explanation
Indices: 275972--276006 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
275962 TTTTAGATCA
*
275972 TTTTCATATTA-T
1 TTTTAATATTATT
275984 TTTTAATATTATT
1 TTTTAATATTATT
275997 TTTTAATATT
1 TTTTAATATT
276007 TAATATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTAATATTATT
Found at i:294642 original size:25 final size:25
Alignment explanation
Indices: 294610--294659 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
294600 ATGAAACTAG
*
294610 TTTTAAAGTAAAGCAAAATAATATT
1 TTTTAAAGTAAAACAAAATAATATT
*
294635 TTTTAAAGTAAAACAAAATATTATT
1 TTTTAAAGTAAAACAAAATAATATT
294660 ATAAAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (25 bp):
TTTTAAAGTAAAACAAAATAATATT
Found at i:305728 original size:59 final size:60
Alignment explanation
Indices: 305648--306114 Score: 398
Period size: 59 Copynumber: 7.9 Consensus size: 60
305638 GTCGGCTTAA
*
305648 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGACCGACACCCCCTTTTT
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACCCCCTTTTT
* * * * * * * * ** * *
305708 GTCAGATTAAAAATTCAATTTTTTTGGTATTGGCTATGCCATGGTCGA-AACCCCTATTT
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACCCCCTTTTT
* ***
305767 ATCTGGTAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGGTTGACACCCCCTTTTT
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACCCCCTTTTT
* * * * *
305827 GTCAGATAAAAAATTCGAA-TTTTTGGTGTTGACCATTGC-ATGACCGACACCCCCTTTTTT
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCA-TGCAATGACCGACACCCCC-TTTTT
* * ** *
305887 ATCTTG-TAAAAAAATTTAAATTTTTTTGTGTTATCCATTGC-ATGGCCGACA-CCCCTTTTT
1 ATC-TGATAAAAAAA-TCAAATTTTTTGGTGTTGGCCA-TGCAATGACCGACACCCCCTTTTT
* * * *
305947 ATCTGA-ATAAAAAATCAAA-TTTTGGGCGTTGGCCATACTATGACCGACACCCCC-TTTT
1 ATCTGATA-AAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACCCCCTTTTT
* * * ** * * * * * *
306005 GTCAGAT-AAAAATTTTAATTTTTTGGTGTTGGCTATGCCATGGCCGATA-TCCCTATTT
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACCCCCTTTTT
* **
306063 ATCTGATAAAAAAATCAAATTTTTTGGTATTGATCATGCAATGACCGACACC
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACC
306115 AATTTCTCTT
Statistics
Matches: 314, Mismatches: 78, Indels: 30
0.74 0.18 0.07
Matches are distributed among these distances:
57 13 0.04
58 59 0.19
59 117 0.37
60 91 0.29
61 8 0.03
62 26 0.08
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (60 bp):
ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGACCGACACCCCCTTTTT
Found at i:305881 original size:119 final size:118
Alignment explanation
Indices: 305648--306114 Score: 419
Period size: 119 Copynumber: 3.9 Consensus size: 118
305638 GTCGGCTTAA
* * *
305648 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGTCATGCAATGACCGACACCCCCTTTTTGTCAG
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGGCCGACA-CCCCTTTTTATCAG
* * * * * ** *
305713 ATTAAAAATTCAATTTTTTTGGTATTGGCTATGCCATGGTCGA-AACCCCTATTT
65 ATAAAAAATTCAAATTTTTTGGTATTGACCATGCAATGACCGACACCCCCT-TTT
* ** *
305767 ATCTGGTAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGGTTGACACCCCCTTTTTGTCAG
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGGCCGACA-CCCCTTTTTATCAG
* *
305832 ATAAAAAATTCGAA-TTTTTGGTGTTGACCATTGC-ATGACCGACACCCCCTTTTTT
65 ATAAAAAATTCAAATTTTTTGGTATTGACCA-TGCAATGACCGACACCCCC--TTTT
* * **
305887 ATCTTG-TAAAAAAATTTAAATTTTTTTGTGTTATCCATTGC-ATGGCCGACACCCCTTTTTATC
1 ATC-TGATAAAAAAA-TCAAATTTTTTGGTGTTGGCCA-TGCAATGGCCGACACCCCTTTTTATC
* * ** * * *
305950 TGAATAAAAAA-TCAAA-TTTTGGGCGTTGGCCATACTATGACCGACACCCCCTTTT
63 AG-ATAAAAAATTCAAATTTTTTGGTATTGACCATGCAATGACCGACACCCCCTTTT
* * * ** * * * * * *
306005 GTCAGAT-AAAAATTTTAATTTTTTGGTGTTGGCTATGCCATGGCCGATATCCCTATTTATCTGA
1 ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCTTTTTATCAGA
* *
306069 TAAAAAAATCAAATTTTTTGGTATTGATCATGCAATGACCGACACC
66 TAAAAAATTCAAATTTTTTGGTATTGACCATGCAATGACCGACACC
306115 AATTTCTCTT
Statistics
Matches: 290, Mismatches: 45, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
115 11 0.04
116 43 0.15
117 31 0.11
118 26 0.09
119 81 0.28
120 58 0.20
121 37 0.13
122 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (118 bp):
ATCTGATAAAAAAATCAAATTTTTTGGTGTTGGCCATGCAATGGCCGACACCCCTTTTTATCAGA
TAAAAAATTCAAATTTTTTGGTATTGACCATGCAATGACCGACACCCCCTTTT
Found at i:306321 original size:31 final size:31
Alignment explanation
Indices: 306278--306366 Score: 151
Period size: 31 Copynumber: 2.9 Consensus size: 31
306268 CAATCCAATT
*
306278 TCGGGGTTGAACTATATACTGTCATATATTG
1 TCGGAGTTGAACTATATACTGTCATATATTG
306309 TCGGAGTTGAACTATATACTGTCATATATTG
1 TCGGAGTTGAACTATATACTGTCATATATTG
* *
306340 TCGGAGTTGAATTATATATTGTCATAT
1 TCGGAGTTGAACTATATACTGTCATAT
306367 GAAGGGGCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.40
Consensus pattern (31 bp):
TCGGAGTTGAACTATATACTGTCATATATTG
Found at i:306895 original size:30 final size:30
Alignment explanation
Indices: 306861--306951 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
306851 ATTTCGAATT
*
306861 ATATACAGGAAATTAGAAATTAAAATTAAA
1 ATATACAGGAAATTAGAAATTAAATTTAAA
306891 ATATACAGGAAATTAGAAATTAAATTTAAA
1 ATATACAGGAAATTAGAAATTAAATTTAAA
* * * *
306921 ATAAAAACGAAATTACAAATTAAATTTAAA
1 ATATACAGGAAATTAGAAATTAAATTTAAA
306951 A
1 A
306952 AGTAAACGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.27
Consensus pattern (30 bp):
ATATACAGGAAATTAGAAATTAAATTTAAA
Found at i:308409 original size:60 final size:59
Alignment explanation
Indices: 308331--309139 Score: 345
Period size: 59 Copynumber: 13.6 Consensus size: 59
308321 ATCAGATAAA
* *
308331 CATGACCAACACCAAAAAAATTAAATTTTTTATT-TGACAAAAAAGGGGTGTCGGCCATGG
1 CATGGCCAACACCAAAAAAATT-AATTTTTTATTCAGA-AAAAAAGGGGTGTCGGCCATGG
* * * * * *
308391 CATTGCCAACACCCAAAAATTTGATTTTTTATTCAGATAAAAAGGGGTGTCGGCCATTG
1 CATGGCCAACACCAAAAAAATTAATTTTTTATTCAGAAAAAAAGGGGTGTCGGCCATGG
* * * * * **
308450 CATGGCCAACACAAAAAAAAATTAATTTTTTA-CCATATTAAAAAGGAAGTGTCGATCATGG
1 CATGGCCAACAC-CAAAAAAATTAATTTTTTATTCAGA-AAAAAAGG-GGTGTCGGCCATGG
* * * * * *
308511 CATGACCAACACAAATAAAAATTCGAATTTTTTA-TCTGATAAAAAGGATGTGTCGACCATGG
1 CATGGCCAACACCAA-AAAAATT--AATTTTTTATTCAGAAAAAAAGG-GGTGTCGGCCATGG
* * *** *
308573 CATGGTCAACACC----------CTTTTTTA-TCA-AATCAAATTTTTGGGTGTTGGCCAT-G
1 CATGGCCAACACCAAAAAAATTAATTTTTTATTCAGAA--AAA--AAGGGGTGTCGGCCATGG
** * * * * *
308623 CTATGATCAATACCAAAAAATTTTGAAATTTTTTA-TCTG-AAAAAAGGAGGTGTCGGCTAT-T
1 C-ATGGCCAACACCAAAAAA-ATT--AATTTTTTATTCAGAAAAAAAGG-GGTGTCGGCCATGG
* * * * * *
308684 CAATGGCCGACACCAAAAAAATTTAATTTTTT-TACCAGATAAATAGGGGTGTCGGCTATGA
1 C-ATGGCCAACACCAAAAAAA-TTAATTTTTTAT-TCAGAAAAAAAGGGGTGTCGGCCATGG
* * * *
308745 CATGGCCAATA-CAAAAAAATTTGAATTTTTTA-TCTG-ACAAAAGGGGATGTCGGTCATGG
1 CATGGCCAACACCAAAAAAA-TT-AATTTTTTATTCAGAAAAAAAGGGG-TGTCGGCCATGG
* * * * *
308804 CATGGACAACACTC-AAAAATTTGATTTTTTATTCAGATAAAAAGAGGTGTCGGCCAT-G
1 CATGGCCAACAC-CAAAAAAATTAATTTTTTATTCAGAAAAAAAGGGGTGTCGGCCATGG
* ** *
308862 CAATAGCCAACATAAAAAAAAATTGAAATTTTTTA--CAAGATAAAAAGGGAGTGTCGGCCAT-G
1 C-ATGGCCAACA-CCAAAAAAATT--AATTTTTTATTC-AGAAAAAAAGGG-GTGTCGGCCATGG
* * * * * * * * **
308924 CAATTGCCAAC-CC-CAATAATTCAAATTTTTAATCTGACAAAAAAGGAGTGTCGGCTATTA
1 C-ATGGCCAACACCAAAAAAATT-AATTTTTTATTCAGA-AAAAAAGGGGTGTCGGCCATGG
* *
308984 CATGGCCAACACCAAAAAAATTAATTTTTTA-CCAGATAAAAAAAAGAGGTGTCGGCCATGG
1 CATGGCCAACACCAAAAAAATTAATTTTTTATTCAG---AAAAAAAGGGGTGTCGGCCATGG
* * * * * *
309045 CATAGCTAACA--AAAAAAATTCAAATTTTTTA-TCTGACAAAAAGGGGGTGTCGACGATGG
1 CATGGCCAACACCAAAAAAATT--AATTTTTTATTCAGA-AAAAAAGGGGTGTCGGCCATGG
* * * *
309104 CATGGTCAACACCCAAAAATTTGATTTTTTATTCAG
1 CATGGCCAACACCAAAAAAATTAATTTTTTATTCAG
309140 GCCGACACAA
Statistics
Matches: 566, Mismatches: 122, Indels: 122
0.70 0.15 0.15
Matches are distributed among these distances:
48 1 0.00
49 9 0.02
50 5 0.01
51 19 0.03
52 1 0.00
58 26 0.05
59 176 0.31
60 119 0.21
61 124 0.22
62 65 0.11
63 11 0.02
64 10 0.02
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (59 bp):
CATGGCCAACACCAAAAAAATTAATTTTTTATTCAGAAAAAAAGGGGTGTCGGCCATGG
Found at i:308822 original size:119 final size:119
Alignment explanation
Indices: 308630--308927 Score: 283
Period size: 119 Copynumber: 2.5 Consensus size: 119
308620 ATGCTATGAT
* * * *
308630 CAATACCAAAAAATTTTGAAATTTTTTATCTGAAAAAAGGAGGTGTCGGCTATTCAATGGCCGAC
1 CAATA-CAAAAAAATTTGAAATTTTTTATCTGAAAAAAGGAGGTGTCGGCTATGCAATGGACAAC
* * * *
308695 ACCAAAAAAATTTAATTTTTT-TACCAGATAAATAGGGGTGTCGGCTATG-ACATGGC
65 ACC-AAAAAATTTAATTTTTTAT-CCAGATAAAAAGAGGTGTCGGCCATGCA-ATAGC
*
308751 CAATACAAAAAAATTTG-AATTTTTTATCTGACAAAAGG-GGATGTCGG-TCATGGC-ATGGACA
1 CAATACAAAAAAATTTGAAATTTTTTATCTGAAAAAAGGAGG-TGTCGGCT-AT-GCAATGGACA
* *
308812 ACACTC-AAAAATTTGATTTTTTATTCAGATAAAAAGAGGTGTCGGCCATGCAATAGC
63 ACAC-CAAAAAATTTAATTTTTTATCCAGATAAAAAGAGGTGTCGGCCATGCAATAGC
* * *
308869 CAACATA-AAAAAAAATTGAAATTTTTTA-CAAGATAAAAAGG-GAGTGTCGGCCATGCAAT
1 C-A-ATACAAAAAAATTTGAAATTTTTTATC-TGA-AAAAAGGAG-GTGTCGGCTATGCAAT
308928 TGCCAACCCC
Statistics
Matches: 148, Mismatches: 15, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
118 45 0.30
119 51 0.34
120 29 0.20
121 22 0.15
122 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (119 bp):
CAATACAAAAAAATTTGAAATTTTTTATCTGAAAAAAGGAGGTGTCGGCTATGCAATGGACAACA
CCAAAAAATTTAATTTTTTATCCAGATAAAAAGAGGTGTCGGCCATGCAATAGC
Found at i:309086 original size:61 final size:61
Alignment explanation
Indices: 308842--309086 Score: 186
Period size: 61 Copynumber: 4.0 Consensus size: 61
308832 TTATTCAGAT
* *
308842 AAAAAGAGGTGTCGGCCATGCAATAGCCAACATAAAAAAAAATTGAAATTTTTTA-C--A-AGAT
1 AAAAAGAGGTGTCGGCCATGCAATAGCCAAC---AAAAAAAATTCAAATTTTTTATCTGACA-AA
* * *** * *
308903 AAAAAGGGAGTGTCGGCCATGCAATTGCCAACCCCAATAATTCAAATTTTTAATCTGAC-AA
1 AAAAAGAG-GTGTCGGCCATGCAATAGCCAACAAAAAAAATTCAAATTTTTTATCTGACAAA
* * * * * * *
308964 AAAAGGA-GTGTCGGCTAT-TACATGGCCAACACCAAAAAAATT--AATTTTTTACCAGATAAA
1 AAAAAGAGGTGTCGGCCATGCA-ATAGCCAACA--AAAAAAATTCAAATTTTTTATCTGACAAA
*
309024 AAAAAGAGGTGTCGGCCATGGC-ATAGCTAACAAAAAAAATTCAAATTTTTTATCTGACAAA
1 AAAAAGAGGTGTCGGCCAT-GCAATAGCCAACAAAAAAAATTCAAATTTTTTATCTGACAAA
309085 AA
1 AA
309087 GGGGGTGTCG
Statistics
Matches: 140, Mismatches: 30, Indels: 28
0.71 0.15 0.14
Matches are distributed among these distances:
58 1 0.01
59 53 0.38
60 9 0.06
61 54 0.39
62 23 0.16
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (61 bp):
AAAAAGAGGTGTCGGCCATGCAATAGCCAACAAAAAAAATTCAAATTTTTTATCTGACAAA
Found at i:309305 original size:61 final size:60
Alignment explanation
Indices: 309141--309307 Score: 171
Period size: 60 Copynumber: 2.8 Consensus size: 60
309131 TTTATTCAGG
* * *
309141 CCGACA-CAAAAGAATTTG-ATTTTCTTTATCAGATAAATAGGGGTGTTGGCCATGGCATGA
1 CCGACACCAAAA-AATTTGAATTTTTTTTATCAAATAAA-AGGGGTGTCGGCCATGGCATGA
* * * * * *
309201 CCTACACCAAAAAAATTAAATTTTTTATT-TGATAA-AAAAGGGGTGTCGGCCATTGCATGG
1 CCGACACCAAAAAATTTGAATTTTTT-TTATCA-AATAAAAGGGGTGTCGGCCATGGCATGA
*
309261 TCGACACCAAAAAATTTGAATTTTTTTTATCAAATTAAAAGGGGTGT
1 CCGACACCAAAAAATTTGAATTTTTTTTATCAAA-TAAAAGGGGTGT
309308 AACACCAAAA
Statistics
Matches: 86, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
59 4 0.05
60 52 0.60
61 27 0.31
62 3 0.03
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (60 bp):
CCGACACCAAAAAATTTGAATTTTTTTTATCAAATAAAAGGGGTGTCGGCCATGGCATGA
Found at i:309345 original size:30 final size:30
Alignment explanation
Indices: 309309--309377 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
309299 AAGGGGTGTA
309309 ACACCAAAAAAATTTTTTTATACATGGTCG
1 ACACCAAAAAAATTTTTTTATACATGGTCG
***
309339 ACACCAAAATTTTTTTTTTATACATGGTCG
1 ACACCAAAAAAATTTTTTTATACATGGTCG
309369 ACACCAAAA
1 ACACCAAAA
309378 TTTTTTTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (30 bp):
ACACCAAAAAAATTTTTTTATACATGGTCG
Found at i:309378 original size:30 final size:30
Alignment explanation
Indices: 309321--309386 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
309311 ACCAAAAAAA
309321 TTTTTTTATACATGGTCGACACCAAAATTT
1 TTTTTTTATACATGGTCGACACCAAAATTT
309351 TTTTTTTATACATGGTCGACACCAAAATTT
1 TTTTTTTATACATGGTCGACACCAAAATTT
309381 TTTTTT
1 TTTTTT
309387 CAAATTATCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.48
Consensus pattern (30 bp):
TTTTTTTATACATGGTCGACACCAAAATTT
Found at i:311528 original size:19 final size:19
Alignment explanation
Indices: 311505--311556 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
311495 AAATTATATT
*
311505 ATTTAATATT-ATTTTAAA
1 ATTTTATATTAATTTTAAA
*
311523 ATTTTATTTTAATTTTAAA
1 ATTTTATATTAATTTTAAA
* *
311542 AATTAATATGTAATT
1 ATTTTATAT-TAATT
311557 AGATTTGAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 8 0.30
19 14 0.52
20 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTTTATATTAATTTTAAA
Found at i:313928 original size:11 final size:11
Alignment explanation
Indices: 313914--313938 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
313904 ATAAGATTAA
313914 ATTTTAATTCG
1 ATTTTAATTCG
313925 ATTTTAATTCG
1 ATTTTAATTCG
313936 ATT
1 ATT
313939 AGTAAAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (11 bp):
ATTTTAATTCG
Found at i:318210 original size:35 final size:35
Alignment explanation
Indices: 318161--318249 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 35
318151 TTAAATTTCG
* * * *
318161 ATTTTGATTCAATTATATATATATATAAAACTATA
1 ATTTTAATTCAATTATACATATATAAAAAACTAAA
* * *
318196 ATTTTAATTTAATTATACATATTTAAAAAATTAAA
1 ATTTTAATTCAATTATACATATATAAAAAACTAAA
*
318231 ATTTTCATATCATATTATA
1 ATTTTAAT-TCA-ATTATA
318250 TTTATATTCT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
35 35 0.81
36 2 0.05
37 6 0.14
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.47
Consensus pattern (35 bp):
ATTTTAATTCAATTATACATATATAAAAAACTAAA
Found at i:320263 original size:29 final size:30
Alignment explanation
Indices: 320231--320288 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
320221 AACTTTTTAT
*
320231 TTTCCCCCGAAACTTTTACTCT-CTCTCAC
1 TTTCCCCCAAAACTTTTACTCTCCTCTCAC
*
320260 TTTCCCCTAAAACTTTTACTCTCCTCTCA
1 TTTCCCCCAAAACTTTTACTCTCCTCTCA
320289 TCCCACCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.19, C:0.40, G:0.02, T:0.40
Consensus pattern (30 bp):
TTTCCCCCAAAACTTTTACTCTCCTCTCAC
Found at i:323001 original size:31 final size:31
Alignment explanation
Indices: 322913--323010 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
322903 AATTTATATT
* * * *
322913 TTATATATCATTATATTAAATTATTTAAATA
1 TTATTTATTATTATATTTAATTTTTTAAATA
* * *
322944 TCATTTATTATGATATTACTAA--TTTTAAATC
1 TTATTTATTATTATATT--TAATTTTTTAAATA
322975 TTATTTATTATTATATTTAATTTTTTAAA-A
1 TTATTTATTATTATATTTAATTTTTTAAATA
323005 TTATTT
1 TTATTT
323011 TATATATCAT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
29 3 0.06
30 6 0.11
31 42 0.79
33 2 0.04
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (31 bp):
TTATTTATTATTATATTTAATTTTTTAAATA
Found at i:325718 original size:21 final size:20
Alignment explanation
Indices: 325690--325733 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
325680 TTAAGAAGAT
*
325690 AGTGTTTTAATATGTTAAAA
1 AGTGTTTTAATATCTTAAAA
* *
325710 AGTGATTTTACTCTCTTAAAA
1 AGTG-TTTTAATATCTTAAAA
325731 AGT
1 AGT
325734 TAAATTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (20 bp):
AGTGTTTTAATATCTTAAAA
Found at i:327463 original size:41 final size:40
Alignment explanation
Indices: 327368--327466 Score: 96
Period size: 38 Copynumber: 2.5 Consensus size: 40
327358 AGCAATAAAG
* * *
327368 TGACACCCAGTGTCTCATC-AGCCTAGCCGAAGTAAAATGA
1 TGACA-CCAGTGTCTCATCGAACCTAGCCGAACTAAAATAA
** * *
327408 T-AC-CCAGTACCTCATCGAATCTATCCGAACTAAAATAA
1 TGACACCAGTGTCTCATCGAACCTAGCCGAACTAAAATAA
327446 TGACACCTAGTGTCTCATCGA
1 TGACACC-AGTGTCTCATCGA
327467 CTCAAGGTCG
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
37 11 0.24
38 17 0.37
39 4 0.09
40 3 0.07
41 11 0.24
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (40 bp):
TGACACCAGTGTCTCATCGAACCTAGCCGAACTAAAATAA
Found at i:328944 original size:167 final size:166
Alignment explanation
Indices: 328663--328993 Score: 619
Period size: 167 Copynumber: 2.0 Consensus size: 166
328653 AAAACACTTA
328663 TATTCACATTAAAATCATTCAAACATATCATAATCTATGTTTCTAAACCAAAAACTAATGTACTT
1 TATTCACATTAAAATCATTCAAACATATCATAATCTATGTTTCTAAACCAAAAACTAATGTACTT
328728 AAAGAGGAGTTTAGCTTTCTTACCTTAATCACTTGTATTCAACACTAATTCCCATTTTCTTTCTC
66 AAAGAGGAGTTTAGCTTTCTTACCTTAATCACTTGTATTCAACACTAATTCCCATTTTCTTTCTC
328793 CTCCAAGACAAGTATGGATGCATTTCTTTTAACATG
131 CTCCAAGACAAGTATGGATGCATTTCTTTTAACATG
* *
328829 TATTCACATTAAAATCATTCTAACATATCATAATCTATGTTTCTAAACC-AAAACTAACATGTAT
1 TATTCACATTAAAATCATTCAAACATATCATAATCTATGTTTCTAAACCAAAAACT-A-ATGTAC
328893 TTAAAGAGGAGTTTAGCTTTCTTACCTTAATCACTTGTATTCAACACTAATTCCCATTTTCTTTC
64 TTAAAGAGGAGTTTAGCTTTCTTACCTTAATCACTTGTATTCAACACTAATTCCCATTTTCTTTC
328958 TCCTCCAAGACAAGTATGGATGCATTTCTTTTAACA
129 TCCTCCAAGACAAGTATGGATGCATTTCTTTTAACA
328994 ATTGGATAGC
Statistics
Matches: 161, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
165 6 0.04
166 49 0.30
167 106 0.66
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.38
Consensus pattern (166 bp):
TATTCACATTAAAATCATTCAAACATATCATAATCTATGTTTCTAAACCAAAAACTAATGTACTT
AAAGAGGAGTTTAGCTTTCTTACCTTAATCACTTGTATTCAACACTAATTCCCATTTTCTTTCTC
CTCCAAGACAAGTATGGATGCATTTCTTTTAACATG
Found at i:330532 original size:27 final size:26
Alignment explanation
Indices: 330496--330546 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
330486 TTTCATGCTA
330496 ATTTTAAAAT-TTTTATGAATATTTTTT
1 ATTTTAAAATATTTTAT-AAT-TTTTTT
*
330523 ATTTTTAAATATTTTATAATTTTT
1 ATTTTAAAATATTTTATAATTTTT
330547 AAATTATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 4 0.18
27 12 0.55
28 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (26 bp):
ATTTTAAAATATTTTATAATTTTTTT
Found at i:330544 original size:18 final size:18
Alignment explanation
Indices: 330496--330550 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
330486 TTTCATGCTA
*
330496 ATTTTAAAATTTTTATGAAT
1 ATTTTATAATTTTTA--AAT
*
330516 ATTTT-TTATTTTTAAAT
1 ATTTTATAATTTTTAAAT
330533 ATTTTATAATTTTTAAAT
1 ATTTTATAATTTTTAAAT
330551 TATATTTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 8 0.26
18 11 0.35
19 7 0.23
20 5 0.16
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTTATAATTTTTAAAT
Found at i:331133 original size:29 final size:30
Alignment explanation
Indices: 331088--331149 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
331078 TTTTTTTTTT
*
331088 TTTTTTGTAATTGTATACATG-AACTTTGA
1 TTTTGTGTAATTGTATACATGAAACTTTGA
* * *
331117 TTTTGTGTAATTTTATATATGAAATTTTGA
1 TTTTGTGTAATTGTATACATGAAACTTTGA
331147 TTT
1 TTT
331150 GATCTAATTC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.56
Consensus pattern (30 bp):
TTTTGTGTAATTGTATACATGAAACTTTGA
Found at i:331359 original size:29 final size:31
Alignment explanation
Indices: 331299--331360 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 31
331289 ATAGATTTGA
* * *
331299 ACCACAATTAAAATTTCATGTGTATAATTGC
1 ACCACAATTAAAATTTCATGTATACAACTGC
*
331330 ACCA-AATTAAAGTTT-ATGTATACAACTGC
1 ACCACAATTAAAATTTCATGTATACAACTGC
331359 AC
1 AC
331361 AGTAGATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 13 0.48
30 10 0.37
31 4 0.15
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (31 bp):
ACCACAATTAAAATTTCATGTATACAACTGC
Found at i:334270 original size:15 final size:15
Alignment explanation
Indices: 334250--334280 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
334240 CTTAACCCTA
334250 AATATTAATATAATT
1 AATATTAATATAATT
334265 AATATTAATATAATT
1 AATATTAATATAATT
334280 A
1 A
334281 TTTTATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATATTAATATAATT
Found at i:334312 original size:24 final size:24
Alignment explanation
Indices: 334255--334319 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
334245 CCCTAAATAT
*
334255 TAATATAA-TTAATATTAATATAA
1 TAATTTAATTTAATATTAATATAA
* *
334278 TTATTTTATTTAATATTAATATAA
1 TAATTTAATTTAATATTAATATAA
*
334302 -AATTTAAATTTACTATTA
1 TAATTT-AATTTAATATTA
334320 TCATTATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 9 0.26
24 25 0.74
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TAATTTAATTTAATATTAATATAA
Found at i:336989 original size:12 final size:12
Alignment explanation
Indices: 336972--336998 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
336962 ATCCTAAAAA
336972 AGACTAAGAACC
1 AGACTAAGAACC
336984 AGACTAAGAACC
1 AGACTAAGAACC
336996 AGA
1 AGA
336999 AGGCAACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.22, G:0.19, T:0.07
Consensus pattern (12 bp):
AGACTAAGAACC
Found at i:347522 original size:26 final size:26
Alignment explanation
Indices: 347489--347547 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
347479 TTATTGTTAA
347489 TTTTGTTATTATTTTAGAGGCATTTG
1 TTTTGTTATTATTTTAGAGGCATTTG
**
347515 TTTTGTTATTATTTTAGAGTTATTTG
1 TTTTGTTATTATTTTAGAGGCATTTG
347541 -TTTGTTA
1 TTTTGTTA
347548 AGTTGCATCT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.19, C:0.02, G:0.17, T:0.63
Consensus pattern (26 bp):
TTTTGTTATTATTTTAGAGGCATTTG
Found at i:355289 original size:23 final size:23
Alignment explanation
Indices: 355191--355316 Score: 109
Period size: 23 Copynumber: 5.5 Consensus size: 23
355181 AAGTGTTGGG
*
355191 GAAACAGTAAGCACACACAGTGC
1 GAAACAGTAAGCACACAAAGTGC
*
355214 -AATCCAGTAGAAGCACAC--AGTGC
1 GAA-ACAGT--AAGCACACAAAGTGC
* * * * *
355237 -AATCAGTAGGCGCACATAGCGC
1 GAAACAGTAAGCACACAAAGTGC
*
355259 -AAATCAGTAAGCACACGAAGTGC
1 GAAA-CAGTAAGCACACAAAGTGC
355282 GAAACAGTAAGCACACAAAGTGC
1 GAAACAGTAAGCACACAAAGTGC
355305 GAAACAGTAAGC
1 GAAACAGTAAGC
355317 GCGCTAGCGT
Statistics
Matches: 84, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
20 6 0.07
22 12 0.14
23 55 0.65
24 3 0.04
25 8 0.10
ACGTcount: A:0.42, C:0.24, G:0.23, T:0.11
Consensus pattern (23 bp):
GAAACAGTAAGCACACAAAGTGC
Found at i:358743 original size:23 final size:23
Alignment explanation
Indices: 358709--358855 Score: 133
Period size: 23 Copynumber: 6.3 Consensus size: 23
358699 CCAGTAGCAC
*
358709 GCTCTCTATTCAGCACTGT-GTGT
1 GCTCTCTGTTCAGCACT-TCGTGT
*
358732 GCTCTCTGTTCAGCA-TTGTGTGT
1 GCTCTCTGTTCAGCACTT-CGTGT
* *
358755 GCTCTCTATTCAGCATTTCGTGT
1 GCTCTCTGTTCAGCACTTCGTGT
* *
358778 GCTCTTTGATT-AGCATTTCGTGT
1 GCTCTCTG-TTCAGCACTTCGTGT
358801 GCTCTCTGATT-AGCACTTCGTGT
1 GCTCTCTG-TTCAGCACTTCGTGT
*
358824 GCTCTCTGTTACCCAGCACTT-ATGT
1 GCTCTCTGTT---CAGCACTTCGTGT
358849 GCTCTCT
1 GCTCTCT
358856 ATTTAGTACT
Statistics
Matches: 108, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.01
22 3 0.03
23 83 0.77
24 4 0.04
25 10 0.09
26 7 0.06
ACGTcount: A:0.12, C:0.26, G:0.20, T:0.41
Consensus pattern (23 bp):
GCTCTCTGTTCAGCACTTCGTGT
Found at i:358778 original size:46 final size:45
Alignment explanation
Indices: 358709--358834 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 45
358699 CCAGTAGCAC
*
358709 GCTCTCTATTCAGCACTGT-GTGTGCTCTCTGTTCAGCATTGT-GTGT
1 GCTCTCTATTCAGCA-TTTCGTGTGCTCTCTGTT-AGCATT-TCGTGT
*
358755 GCTCTCTATTCAGCATTTCGTGTGCTCTTTGATTAGCATTTCGTGT
1 GCTCTCTATTCAGCATTTCGTGTGCTCTCTG-TTAGCATTTCGTGT
*
358801 GCTCTCTGATT-AGCACTTCGTGTGCTCTCTGTTA
1 GCTCTCT-ATTCAGCATTTCGTGTGCTCTCTGTTA
358835 CCCAGCACTT
Statistics
Matches: 72, Mismatches: 4, Indels: 9
0.85 0.05 0.11
Matches are distributed among these distances:
45 6 0.08
46 61 0.85
47 5 0.07
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (45 bp):
GCTCTCTATTCAGCATTTCGTGTGCTCTCTGTTAGCATTTCGTGT
Found at i:359702 original size:19 final size:20
Alignment explanation
Indices: 359678--359715 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
359668 TTGTATTTTA
359678 TGAAAAA-TATCGATACCTT
1 TGAAAAAGTATCGATACCTT
359697 TGAAAAAGTATCGATACCT
1 TGAAAAAGTATCGATACCT
359716 GAATTCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (20 bp):
TGAAAAAGTATCGATACCTT
Found at i:363608 original size:17 final size:17
Alignment explanation
Indices: 363588--363621 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
363578 TTAATCTTTC
*
363588 AAATTATTAAAAAAATA
1 AAATTATGAAAAAAATA
*
363605 AAATTATGAACAAAATA
1 AAATTATGAAAAAAATA
363622 TTTGTCTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
AAATTATGAAAAAAATA
Found at i:375090 original size:422 final size:431
Alignment explanation
Indices: 374137--376120 Score: 1422
Period size: 442 Copynumber: 4.6 Consensus size: 431
374127 GACTACTTAT
** *
374137 GAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTC-AG--ATAACTTTAGAC-T-GCTACTGGGC
1 GAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAACACATAG-TACTGGGC
* * * * * * * *
374197 AACGATGGATTCCATCAAGGGATGGTTAATAGATAGGA-TGGAAACCCAAACTACCTACTCCTTC
65 AACGATGGACTCCTTCAAGGGATGGCTAACAGATA-GATTGGAAACCCAAACCATCAACTACTTC
* * * *
374261 CCTATCTTTTATTTTCCAGACATGTAACAGTCACTACCATCAAATCTAAGGTAGACACCTGACTA
129 CCTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATCAAAGGTAGACACCTGACTA
* * ** * * * * *
374326 CGTCTGGTTAGACTCATGGGA--CAAACAACTAACTATT-CCTAGT--TTC-CAGATAAA-GACC
194 CGTCTGGTTAGACTCATGGAACCCAAACAACTAAATATTAAATAATAGTTCATAGACAAACAACT
* * * ** * * *
374384 AAAAATGCATTTATATTCAAAAGATACAAAAGCACAG-AAAGTATTTCCAAATGCATATGTTTAA
259 AAAAATGC------A-TCAATAG-TA-AAAA-TA-AGTTAAGTATTAACAAACGCACAT-ATTAA
* * * * ** * * * * *
374448 GTGTTATTATCATTTGCTTCACTGCCCCTTTAGAAAACAAACAGATTCACAAGACGTGATCCACT
312 ATGTTACTATAATTTGTTTCACTATCCCTTTAAAAAAC-AAC-GATTCACAACATGCGATCAACT
* * **** * * * * *
374513 ATATCCAAAATAAGGATGGCCTTCATGGTTGGATGTATAGATTGAATTC-T-GATAGA
375 ATATCCAAAATAAGAATGACCTTCATACAAGAAGGAATAGATTGACTACATAGATA-A
* * * * *
374569 AAGTTGTTTCGAGAGATGTAGTGTCCAGAAGTAGCT--TG-AGTAACTAAACACATAGTACTGGG
1 GAGGTG-TT-GAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAACACATAGTACTGGG
* * *
374631 CAACGATGGACTCCATCAAGGGATGGCTAACAGATAGATTGGAAACCCAAACCATCAACAACTTT
64 CAACGATGGACTCCTTCAAGGGATGGCTAACAGATAGATTGGAAACCCAAACCATCAACTACTTC
*
374696 CCTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATTCCAAGGTAGACACCTGACT
129 CCTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATA-TCAAAGGTAGACACCTGACT
** * *
374761 ACGTCTGGTTAGACTCATGGAACATAAAACAACTAAATATTAAATTATAGTTCATAGACAAACAC
193 ACGTCTGGTTAGACTCATGGAAC-CCAAACAACTAAATATTAAATAATAGTTCATAGACAAACAA
* **
374826 CTAAAAATGCATCAATAGT-AAAATAAGTTAA-TA-TAAGAAGTG-AGCAT-TTAAATGTTACTA
257 CTAAAAATGCATCAATAGTAAAAATAAGTTAAGTATTAACAAACGCA-CATATTAAATGTTACTA
* * * * **
374886 TCATTTGATTT-ACTATCTC-TTAAGAAAC-A-GATTCATAGGAGTG-G-TCAAC-ATATCCAAA
321 TAATTTG-TTTCACTATCCCTTTAAAAAACAACGATTCACAACA-TGCGATCAACTATATCCAAA
* * *
374944 ATAAGAATCG-CC-TCATACAAGAATGCATA-AGTTGACTAC-TGGAGT-A
384 ATAAGAAT-GACCTTCATACAAGAAGGAATAGA-TTGACTACATAGA-TAA
** * *
374990 GATTTGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAATAAATAGTACTGGGCA
1 GAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAACACATAGTACTGGGCA
* * * * *
375055 ACGATGGACTCTTTCAATGGATGGCTAATAGATAGATTGGAAACCCAAACTATCAACTCCTTCCC
66 ACGATGGACTCCTTCAAGGGATGGCTAACAGATAGATTGGAAACCCAAACCATCAACTACTTCCC
* * * * *
375120 TATCTTTCATTTTCCAGACATGTAACAGTCCCTACCATCAAATCTAAGGCAGACACCTGACTACG
131 TATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATCAAAGGTAGACACCTGACTACG
* * * * * * * *
375185 TCTGGTTGGACTCATGGGACCCAAACAAC-AATATATAAAATAATAGTTTACAGATATACAACAA
196 TCTGGTTAGACTCATGGAACCCAAACAACTAA-ATATTAAATAATAGTTCATAGACAAACAACTA
* * * * ** * *
375249 AATGCATATGTATTCAAAAGATAAAGAAGCACAG-GAAGTATTTCCAAACGCATATATTAAGTGT
260 AA---A-ATGCA-TCAATAG-TAAA-AA-TA-AGTTAAGTATTAACAAACGCACATATTAAATGT
* * *
375313 TATTATAATTTGTTTCAGTATCCCTTTAAAAAACAAACTGATTCACAACATGCGATCCACTATAT
316 TACTATAATTTGTTTCACTATCCCTTTAAAAAAC-AAC-GATTCACAACATGCGATCAACTATAT
* ** * * *
375378 CCAAAATAAGGATGACCTTCATACTTGAAGGAATAGATTGGCTGCATATATAAA
379 CCAAAATAAGAATGACCTTCATACAAGAAGGAATAGATTGACTACATAGAT-AA
* *
375432 GAGGTGTTGAGAGATGTAATGTCCAGATGTAGCTCAAGTAATAAC-AGAACACATAGTACTGAGC
1 GAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTA-AACACATAGTACTGGGC
* * * *
375496 AAGGATGGACTCCTTCAAGGGATGTCTAACAGATAGAATAGAAACCCAAACCATCAACTACTTCC
65 AACGATGGACTCCTTCAAGGGATGGCTAACAGATAGATTGGAAACCCAAACCATCAACTACTTCC
* *
375561 CTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAACCATATCAAAGGTAGACACCTGACTAT
130 CTATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATCAAAGGTAGACACCTGACTAC
* * * * * *
375626 GTCTGGTTAGAATCATGGAACGCAAATAACTAAATATTAAATAACAGCTCATAGACAAACATCTA
195 GTCTGGTTAGACTCATGGAACCCAAACAACTAAATATTAAATAATAGTTCATAGACAAACAACTA
* * * * *
375691 AAAATGCATCAATATTCAAAATAAGTTGCTTTAAGAATAGAGTAACTAAATATCGCTGCTGTTTT
260 AAAATGCATCAATAGTAAAAATAA---G--TTAAG--T--ATTAAC--AA-A-CGC-AC----AT
** * ** * * *
375756 ATCCCCTAAACCAAATCACTACCATTTGCTTT-ACTATCTC-TTAGAAGAAC-A-GATTCACAGC
307 AT----T-AA--ATGTTACTATAATTTG-TTTCACTATCCCTTTA-AAAAACAACGATTCACAAC
* * * * * *
375817 AGTG-G-TCCA-TATATCCAAAAAAAGAA-CAGCC-TCATACTAGAATGCATAGATTGACTAC-T
363 A-TGCGATCAACTATATCCAAAATAAGAATGA-CCTTCATACAAGAAGGAATAGATTGACTACAT
*
375876 AAAGT-A
426 AGA-TAA
* * * *
375882 GAGTTGTTGAGAGATGTAGTGCCCAGATGTAGCTCAAGTAATAACCAAACAAATAGTACTGGGCA
1 GAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAACACATAGTACTGGGCA
* * * * * * * ** * *
375947 ACGATGGATTCCTTCAAGGGATAGCTAATACATGGATAGGAAACCCAGACCATTGATTCCTTCCC
66 ACGATGGACTCCTTCAAGGGATGGCTAACAGATAGATTGGAAACCCAAACCATCAACTACTTCCC
* * *
376012 TATCTTTTATTTTCCAGACATGTAACAATCTCTACCATCATATCAAAGGTAGACACCTGACTACG
131 TATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATCAAAGGTAGACACCTGACTACG
** *
376077 TCTGGTTAGACTCATGGAATGCAAACAATTAAATATTAAATAAT
196 TCTGGTTAGACTCATGGAACCCAAACAACTAAATATTAAATAAT
376121 TATAAAATTT
Statistics
Matches: 1241, Mismatches: 221, Indels: 162
0.76 0.14 0.10
Matches are distributed among these distances:
419 27 0.02
420 36 0.03
421 63 0.05
422 139 0.11
423 7 0.01
424 14 0.01
425 7 0.01
426 2 0.00
427 2 0.00
428 9 0.01
429 26 0.02
430 7 0.01
431 16 0.01
432 32 0.03
433 15 0.01
434 40 0.03
435 105 0.08
436 48 0.04
437 20 0.02
438 10 0.01
439 36 0.03
440 22 0.02
441 5 0.00
442 224 0.18
443 11 0.01
444 9 0.01
445 2 0.00
446 1 0.00
447 3 0.00
450 208 0.17
451 4 0.00
452 27 0.02
453 17 0.01
454 4 0.00
455 11 0.01
456 3 0.00
457 3 0.00
458 3 0.00
459 20 0.02
460 3 0.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (431 bp):
GAGGTGTTGAGAGATGTAGTGTCCAGATGTAGCTCAAGTAATAACTAAACACATAGTACTGGGCA
ACGATGGACTCCTTCAAGGGATGGCTAACAGATAGATTGGAAACCCAAACCATCAACTACTTCCC
TATCTTTTATTTTCCAGACATGTAACAGTCCCTACAATCATATCAAAGGTAGACACCTGACTACG
TCTGGTTAGACTCATGGAACCCAAACAACTAAATATTAAATAATAGTTCATAGACAAACAACTAA
AAATGCATCAATAGTAAAAATAAGTTAAGTATTAACAAACGCACATATTAAATGTTACTATAATT
TGTTTCACTATCCCTTTAAAAAACAACGATTCACAACATGCGATCAACTATATCCAAAATAAGAA
TGACCTTCATACAAGAAGGAATAGATTGACTACATAGATAA
Found at i:377309 original size:13 final size:13
Alignment explanation
Indices: 377291--377363 Score: 53
Period size: 13 Copynumber: 5.4 Consensus size: 13
377281 CAAAATACTT
377291 TTATTTATATTAA
1 TTATTTATATTAA
377304 TTATTTATATTTCAA
1 TTATTTATA-TT-AA
*
377319 TT-TTTAGATTAA
1 TTATTTATATTAA
*
377331 TTTATATTTTATGT-A
1 -TTAT-TTATAT-TAA
377346 TTA-TTATATTAAA
1 TTATTTATATT-AA
377359 TTATT
1 TTATT
377364 GAAATATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 17
0.69 0.06 0.25
Matches are distributed among these distances:
11 1 0.02
12 7 0.15
13 17 0.36
14 12 0.26
15 9 0.19
16 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (13 bp):
TTATTTATATTAA
Found at i:377386 original size:31 final size:33
Alignment explanation
Indices: 377334--377394 Score: 99
Period size: 31 Copynumber: 1.9 Consensus size: 33
377324 AGATTAATTT
*
377334 ATATTTTATGTATTATTATATTAAATTATTGAA
1 ATATTTTATGTATCATTATATTAAATTATTGAA
377367 ATATTTTAT-T-TCATTATATTAAATTATT
1 ATATTTTATGTATCATTATATTAAATTATT
377395 TTATTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 17 0.63
32 1 0.04
33 9 0.33
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (33 bp):
ATATTTTATGTATCATTATATTAAATTATTGAA
Found at i:377403 original size:31 final size:31
Alignment explanation
Indices: 377303--377406 Score: 97
Period size: 31 Copynumber: 3.3 Consensus size: 31
377293 ATTTATATTA
* *
377303 ATTATTTATATTTCAATT-T-TTAGATTAATTT
1 ATTATTT-TATTTC-ATTATATTAAATTATTTT
* **
377334 A-TATTTTATGTATTATTATATTAAATTATTGA
1 ATTATTTTAT-T-TCATTATATTAAATTATTTT
*
377366 AATATTTTATTTCATTATATTAAATTATTTT
1 ATTATTTTATTTCATTATATTAAATTATTTT
377397 ATTATTTTAT
1 ATTATTTTAT
377407 CCAAAACTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
29 3 0.05
30 9 0.15
31 29 0.49
32 10 0.17
33 8 0.14
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (31 bp):
ATTATTTTATTTCATTATATTAAATTATTTT
Found at i:380637 original size:144 final size:142
Alignment explanation
Indices: 380357--380648 Score: 476
Period size: 144 Copynumber: 2.0 Consensus size: 142
380347 TGAATGTGAG
*
380357 TAGTTTGATTTTAGAATGAATTTATAGTTTGAAAATTTTGGATTGACGACAATATTTTTGGTTGG
1 TAGTTTGATTTTAGAATGAATTTATAGTTTGAAAATTTTGGATTGACGACAATATTTTTGGTTGA
* *
380422 TTATTCAGGCTGAGGTAATTTGATTGGATTCAGCACATTTCAAGTTCATTTATTCATGGTACAAT
66 TAATTCAGGCTGAGGTAATTTGATTGGATTCAACACATTTCAAGTTCATTTATTCATGGTACAA-
380487 TTTTTTTCGAGTAA
130 -TTTTTTCGAGTAA
*
380501 TAGTTTGATTTTAGAATGAATTTATAGTTTGAAAATTTTGGATTGACGATAATATTTTTGGTTGA
1 TAGTTTGATTTTAGAATGAATTTATAGTTTGAAAATTTTGGATTGACGACAATATTTTTGGTTGA
*
380566 TAATTCAGGCTGGGGTAATTTGATTGGATTCAACACATTTCAAGTTGTTCATTTATTCATGGTAC
66 TAATTCAGGCTGAGGTAATTTGATTGGATTCAACACATTTCAA---GTTCATTTATTCATGGTAC
380631 AATTTTTTTTCGAGTAA
128 AA--TTTTTTCGAGTAA
380648 T
1 T
380649 CTCAATATAA
Statistics
Matches: 140, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
144 103 0.74
147 37 0.26
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (142 bp):
TAGTTTGATTTTAGAATGAATTTATAGTTTGAAAATTTTGGATTGACGACAATATTTTTGGTTGA
TAATTCAGGCTGAGGTAATTTGATTGGATTCAACACATTTCAAGTTCATTTATTCATGGTACAAT
TTTTTCGAGTAA
Found at i:383249 original size:23 final size:22
Alignment explanation
Indices: 383150--383278 Score: 109
Period size: 23 Copynumber: 5.5 Consensus size: 22
383140 CGAAGTACTT
383150 AACAGTAAGCACACAAGTGCTGGGGA
1 AACAGTAAGCACACAAGTGC----GA
383176 AACAGTAAGCACACACAGTGC-A
1 AACAGTAAGCACACA-AGTGCGA
* * * *
383198 ATCAGTAGGCGCACATAGCGC-A
1 AACAGTAAGCACACA-AGTGCGA
*
383220 AATCAGTAGGCACACAAGGTGCGA
1 AA-CAGTAAGCACACAA-GTGCGA
*
383244 AACAGTAAGTACACAAAGTGCGA
1 AACAGTAAGCACAC-AAGTGCGA
383267 AACAGTAAGCAC
1 AACAGTAAGCAC
383279 GCTAACGTTC
Statistics
Matches: 87, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
22 20 0.23
23 42 0.48
24 5 0.06
26 15 0.17
27 5 0.06
ACGTcount: A:0.41, C:0.22, G:0.25, T:0.12
Consensus pattern (22 bp):
AACAGTAAGCACACAAGTGCGA
Found at i:388367 original size:29 final size:29
Alignment explanation
Indices: 388325--388382 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
388315 TTTTTCTCTT
*
388325 TTATCATCCAGAGCTGAGAGCTCGAAAAA
1 TTATCATACAGAGCTGAGAGCTCGAAAAA
*
388354 TTATCATACAGAGCTGAGAGCTGGAAAAA
1 TTATCATACAGAGCTGAGAGCTCGAAAAA
388383 ACTTACTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (29 bp):
TTATCATACAGAGCTGAGAGCTCGAAAAA
Found at i:388844 original size:60 final size:61
Alignment explanation
Indices: 388771--388890 Score: 170
Period size: 61 Copynumber: 2.0 Consensus size: 61
388761 TTTAATTGTA
* ** * *
388771 AGGATCAAATAATTTAGTT-TTTTGATATTAACTTTTTGTTACTAAAAATTTTATCACTTG
1 AGGATCAAATAATTTAGTTCCTGCGATATCAACTTTTGGTTACTAAAAATTTTATCACTTG
* *
388831 AGGATCAAATAATTTAGTTCCTGCGCTATCAACTTTTGGTTACTAAAAATTTTGTCACTT
1 AGGATCAAATAATTTAGTTCCTGCGATATCAACTTTTGGTTACTAAAAATTTTATCACTT
388891 AACTGAGTGA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
60 19 0.37
61 33 0.63
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (61 bp):
AGGATCAAATAATTTAGTTCCTGCGATATCAACTTTTGGTTACTAAAAATTTTATCACTTG
Found at i:399151 original size:29 final size:29
Alignment explanation
Indices: 399097--399177 Score: 92
Period size: 31 Copynumber: 2.7 Consensus size: 29
399087 ATCTCAAAAC
* *
399097 TATACATGAATTATGGTTTAATGTGCAAT-T
1 TATACATGAATTTTGATTT--TGTGCAATCT
399127 ATATACATGAATTTTGATTTTGTGCAATCT
1 -TATACATGAATTTTGATTTTGTGCAATCT
*
399157 TATACATAAAATTTTGATTTT
1 TATACAT-GAATTTTGATTTT
399178 ATCAATTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
29 15 0.33
30 13 0.29
31 17 0.38
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.47
Consensus pattern (29 bp):
TATACATGAATTTTGATTTTGTGCAATCT
Found at i:399172 original size:30 final size:29
Alignment explanation
Indices: 399118--399177 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 29
399108 TATGGTTTAA
*
399118 TGTGCAATTATATACATGAATTTTGATTT
1 TGTGCAATTATATACATAAATTTTGATTT
399147 TGTGCAATCT-TATACATAAAATTTTGATTT
1 TGTGCAAT-TATATACAT-AAATTTTGATTT
399177 T
1 T
399178 ATCAATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 15 0.54
30 13 0.46
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (29 bp):
TGTGCAATTATATACATAAATTTTGATTT
Found at i:399626 original size:20 final size:20
Alignment explanation
Indices: 399603--399640 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
399593 TATTTCCTAA
399603 ATAATTAAACAAAATTATAC
1 ATAATTAAACAAAATTATAC
*
399623 ATAATTAAAGAAAATTAT
1 ATAATTAAACAAAATTAT
399641 TTAACATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (20 bp):
ATAATTAAACAAAATTATAC
Found at i:404611 original size:24 final size:26
Alignment explanation
Indices: 404572--404619 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
404562 AAATAAGTGT
404572 ACATAAAAAAATTAATAATTTAAACA
1 ACATAAAAAAATTAATAATTTAAACA
*
404598 ACAT-AAAAAA-TAATTATTTAAA
1 ACATAAAAAAATTAATAATTTAAA
404620 ATCAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
25 6 0.29
26 4 0.19
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (26 bp):
ACATAAAAAAATTAATAATTTAAACA
Found at i:405269 original size:15 final size:15
Alignment explanation
Indices: 405251--405310 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
405241 AAAGTATTTG
405251 AAATATTTTAATATA
1 AAATATTTTAATATA
* *
405266 AAATATCTT-ATTTCA
1 AAATATTTTAATAT-A
*
405281 AAATATAATTTAAAATA
1 AAATAT--TTTAATATA
*
405298 CAATATTTTAATA
1 AAATATTTTAATA
405311 ACATTAAATG
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
14 3 0.09
15 21 0.62
17 8 0.24
18 2 0.06
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATATTTTAATATA
Found at i:406694 original size:30 final size:30
Alignment explanation
Indices: 406658--406716 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
406648 TCGGGTTATA
*
406658 GTGATTGGTGATGATGGACTTGTTGTTGAC
1 GTGATTGGTGATGATGGACTTCTTGTTGAC
406688 GTGATTGGTGATGATGGACTTCTTGTTGA
1 GTGATTGGTGATGATGGACTTCTTGTTGA
406717 TGTTAACTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.07, G:0.36, T:0.41
Consensus pattern (30 bp):
GTGATTGGTGATGATGGACTTCTTGTTGAC
Found at i:409958 original size:50 final size:50
Alignment explanation
Indices: 409901--410005 Score: 210
Period size: 50 Copynumber: 2.1 Consensus size: 50
409891 GGCTGTAATA
409901 AGAGAAGATGTTGGTGTGCAAGGGAGGGCAAAGGAACGTTGAGAGAGAAT
1 AGAGAAGATGTTGGTGTGCAAGGGAGGGCAAAGGAACGTTGAGAGAGAAT
409951 AGAGAAGATGTTGGTGTGCAAGGGAGGGCAAAGGAACGTTGAGAGAGAAT
1 AGAGAAGATGTTGGTGTGCAAGGGAGGGCAAAGGAACGTTGAGAGAGAAT
410001 AGAGA
1 AGAGA
410006 TAAGAAAATG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.37, C:0.06, G:0.42, T:0.15
Consensus pattern (50 bp):
AGAGAAGATGTTGGTGTGCAAGGGAGGGCAAAGGAACGTTGAGAGAGAAT
Found at i:412996 original size:23 final size:24
Alignment explanation
Indices: 412931--413014 Score: 73
Period size: 23 Copynumber: 3.5 Consensus size: 24
412921 TTTAATGTTC
* *
412931 ACGAACATGTTCATTTAACTTAATCAA
1 ACGAACATGTTCA-TGAACAT-AT-AA
* *
412958 AC-ATCATATTCATGAACAT-TAA
1 ACGAACATGTTCATGAACATATAA
412980 ACGAACATGTTCATGAACATATAA
1 ACGAACATGTTCATGAACATATAA
**
413004 TTGAACATGTT
1 ACGAACATGTT
413015 TACGAACAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
22 4 0.09
23 16 0.34
24 12 0.26
25 5 0.11
26 8 0.17
27 2 0.04
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.32
Consensus pattern (24 bp):
ACGAACATGTTCATGAACATATAA
Found at i:413014 original size:24 final size:23
Alignment explanation
Indices: 412966--413014 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
412956 AAACATCATA
412966 TTCATGAACATTAAACGAACATG
1 TTCATGAACATTAAACGAACATG
**
412989 TTCATGAACATATAATTGAACATG
1 TTCATGAACAT-TAAACGAACATG
413013 TT
1 TT
413015 TACGAACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (23 bp):
TTCATGAACATTAAACGAACATG
Found at i:419186 original size:23 final size:24
Alignment explanation
Indices: 419147--419196 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
419137 TAATAGGGAT
419147 TTTTAATTTACAATTCA-TATCAC
1 TTTTAATTTACAATTCACTATCAC
* *
419170 TTTTAA-TTCCAATTTCACTTTCAC
1 TTTTAATTTACAA-TTCACTATCAC
419194 TTT
1 TTT
419197 CACTTTCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 5 0.22
23 10 0.43
24 8 0.35
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTAATTTACAATTCACTATCAC
Found at i:419191 original size:6 final size:6
Alignment explanation
Indices: 419182--419222 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
419172 TTAATTCCAA
419182 TTTCAC TTTCAC TTTCAC TTTCAC TTTCAC TTTCAC TTTCA
1 TTTCAC TTTCAC TTTCAC TTTCAC TTTCAC TTTCAC TTTCA
419223 ATTTTGATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.17, C:0.32, G:0.00, T:0.51
Consensus pattern (6 bp):
TTTCAC
Found at i:437311 original size:73 final size:73
Alignment explanation
Indices: 437201--437433 Score: 457
Period size: 73 Copynumber: 3.2 Consensus size: 73
437191 AGCTATACTA
*
437201 ATACCTATTATTTTCAGCGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
1 ATACCTATTATTTTCAGTGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
437266 CTATGTTC
66 CTATGTTC
437274 ATACCTATTATTTTCAGTGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
1 ATACCTATTATTTTCAGTGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
437339 CTATGTTC
66 CTATGTTC
437347 ATACCTATTATTTTCAGTGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
1 ATACCTATTATTTTCAGTGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
437412 CTATGTTC
66 CTATGTTC
437420 ATACCTATTATTTT
1 ATACCTATTATTTT
437434 ATTAATTGTG
Statistics
Matches: 159, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 159 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (73 bp):
ATACCTATTATTTTCAGTGCATTTTTCTCTGTTATATAGTTGAAAAATATTTTCTAACCATTCCG
CTATGTTC
Done.