Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013002.1 Kokia drynarioides strain JFW-HI SEQ_128020, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2356
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2063 original size:16 final size:16

Alignment explanation


    Indices: 2021--2064  Score: 52
    Period size: 17  Copynumber: 2.7  Consensus size: 16

       2011 TCGTCGTCTC

                 *       *  
       2021 AAAATGATAAATTTTT
          1 AAAATAATAAATTATT

            *                
       2037 TAAATATATAAATTATT
          1 AAAATA-ATAAATTATT

                       
       2054 AAAATAATAAA
          1 AAAATAATAAA

       2065 ATTACATTTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  16    9  0.39
  17   14  0.61

ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39


Consensus pattern (16 bp):   
AAAATAATAAATTATT
Done.