Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01013005.1 Kokia drynarioides strain JFW-HI SEQ_128023, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64349
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Warning! 410 characters in sequence are not A, C, G, or T
Found at i:2854 original size:22 final size:22
Alignment explanation
Indices: 2826--2868 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
2816 TTACGATCTC
2826 CATTTTTCAAACAATTTGCTCA
1 CATTTTTCAAACAATTTGCTCA
2848 CATTTTTCAAACAATTTGCTC
1 CATTTTTCAAACAATTTGCTC
2869 TTTCTCTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (22 bp):
CATTTTTCAAACAATTTGCTCA
Found at i:4068 original size:29 final size:29
Alignment explanation
Indices: 4026--4087 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
4016 CCTTTTTTCC
4026 TCTCGTACTATTAAGTAGGGTAGAATCTA
1 TCTCGTACTATTAAGTAGGGTAGAATCTA
4055 TCTCGTACTATTAAGTAGGGTAGAATCTA
1 TCTCGTACTATTAAGTAGGGTAGAATCTA
4084 TCTC
1 TCTC
4088 CCCTTTATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (29 bp):
TCTCGTACTATTAAGTAGGGTAGAATCTA
Found at i:10409 original size:49 final size:49
Alignment explanation
Indices: 10315--10410 Score: 113
Period size: 49 Copynumber: 2.0 Consensus size: 49
10305 TAGGGGCTTG
* * * *
10315 AGTTATACTTCAACTTGTGACCACATAACAGCCATTAATTAGGAGCCCT
1 AGTTATACTTCAACCTATGACCACATAACAGACATGAATTAGGAGCCCT
* * *
10364 AGTTATACTTCAACCTATGACCATATAA-TGACAGTGAATTGGGAGCC
1 AGTTATACTTCAACCTATGACCACATAACAGACA-TGAATTAGGAGCC
10411 TGAGTTGTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
48 3 0.08
49 36 0.92
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (49 bp):
AGTTATACTTCAACCTATGACCACATAACAGACATGAATTAGGAGCCCT
Found at i:34831 original size:24 final size:25
Alignment explanation
Indices: 34800--34858 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
34790 CTGTAGCGAC
*
34800 AAAAACCAAA-TAAGAAACCAGGAA-
1 AAAAACCAAACAAAG-AACCAGGAAG
*
34824 AACAACCAAACAAAGAACCAGGAAG
1 AAAAACCAAACAAAGAACCAGGAAG
34849 AAAAACCAAA
1 AAAAACCAAA
34859 ATAACCGTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.60
25 12 0.40
ACGTcount: A:0.66, C:0.20, G:0.12, T:0.02
Consensus pattern (25 bp):
AAAAACCAAACAAAGAACCAGGAAG
Found at i:34970 original size:28 final size:31
Alignment explanation
Indices: 34925--34984 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 31
34915 TACTTAATTA
34925 ATTCACACAACAACAAAACTTTTAAACCGAT
1 ATTCACACAACAACAAAACTTTTAAACCGAT
*
34956 ATTCAC-CAA-AA-AAAACTTTTAAACGGAT
1 ATTCACACAACAACAAAACTTTTAAACCGAT
34984 A
1 A
34985 ATATCCTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 17 0.61
29 2 0.07
30 3 0.11
31 6 0.21
ACGTcount: A:0.50, C:0.22, G:0.05, T:0.23
Consensus pattern (31 bp):
ATTCACACAACAACAAAACTTTTAAACCGAT
Found at i:40430 original size:21 final size:21
Alignment explanation
Indices: 40393--40437 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
40383 ATTCCATGTT
**
40393 CCATATCACCATGATTGTCGC
1 CCATATCACCACCATTGTCGC
*
40414 CCATATCACCACCATTGTCTC
1 CCATATCACCACCATTGTCGC
40435 CCA
1 CCA
40438 AATTCCGTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.40, G:0.09, T:0.27
Consensus pattern (21 bp):
CCATATCACCACCATTGTCGC
Found at i:43786 original size:54 final size:53
Alignment explanation
Indices: 43704--43818 Score: 153
Period size: 54 Copynumber: 2.2 Consensus size: 53
43694 AAAAACCTTA
* * *
43704 TTCCAGAAAACAAAATTGTTCAAGGGGAAGCTAC-TGTTTAGGGGGAGACTACTG
1 TTCCA-AAAACAAAATTGTTCAAGGGGAAGCT-CTTGCTCAGGGGGAGACTACTC
*
43758 TTCCAAAACACAACATTGTTCAAGGGGAAGCTCTTGCTCAGGGGGAGACTACTC
1 TTCCAAAA-ACAAAATTGTTCAAGGGGAAGCTCTTGCTCAGGGGGAGACTACTC
43812 TT-CAAAA
1 TTCCAAAA
43819 TGAGATTGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
53 9 0.16
54 46 0.84
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (53 bp):
TTCCAAAAACAAAATTGTTCAAGGGGAAGCTCTTGCTCAGGGGGAGACTACTC
Found at i:45943 original size:216 final size:215
Alignment explanation
Indices: 45558--54797 Score: 9846
Period size: 216 Copynumber: 42.8 Consensus size: 215
45548 TATATTTGGT
* * * * * *
45558 GAATGTTCGGAAAACTACTCGAAGGAATGGTTCGTCTTGAACACTTTAAGGAA-TCGAATTTAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT-GAAGTTATA
* * * * *
45622 AAAGAACTC-TAAAAAGTATGATAAGTTTGGAATTTCGTCCAACAACCAAGAGAGAAACAATTCT
65 AAAGAACTCGT-AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * ** * *
45686 CATGTAAATATGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
* *
45751 AATGATGCGACTTCCTGAGCAAG
194 AATGATGCGATTTCCT-AGCATG
* * * * * *
45774 TAATGTTCGGAAAATTGCTCGAAAGATTGGATTGTCTTGAATACTTTAAGGAACTAAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * *
45839 AAGAACTTGTAAAAGTTCGACATGTTCGGAAATTCATCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
45904 CGTAAACAAGTTTTGAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAGA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA-A
* *
45969 AT-ATGCAATTTCCCTCGCATG
195 ATGATGCGATTT-CCTAGCATG
* * * * * * *
45990 GAATATTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA-TCAGATTTAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGA-AGTTATA
* * * *
46054 AAAGAACTCGTAATA-TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGATAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* ** * * *
46118 ACGTAAATAANTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
46183 ATGATGCGACTTCCCAAGAATG
195 ATGATGCGA-TTTCCTAGCATG
* ** * * * ** * * *
46205 TAATGTTCAAAAAATTGCTCGAAGGATTCGACCACCTTGATTACTTTAAGGAACCGAAGATATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * *
46270 AAGAAGTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
46335 CGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACGAAATAAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
*
46400 TGATGCGATTTCCATCGCATG
196 TGATGCGATTTCC-TAGCATG
** * * * * * * * *
46421 GAATGTTCAAAAAATTACTTGAAGGAATGGATCGTCTTGAACACTTTCAGGAATTGGATTTAAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
** * * *
46486 AAGAACTCGTAAAAGTTTGTTAAGTTTGGAATTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* ** * * *
46551 CGTAAATATGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGGCCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
*
46616 TGATGCGATTTCCCGAGCATG
196 TGATGCGATTT-CCTAGCATG
* * * * *
46637 TAATGTTCGGAAAATTGCTTGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * *
46702 AAGAACTCGAAAAAGTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
46767 CGTAAACAAGTTTTTAATTCAAAGATTAAAACATG-TTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * *
46831 AGATACGATTTCGCTTGCATG
196 TGATGCGATTTC-CTAGCATG
* * * * * * * *
46852 GAATGTTCGAAAAATTACTGGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATTTAAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * ** *
46917 AAGAACTCGTAATATTTTGACAGGTTTTGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* ** * *
46982 CGTAAACAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * *
47047 CGATGCAATTTCCTGAGCATC
196 TGATGCGATTTCCT-AGCATG
* * * * * *
47068 TAAAGTTCGAAAAATTGCTCGAAGGATTGGATCG-CATTGAATACATTAAGGAACTGAAGCTATA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACTGAAGTTATA
* * * * * *
47132 AAAGAAGTCGTAAAAGTTCGACAAGTTCAGAAGTTCCTGCAAGAACC--GAGAGACACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *** * *
47195 -CGGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTTTGAAATAAAAAACTATTTAGACTA
130 AC-GTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
* * * *
47259 AATGTTACGATTTCCCGAGAATG
194 AATGATGCGATTT-CCTAGCATG
* * * * * * * *
47282 GATTGATCGAAAAACTGCTAGAAGGAATGAATCGTCTTGAATACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * *
47347 AAGAACTCGTAAAAGTTTGTCAATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
47412 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTGTTTAGGCCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
47477 TGATACGATTTCTCTCGCATG
196 TGATGCGATTTC-CTAGCATG
* * * * * ** *
47498 GAATGTTCGCAAAATTACTCAAAGGAATGGATCGTCTTGAACACTTTAATGAACAAAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * ** * * *
47563 AAGAACTCGTAAAAGTTTGTCAATTTCATAATTTCATCCAAGAACCAAGAGATAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
47628 AGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
47693 TGATGCAATTTCCCTCGCATG
196 TGATGCGATTT-CCTAGCATG
* * * *
47714 GAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA-TCAGATTTAG
1 GAATG-TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGA-AGTTAT
* *
47777 AAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
64 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
** ** ** *
47842 CACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGCGGCAAACTTTTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
* * * *
47907 AATGATGCTACTTCCCAAGAATG
194 AATGATGCGA-TTTCCTAGCATG
* ** * * * * * ** *
47930 TAATGTTCAAAAAATTGCTCGAAGGATTGAACCATCTTGATTACTTTAAGGAACCAAAGATATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* ** * *
47995 AAGAACTCGTAAAA--TT--CAATTTTAGAATTTCGTCCAAGAACCAAGAGAGAATCAATT-TCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
48055 CATAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTCAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
48120 TGATACGATTTCCCTCGCATG
196 TGATGCGATTT-CCTAGCATG
* * * * * * *
48141 GAATGTTTC-GAAAATTACTCGAAGGAATGGATCTTCTTGAACACTTTAAGGAATTGGATTTAGA
1 GAATG-TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
* * *
48205 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACTAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* ** * ** * * * *
48270 ATGTAAATAAGTTTTTAATTCAAAGGCCAAAATTTGTTTACATCA-GACAAATTGTTTATACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
48334 ATGATGCGACTTCCTAAGAATG
195 ATGATGCGATTTCCT-AGCATG
* ** * * * * *
48356 AAATGTTTAGAAAATTGCTCGAAGGATTGGA-CAATCTTGATTACTCTAAGGAACCGAAGTTATA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACTGAAGTTATA
* * * * * *
48420 AAAAAACTCGTAAATGTTCGACAAGTTCGAAAGTTCGTCCAAGAACAAAGAGAGACACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
48485 ACGTAAATAAGTTTTTAATTCACAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
*
48550 ATGATACGATTTCCCTCA-CATG
195 ATGATGCGATTT-CCT-AGCATG
* * * * * * * * *
48572 GAATGTTCCGAAAATTACCCAAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATTTAGAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * *
48637 AAGAACTCGAAAAAGTTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* ** ** ** * *
48702 CGTAAA-AGAGTTTTAAATTCAAAGGCCAAAACTTGTTTACAAAGCGACCAACTTTTTACACCAA
131 CGTAAATA-AGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
48766 ATGATGCGACTTCCCAAGAATG
195 ATGATGCGA-TTTCCTAGCATG
* * * * * * * * * *
48788 TAATGTTCAGAAAATTGATCGAAGCATTGGACCATCTTGATTACTTTAAGGAACCGAAGATATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * *
48853 AAGAACTCGTAAAATTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
48918 CGTAAATAATTTTTTATTTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * *
48983 TGATCCGATTTCCAGAGAATG
196 TGATGCGATTTCC-TAGCATG
* * * * * * * *
49004 GATTGTTCGAAAAACTGGTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTAAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * * *
49069 AAGAACTCGTAAAAGTTTTTA-AATTTCAGAATTTCGTCCAAAAACCAAGAGAGACACAATTCTC
66 AAGAACTCGTAAAAG-TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
49133 AAGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
49198 GTGATGCGATTTCCCT-CCTATG
195 ATGATGCGATTT-CCTAGC-ATG
* * * * * * * * * *
49220 AAACGTTCGGTAAATTACTCGAAGGAATGGATTGCCTTAAACACTTTAATGAACTGAAG-CACTA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTA-TA
* * ** * * *
49284 AAAGAACTCGTAAAAGTTTGTCAATTTCAAAATTTTGTCCAAGAACCAAGAGGGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
**
49349 ACGTAAATATCTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
49414 ATGATTCGATTTCCCTCGCATG
195 ATGATGCGATTT-CCTAGCATG
* * * * * * * *
49436 GAATGTTCCGAAAATTACCCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACTGGATTTAGAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * *
49501 AAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGTGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
49566 CGTAAATAAGTTTTTAATTCAAAGATCACAACTTGTTTACAAAATGAAAAACAATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
49631 TGATACGATTTCCTGAGAATG
196 TGATGCGATTTCCT-AGCATG
* * * * * *
49652 GATTGTTCGAAAAACTGCTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * *
49717 AAGAACTCGTAAAAGTTTGTC-AGTTTCAGAATTTCGTCCAAGAACCAAGAGAAAAACAATTCTC
66 AAGAACTCGTAAAAGTTTGACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
49781 ACGTAAATAATTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATG-AAAACTATGTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
*
49845 ATGATGCGATTTCCCTCGCATG
195 ATGATGCGATTT-CCTAGCATG
* * * * * * * *
49867 GAATGCTCGCAAAATTACTCGAAGGAATTGATCGTCTTGAACACTTTAATGAAGTGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * *
49932 AAGAACTCGTAAAAGTTTGTCAATTTCAGAA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
49996 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAGAAACTATTTAG---AGA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
50058 T--TTC--TCT-C-A-CATG
196 TGATGCGATTTCCTAGCATG
* * * * * * * * *
50071 GAATATTTC-GAAAATTACCCGAAGGAATGGATCGTCTTGAACATTTTAAAGAACTGGATTTAGA
1 GAAT-GTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
* * * * * *
50135 AAATAACTCGTAAAAGTTTGACAAATTCGGAAGTTCGTCGAACAACTAAGAGAGAAACGATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
** * ** * *
50200 ACGTAAATAAGTTTTTAATTCAAAGGCCAAAACCTGTTTACAAAGCGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
50265 ATGATGCGACTTCCCAGGAATG
195 ATGATGCGATTTCCTA-GCATG
* ** * * * *
50287 GAATCTTTAGAAAATTGCTCGAAGGATTGGATAGTCTTGATTACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* ** *
50352 AAGAACTCGTAAATGTTCAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
50417 CGTAAATAAGTTTTTAATTCACAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
50482 -GAACGCAATTTCCCTCA-CATG
196 TG-ATGCGATTT-CCT-AGCATG
* * * * * * *
50503 GAATGTTTC-AAAAATTACCCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGGATTTAGA
1 GAATG-TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
* * * * *
50567 AAGGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAACAACTAAGAGAGAAATAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* ** ** * *
50632 ACGTAAATAGGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGCGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
50697 ATGATGCGACTTCCCAAGAATG
195 ATGATGCGA-TTTCCTAGCATG
* * * *
50719 GAATGTTCAGAAAATTGCTCGAAGGATTGGA-CAGTCTTGATTACTTTAAGGAACCGAAGTTATA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACTGAAGTTATA
* * * * * *
50783 AAAGAACTCGTAAATGTTCGACAAGTTCGGAAGTTCGTCCAACAACCTAGAGAGACACAATTCTA
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
50848 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAGATCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
50913 ATGATGCGATTTCTCGAGAATG
195 ATGATGCGATTTC-CTAGCATG
* * * * * * *
50935 GATTTTTCGAAAAACTGCTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
** * *
51000 AAGAACTCGTAAAAGTTTG-TGAGTTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
66 AAGAACTCGTAAAAGTTTGACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
51064 ACGTAAGTAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
*
51129 ATGATGCGATTTCCCTCGCATG
195 ATGATGCGATTT-CCTAGCATG
* * * * * * * *
51151 GAATGTTTGGAAAATTACCCGAAGGAATGGATCGTCTTGAACACTTTATGGAACTGGATTTAGAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * * *
51216 AAGAAATCATAAAAGTTTGACAAGTTCGGAAGTTCATCCAACAACCGAGAGAGAAATAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * ** * *
51281 CGTCAATAAGTTTTTAATTCGAAGGTCAAAACTTTTTTACAAAGCGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * * *
51346 TGATGTGACTTCCCAAGAATG
196 TGATGCGA-TTTCCTAGCATG
* * ** * * * * * ** * *
51367 CATTGTTTAGAAAATTGCTCGAAGGATTGGACCATCTTGATTACTCTAAGGAACCAAAGATATAG
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* *** * *
51432 AAGAACTCATAAAAGTACAACAACTTCGGAAGTTCGTCCTAGAACCAAGAGAGACAA-AATTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTC
* *
51496 ATGTAAATAAGTTTTTAACTT-AAAGATCAAAACTTGTTTACAAAATGAAAAGCTATTTAGACCA
130 ACGTAAATAAGTTTTTAA-TTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
*
51560 AATGATGCGATTTCCCTCGCATG
194 AATGATGCGATTT-CCTAGCATG
* * * * * * *
51583 GAATGTTTGGAAAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGGAA-TTAGATTTAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGA-AGTTATA
* * * *
51647 AAAGAACTCTTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACTAAGAAAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
** ** * *
51712 ACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTAC-ATCTGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
51776 AAGATGCGACTTCCTAAGAATG
195 ATGATGCGATTTCCT-AGCATG
** ** * * *
51798 GAATGTTTAGAAAATTAATCGAAGGATTGGA-CAGTCTTGATTACTTTAAGGAACCGAAGTTATA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACTGAAGTTATA
* * * * *
51862 AAAGAACTCATAAATGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAATAGAGACACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
**
51927 ACGTAAATAAGTTTTTAATTCACTGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
51992 ATGATGCCATTTCCATCGCATG
195 ATGATGCGATTTCC-TAGCATG
* * * * * * * *
52014 GAATGTTCCGAAAATTACCCGAAGGAATGGATCGTCTTGAACACTTTAA-GAAATCAGATTTAGA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGA-AGTTATA
* *
52078 AAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
** * ** * * *
52143 ACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTTTTTACAAAGCGACAAACTTTTTTGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
52208 ATGATGCGACTTCCCAAGAATG
195 ATGATGCGA-TTTCCTAGCATG
* ** * * * *
52230 TAATGTTTAGAAAATTGCTCGAAGGATTGGACCGTCTTGATTACTTTAAGGAACCGAAGATT-TA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAG-TTATA
** * * *
52294 AAAGAACTCGTAAAAGTTCAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTTTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
52359 AAGTAAATAAG-TTTTAATTCACAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
52423 ATGATGCGATTTCCCGAGAATG
195 ATGATGCGATTT-CCTAGCATG
* ** * * * * *
52445 GATTGTTCAAAAAACTGCTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTGAAGCTAAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * * * *
52510 AAGAACTCGTAAAAGTTTCTA-AATTTCAGAATTTCGTCCAAAAACCAAGAGAGACACAATTTTC
66 AAGAACTCGTAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
52574 AAGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
52639 ATGATGCGACTTCCCGAGCATG
195 ATGATGCGA-TTTCCTAGCATG
* * * * * * * * * * * * *
52661 TAACGTTCAGAAAATTGCTCGATGTATTGTATCGGCTTTACTACTTTATGGAACCGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * *
52726 AAGAACTCATAAAAGTTTGACAAGTTCAGATGTTCGTCCAGGAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
52791 CGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAAAAAGAAAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
52856 TGATACGATTTCCCTCGCATG
196 TGATGCGATTT-CCTAGCATG
* * * * * * *
52877 GAATGTTCCGAAAATTACTCGAAGGAATGGATCATCTTGAACACATTAAGGAACCGAA-TCTAAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT-TATA
* * * * * * *
52941 AAAGAACTTGTAAAAGTTTGACAATTTTGTAAGTTCATCCAACAACTAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
** ** *
53006 ACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGATTAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* *
53071 ATGATGCGACTTCCCGAGCATG
195 ATGATGCGA-TTTCCTAGCATG
* * * * * *
53093 TAATGTTC-AAAACATTGCTCAAAGGATTAGATCGTCTTGAATACTTTAAGGAACTGAAGCTATA
1 GAATGTTCGGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
* * * * * *
53157 AAAGAACTAGTAAAAGTTCGAAAAGTTCGAAAATTCGTCCAAGAACCAAGAGAGGAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
53222 ACGTAAAAAAGTTTTTAATTCAAAGATCAAAACATGTTTACAAAATGAAAAACTATTTAGACCAG
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA-
* * *
53287 AA-GATGCAATTTTCTTCGCATG
194 AATGATGCGA-TTTCCTAGCATG
* * * * * * *
53309 AAATGTTC-GAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAGGGAACCGAATTTAGAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * *
53373 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACTAAGAGAGAAATAATTCTCT
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
** ** * *
53438 CGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGCGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* * * *
53503 TGATGTGACTTCCCAAGAATG
196 TGATGCGA-TTTCCTAGCATG
* * * * * * * ** *
53524 TAATGTTCAGAAAATT-CCCAAAGG-ATAGGACCATCTTGATTACTTTAAGGAACCAAAGATATA
1 GAATGTTCGGAAAATTGCTCGAAGGAAT-GGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
* *
53587 AAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
53652 ACGTAAATAAGTTTTTAATTCAAAGATCAAAATTTGTTTACAAAATAAAAAACTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
53717 ATGATGCTATTTCCCGAGAATG
195 ATGATGCGATTT-CCTAGCATG
* * * * * * ** *
53739 GATTGTTCGAAAAACTGCTAGAATGAATGGATCGTCTTCAATACTTTAATTAACTGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * *
53804 AAGAACTTGTAAAAGTTTGTA-AATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTC
66 AAGAACTCGTAAAAGTTTG-ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
53868 ACGTAAATAAGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATATTCATCTTGTTTACAAAA
130 ACGTAAATAAGTTTTTAATTC-AA-A-G---A------T-C--AA-A---A-CTTGTTTACAAAA
* * * *
53933 TAAAAAACTTTTTAGACCAAATGATGCAATTTCCCTCGCATG
175 TGAAAAACTATTTAGACCAAATGATGCGATTT-CCTAGCATG
* * ** * ** * * * *
53975 GAATGTTCGGTAAATTACTCGAAGGAATTAATCATCTTGAACGCTTTAATGAGCAGAAGCTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * * * *
54040 AAGAACTCGTAAAAGTTTGTCAATTTCAGAATTTTGTCCAAGAACCAAGAGGGAAACAATTTTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
54105 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* *
54170 CGATGCGATTTCCCTCGCATG
196 TGATGCGATTT-CCTAGCATG
* * * * * ** * *
54191 GAATGTTC-CAAAACTTACCCGAAGGAATGAATCGTCTTGAACACTTTAAGGAACCAAATTTAAA
1 GAATGTTCGGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
* * *
54255 AAAGAACACGTTAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* ** ** * * *
54320 ACGTCAGCAAGTTTTTAATTCAAAGGCCAAAACATGTTTACAAAATGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * *
54385 ATGATGAGAGTTCCCAAGCATG
195 ATGATGCGA-TTTCCTAGCATG
* * * **
54407 TAATGTTCGGAAAATTGCTTGAAGGACTGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
1 GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
* * * * *
54472 AAGAAC-CAGTAACAGTTTGACAAATTCGAAAGTTCGTCCAAGAA-CAAGGAGAGACACAATTAT
66 AAGAACTC-GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA-GAGAGAAACAATTCT
54535 CACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCA
* * *
54600 AATGATGCTATTTCTCGAGAAT-
194 AATGATGCGATTTC-CTAGCATG
* * * * * * **
54622 GAATTGTTAGAAAAACTGCTAGAATGAATGAATCGTCTTGAATACTTTAATTAACTGAA-TCTAT
1 GAA-TGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGT-TAT
* * * * * *
54686 AAAAGAACTTGTAAAAGTTTGTA-AATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAATAATTC
64 AAAAGAACTCGTAAAAGTTTG-ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* *
54750 TCACGTTAATAAGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAAT
128 TCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAAT
54798 ATTCATATTG
Statistics
Matches: 7502, Mismatches: 1368, Indels: 308
0.82 0.15 0.03
Matches are distributed among these distances:
204 81 0.01
205 83 0.01
206 1 0.00
208 5 0.00
210 6 0.00
211 130 0.02
212 43 0.01
213 4 0.00
214 273 0.04
215 1452 0.19
216 5143 0.69
217 85 0.01
218 2 0.00
219 1 0.00
220 1 0.00
221 2 0.00
222 1 0.00
223 1 0.00
224 1 0.00
228 1 0.00
229 1 0.00
230 1 0.00
231 2 0.00
232 1 0.00
233 1 0.00
234 1 0.00
235 3 0.00
236 176 0.02
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (215 bp):
GAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
TGATGCGATTTCCTAGCATG
Found at i:46721 original size:432 final size:432
Alignment explanation
Indices: 45558--60774 Score: 12084
Period size: 432 Copynumber: 34.8 Consensus size: 432
45548 TATATTTGGT
* * *
45558 GAATGTTCGGAAAACTACTCGAAGGAATGGTTCGTCTTGAACACTTTAAGGAA-TCGAATTTAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACT-GAATTTATA
* * *
45622 AAAGAACTC-TAAAAAGTATGATAAGTTTGGAATTTCGTCCAACAACCAAGAGAGAAACAATTCT
65 AAAGAACTCGT-AAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* * * *
45686 CATGTAAATATGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* * * * * * *
45751 AATGATGCGACTTCCTGAGCAAGTAATGTTCGGAAAATTGCTCGAAAGATTGGATTGTCTTGAAT
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
** * * * * * *
45816 ACTTTAAGGAACTAAAGCTATAAAAGAACTTGTAAAAGTTCGACATGTTCGGAAATTCATCCAAG
259 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * *
45881 AACCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTGAATTCAAAGATCAAAACATGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
*
45946 AATGAAAAACTATTTAGACCAGAAT-ATGCAATTTCCCTCGCATG
389 AATGAAAAACTATTTAGACCA-AATGATGCGATTTCCCTCGCATG
* * * *
45990 GAATATTCGAAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA-TCAGATTTAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGA-ATTTATA
* * * *
46054 AAAGAACTCGTAATA-TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGATAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * * *
46118 ACGTAAATAANTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * * * ** * * * ** *
46183 ATGATGCGACTTCCCAAGAATGTAATGTTCAAAAAATTGCTCGAAGGATTCGACCACCTTGATTA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * *
46248 CTTTAAGGAACCGAAGATATAAAAGAAGTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * * *
46313 ACCAAGAGAGACACAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACGAA
325 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
* *
46378 ATAAAAAACTATTTAGACCAAATGATGCGATTTCCATCGCATG
390 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
** * * * * *
46421 GAATGTTCAAAAAATTACTTGAAGGAATGGATCGTCTTGAACACTTTCAGGAATTGGATTTAAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
** *
46486 AAGAACTCGTAAAAGTTTGTTAAGTTTGGAATTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * * *
46551 CGTAAATATGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGGCCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * *
46616 TGATGCGATTTCCCGAGCATGTAATGTTCGGAAAATTGCTTGAAGGATTGGATCGTCTTGAATAC
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
46681 TTTAAGGAACCGAAGCTATAAAAGAACTCGAAAAAGTTCGACAAGTTCGGAAATTCATCCAAGAA
261 TTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA
* * *
46746 CCAAGAGAGAAACAATTCTCACGTAAACAAGTTTTTAATTCAAAGATTAAAACATG-TTACAAAA
326 CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAA
* * * *
46810 TGAAAAACTATTTAGACCAAAAGATACGATTTCGCTTGCATG
391 TGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * *
46852 GAATGTTCGAAAAATTACTGGAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATTTAAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * *
46917 AAGAACTCGTAATATTTTGACAGGTTTTGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * *
46982 CGTAAACAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * * ** * * *
47047 CGATGCAATTTCCTGAGCATCTAAAGTTCGAAAAATTGCTCGAAGGATTGGATCG-CATTGAATA
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTC-TTGAATA
* * * * * *
47111 CATTAAGGAACTGAAGCTATAAAAGAAGTCGTAAAAGTTCGACAAGTTCAGAAGTTCCTGCAAGA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * ***
47176 ACC--GAGAGACACAATTCTC-CGGTAAATAAGTTTTTAATTCAAAGATCAAAACATGTTTTTGA
325 ACCAAGAGAGAAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* * * * ** *
47238 AATAAAAAACTATTTAGACTAAATGTTACGATTTCCCGAGAATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * * * * **
47282 GATTGATCGAAAAACTGCTAGAAGGAATGAATCGTCTTGAATACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * *
47347 AAGAACTCGTAAAAGTTTGTCAA-TTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * *
47411 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTGTTTAGGCCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * ** * * * *
47476 ATGATACGATTTCTCTCGCATGGAATGTTCGCAAAATTACTCAAAGGAATGGATCGTCTTGAACA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* ** * * * * *
47541 CTTTAATGAACAAAAGCTATAAAAGAACTCGTAAAAGTTTGTCAATTTCATAATTTCATCCAAGA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* *
47606 ACCAAGAGATAAACAATTCTCAAGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
325 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
*
47671 ATGAAAAACTATTTAGACCAAATGATGCAATTTCCCTCGCATG
390 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * *
47714 GAATGTTTC-GAAAATTGCTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAA-TCAGATTTAG
1 GAATG-TTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGA-ATTTAT
47777 AAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
64 AAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* ** **
47842 CACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGCGGCAAACTTTTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* * * * * ** * * * * *
47907 AATGATGCTACTTCCCAAGAATGTAATGTTCAAAAAATTGCTCGAAGGATTGAACCATCTTGATT
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * * *
47972 ACTTTAAGGAACCAAAGATATAAAAGAACTCGTAAAA--TT--CAATTTTAGAATTTCGTCCAAG
259 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* *
48033 AACCAAGAGAGAATCAATT-TCACATAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* *
48097 AATGAAAAACTATTCAGACCAAATGATACGATTTCCCTCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * *
48141 GAATGTTTC-GAAAATTACTCGAAGGAATGGATCTTCTTGAACACTTTAAGGAATTGGATTTAGA
1 GAATG-TTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATA
*
48205 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACTAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * * ** * *
48270 ATGTAAATAAGTTTTTAATTCAAAGGCCAAAATTTGTTTACATCA-GACAAA-TTGTTTATACCA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTT-TTTAGACCA
* ** * * ** * * *
48333 AATGATGCGACTTCCTAAGAATGAAATGTTTAGAAAATTGCTCGAAGGATTGGA-CAATCTTGAT
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATC-GTCTTGAA
* * * * *
48397 TACTCTAAGGAACCGAAGTTATAAAAAAACTCGTAAATGTTCGACAAGTTC-GAAAGTTCGTCCA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCA
* * *
48461 AGAACAAAGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCACAGATCAAAACTTGTTTAC
322 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC
* *
48526 AAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCACATG
387 AAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * *
48572 GAATGTTCCGAAAATTACCCAAAGGAATGGATCGTCTTGAACACTTTAAGGAACCGGATTTAGAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* **
48637 AAGAACTCGAAAAAGTTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * ** ** *
48702 CGTAAA-AGAGTTTTAAATTCAAAGGCCAAAACTTGTTTACAAAGCGACCAACTTTTTACACCAA
131 CGTAAATA-AGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * * * * * * * * * *
48766 ATGATGCGACTTCCCAAGAATGTAATGTTCAGAAAATTGATCGAAGCATTGGACCATCTTGATTA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* *
48831 CTTTAAGGAACCGAAGATATAAAAGAACTCGTAAAATTTTGACAAGTTCAGAAGTTCGTCCAAGA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * *
48896 ACCAAGAGAGACACAATTCTCACGTAAATAATTTTTTATTTCAAAGATCAAAACTTGTTTACAAA
325 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
* *** *
48961 ATGAAAAACTATTTAGACCAAATGATCCGATTTCCAGAGAATG
390 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * ** * * * * **
49004 GATTGTTCGAAAAACTGGTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTAAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * *
49069 AAGAACTCGTAAAAGTTTTTA-AA-TTTCAGAATTTCGTCCAAAAACCAAGAGAGACACAATTCT
66 AAGAACTCGTAAAAG-TTTGACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* * * *
49132 CAAGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* ** * * * * * * *
49197 AGTGATGCGATTTCCC-TCCTATGAAACGTTCGGTAAATTACTCGAAGGAATGGATTGCCTTAAA
194 AATGATGCGATTTCCCGAGC-ATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * * * *
49261 CACTTTAATGAACTGAAGC-ACTAAAAGAACTCGTAAAAGTTTGTCAATTTCAAAATTTTGTCCA
258 TACTTTAAGGAACCGAAGCTA-TAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCA
* **
49325 AGAACCAAGAGGGAAACAATTCTCACGTAAATATCTTTTTAATTCAAAGATCAAAACTTGTTTAC
322 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC
*
49390 AAAATGAAAAACTATTTAGACCAAATGATTCGATTTCCCTCGCATG
387 AAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * *
49436 GAATGTTCCGAAAATTACCCGAAGGAATGGATCGTCTTAAACACTTTAAGGAACTGGATTTAGAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * *
49501 AAGAACTCGTAAATGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGTGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * **
49566 CGTAAATAAGTTTTTAATTCAAAGATCACAACTTGTTTACAAAATGAAAAACAATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * * * * * *
49631 TGATACGATTTCCTGAGAATGGATTGTTCGAAAAACTGCTAGAAGGAATGGATCGTCTTGAATAC
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * *
49696 TTTAATGAACTGAAGCTATAAAAGAACTCGTAAAAGTTTGTC-AGTTTCAGAATTTCGTCCAAGA
261 TTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCAGAAGTTCGTCCAAGA
* * *
49760 ACCAAGAGAAAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGATCAAAACTTGTTTAGAAA
325 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
*
49825 ATG-AAAACTATGTAGACCAAATGATGCGATTTCCCTCGCATG
390 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * **
49867 GAATGCTCGCAAAATTACTCGAAGGAATTGATCGTCTTGAACACTTTAATGAAGTGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * *
49932 AAGAACTCGTAAAAGTTTGTCAA-TTTCAGAA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * *
49995 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAGAAACTATTTAG-----
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * * *
50055 A-GAT----TTCTCTC-A-CATGGAATATTTC-GAAAATTACCCGAAGGAATGGATCGTCTTGAA
195 ATGATGCGATT-TCCCGAGCATGGAAT-GTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * ** * * * * *
50112 CATTTTAAAGAACTGGATTTAGAAAATAACTCGTAAAAGTTTGACAAATTCGGAAGTTCGTCGAA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * * ** *
50177 CAACTAAGAGAGAAACGATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACCTGTTTACA
323 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
** * * * ** *
50242 AAGCGACAAACTTTTTAGACCAAATGATGCGACTTCCCAGGAATG
388 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* ** * * * ** * *
50287 GAATCTTTAGAAAATTGCTCGAAGGATTGGATAGTCTTGATTACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* ** * * *
50352 AAGAACTCGTAAATGTTCAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * *
50417 CGTAAATAAGTTTTTAATTCACAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * * * * *
50482 -GAACGCAATTTCCCTCA-CATGGAATGTTTC-AAAAATTACCCGAAGGAATGGATCGTCTTGAA
196 TG-ATGCGATTTCCC-GAGCATGGAATG-TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * ** * *
50544 CACTTTAAGGAACTGGATTTAGAAAGGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * * * **
50609 CAACTAAGAGAGAAATAATTCTCACGTAAATAGGTTTTTAATTCAAAGGCCAAAACTTGTTTACA
323 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
** * * * ** *
50674 AAGCGACAAACTTTTTAGACCAAATGATGCGACTTCCCAAGAATG
388 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * ** * *
50719 GAATGTTCAGAAAATTGCTCGAAGGATTGGA-CAGTCTTGATTACTTTAAGGAACCGAAGTTATA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATC-GTCTTGAACACTTTAAGGAACTGAATTTATA
* * * * * *
50783 AAAGAACTCGTAAATGTTCGACAAGTTCGGAAGTTCGTCCAACAACCTAGAGAGACACAATTCTA
65 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * * *
50848 ACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAGATCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * * * * * *
50913 ATGATGCGATTTCTCGAGAATGGATTTTTCGAAAAACTGCTAGAAGGAATGGATCGTCTTGAATA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * ** *
50978 CTTTAATGAACTGAAGCTATAAAAGAACTCGTAAAAGTTTG-TGAGTTTCAGAATTTCGTCCAAG
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCAGAAGTTCGTCCAAG
*
51042 AACCAAGAGAGAAACAATTCTCACGTAAGTAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
51107 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * *
51151 GAATGTTTGGAAAATTACCCGAAGGAATGGATCGTCTTGAACACTTTATGGAACTGGATTTAGAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * * *
51216 AAGAAATCATAAAAGTTTGACAAGTTCGGAAGTTCATCCAACAACCGAGAGAGAAATAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * ** * ** *
51281 CGTCAATAAGTTTTTAATTCGAAGGTCAAAACTTTTTTACAAAGCGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * * * * * ** * * * *
51346 TGATGTGACTTCCCAAGAATGCATTGTTTAGAAAATTGCTCGAAGGATTGGACCATCTTGATTAC
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * * *** * * *
51411 TCTAAGGAACCAAAGATATAGAAGAACTCATAAAAGTACAACAACTTCGGAAGTTCGTCCTAGAA
261 TTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA
*
51476 CCAAGAGAGACAA-AATTCTCATGTAAATAAGTTTTTAACTT-AAAGATCAAAACTTGTTTACAA
326 CCAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTTAA-TTCAAAGATCAAAACTTGTTTACAA
*
51539 AATGAAAAGCTATTTAGACCAAATGATGCGATTTCCCTCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * *
51583 GAATGTTTGGAAAATTACTCGAAGGAATGGATCATCTTGAACACTTTAAGGAA-TTAGATTTAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGA-ATTTATA
* * * *
51647 AAAGAACTCTTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACTAAGAAAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* ** *
51712 ACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTAC-ATCTGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * ** * ** ** * *
51776 AAGATGCGACTTCCTAAGAATGGAATGTTTAGAAAATTAATCGAAGGATTGGA-CAGTCTTGATT
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATC-GTCTTGAAT
* * * * *
51840 ACTTTAAGGAACCGAAGTTATAAAAGAACTCATAAATGTTCGACAAGTTCGGAAGTTCGTCCAAG
259 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * **
51905 AACCAATAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCACTGATCAAAACTTGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* *
51970 AATGAAAAACTATTTAGACCAAATGATGCCATTTCCATCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * *
52014 GAATGTTCCGAAAATTACCCGAAGGAATGGATCGTCTTGAACACTTTAA-GAAATCAGATTTAGA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGA-ATTTATA
**
52078 AAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * ** * *
52143 ACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTTTTTACAAAGCGACAAACTTTTTTGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * * * ** * * *
52208 ATGATGCGACTTCCCAAGAATGTAATGTTTAGAAAATTGCTCGAAGGATTGGACCGTCTTGATTA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * ** * *
52273 CTTTAAGGAACCGAAGATTTAAAAGAACTCGTAAAAGTTCAAAAAGTTCGGAAGTTCGTCCAAGA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* * * *
52338 ACCAAGAGAGACACAATTTTCAAGTAAATAAG-TTTTAATTCACAGATCAAAACTTGTTTACAAA
325 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
** *
52402 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCGAGAATG
390 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* ** * * * * * ** *
52445 GATTGTTCAAAAAACTGCTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTGAAGCTAAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * * *
52510 AAGAACTCGTAAAAGTTT--CTAAATTTCAGAATTTCGTCCAAAAACCAAGAGAGACACAATTTT
66 AAGAACTCGTAAAAGTTTGAC-AAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* * * *
52573 CAAGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* * * * * * * * * * *
52638 AATGATGCGACTTCCCGAGCATGTAACGTTCAGAAAATTGCTCGATGTATTGTATCGGCTTTACT
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* * * *
52703 ACTTTATGGAACCGAAGCTATAAAAGAACTCATAAAAGTTTGACAAGTTCAGATGTTCGTCCAGG
259 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* *
52768 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTATAATTCAAAGATCAAAACATGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* * *
52833 AAAGAAAAACTTTTTAGACCAAATGATACGATTTCCCTCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * *
52877 GAATGTTCCGAAAATTACTCGAAGGAATGGATCATCTTGAACACATTAAGGAACCGAATCTAAAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * *
52942 AAGAACTTGTAAAAGTTTGACAATTTTGTAAGTTCATCCAACAACTAAGAGAGAAACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* **
53007 CGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAATGATTAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * * * * *
53072 TGATGCGACTTCCCGAGCATGTAATGTTC-AAAACATTGCTCAAAGGATTAGATCGTCTTGAATA
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAA-ATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * * *
53136 CTTTAAGGAACTGAAGCTATAAAAGAACTAGTAAAAGTTCGAAAAGTTC-GAAAATTCGTCCAAG
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAG
* * *
53200 AACCAAGAGAGGAACAATTCTCACGTAAAAAAGTTTTTAATTCAAAGATCAAAACATGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* * *
53265 AATGAAAAACTATTTAGACCAGAA-GATGCAATTTTCTTCGCATG
389 AATGAAAAACTATTTAGACCA-AATGATGCGATTTCCCTCGCATG
* * * *
53309 AAATGTTC-GAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAGGGAACCGAATTTAGAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * *
53373 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACTAAGAGAGAAATAATTCTCT
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* ** *
53438 CGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGCGACAAACTTTTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
* * * * * * * * * * *
53503 TGATGTGACTTCCCAAGAATGTAATGTTCAGAAAATT-CCCAAAGG-ATAGGACCATCTTGATTA
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAAT-GGATCGTCTTGAATA
* * * *
53566 CTTTAAGGAACCAAAGATATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGA
* *
53631 ACCAAGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAATTTGTTTACAAA
325 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAA
* * ** *
53696 ATAAAAAACTATTTAGACCAAATGATGCTATTTCCCGAGAATG
390 ATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * * * ** **
53739 GATTGTTCGAAAAACTGCTAGAATGAATGGATCGTCTTCAATACTTTAATTAACTGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * *
53804 AAGAACTTGTAAAAGTTTGTA-AA-TTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCT
66 AAGAACTCGTAAAAGTTTG-ACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
53867 CACGTAAATAAGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATATTCATCTTGTTTACAAA
129 CACGTAAATAAGTTTTTAATTC-AA-A-G---AC-------C--AA-A---A-CTTGTTTACAAA
* * ** * *
53932 ATAAAAAACTTTTTAGACCAAATGATGCAATTTCCCTCGCATGGAATGTTCGGTAAATTACTCGA
174 ATGAAAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGA
** * ** * * * *
53997 AGGAATTAATCATCTTGAACGCTTTAATGAGCAGAAGCTATAAAAGAACTCGTAAAAGTTTGTCA
239 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACA
* * * * *
54062 ATTTCAGAATTTTGTCCAAGAACCAAGAGGGAAACAATTTTCACGTAAATAAGTTTTTAATTCAA
304 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
54127 AGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCTCGCATG
369 AGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * ** *
54191 GAATGTTC-CAAAACTTACCCGAAGGAATGAATCGTCTTGAACACTTTAAGGAACCAAATTTAAA
1 GAATGTTCGGAAAA-TTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATA
* * *
54255 AAAGAACACGTTAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* ** * * *
54320 ACGTCAGCAAGTTTTTAATTCAAAGGCCAAAACATGTTTACAAAATGACAAACTTTTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
* * * * * *
54385 ATGATGAGAGTTCCCAAGCATGTAATGTTCGGAAAATTGCTTGAAGGACTGGATCGTCTTGAATA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * *
54450 CTTTAAGGAACCAAAGTTATAAAAGAAC-CAGTAACAGTTTGACAAATTC-GAAAGTTCGTCCAA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAA
* *
54513 GAA-CAAGGAGAGACACAATTATCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC
323 GAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAC
* * ** *
54577 AAAATGAAAAACTATTTAGACCAAATGATGCTATTTCTCGAGAAT-
387 AAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * * * ** *
54622 GAATTGTTAGAAAAACTGCTAGAATGAATGAATCGTCTTGAATACTTTAATTAACTGAATCTATA
1 GAA-TGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATA
* * * * *
54687 AAAGAACTTGTAAAAGTTTGTA-AA-TTTCAGAATTTCGTCCAAAAACCAAGAGAGAAATAATTC
65 AAAGAACTCGTAAAAGTTTG-ACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTC
*
54750 TCACGTTAATAAGTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATATTCATATTGTTTACAA
128 TCACGTAAATAAGTTTTTAATTC-AA-A-G---AC-------C-AAA-A--C---TTGTTTACAA
* ** * * *
54815 AATAAAAAACTTTTTAGACCAAATGATGCGATTTCCCTCGCTTGGAATGTTCGGTAAATTACTCG
173 AATGAAAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCG
* * * * * *
54880 AAGGAATTGATCGTCTTGAACACTTTAATGAACTGAAGCTATAAAAGAACTCGTAAAAATTTGTC
238 AAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGAC
* * * * *
54945 AATTTAAGAATTTCGTCCAAAAACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
303 AAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * ** *
55010 AAGATTAAAACTTGTTTACAAAATGAAAAAATATTTAGACCAAATGATGTGATTTTCCGGGAATG
368 AAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * * * **
55075 GATTGTTCGAAAAACTGCTAGAAGGAATGGATTGTCTTGAATACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
*
55140 AAGAACTCGTAAAAGTTT--C-----T--AAATT--T--------C-AGAGA-AAAGCAATTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAA-CAATTCTC
* * ** *
55184 ACGGAAATAAGTTTTTAATTCAAAGTCCAAAACTTGTTTACAAAAAAAAAAAACTATTTAGACCA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAATGAAAAACTTTTTAGACCA
* ** * * * * * * *
55249 AATGATACGATTTCCCTTGCACGGAATGTTCGGTAAATTACTCGAACGAATGGATCATCTCGAAC
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* ** * * * * *
55314 ACTTTAATGAACTAAAGCTATAAAAGAACTCATAAAAGTTTGTCAATTTTAGAATTTCGTCCAAG
259 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * * * *** *
55379 AACTAAGAGAGAAACAATAC-CAAAGTTATAAAAGAACCAGCAACAGTTCGGAAGTTCGTCCAAG
324 AACCAAGAGAGAAACAATTCTC-ACG---T-----AA--A--TA-AGTTTTTAA--T--TCAAAG
* *** * *** * *
55443 AACCAAGAGAGACACAATTCTCACGTAAAT-AAGTTCTTAATTTAAAGATCAAA--ACT-TG-TT
371 -ATC-A-A-A-AC-TTGTT-T-AC-AAAATGAAAAAC-T-ATTT--AGACCAAATGA-TGCGATT
* ***
55503 T-AC-AAAATG
422 TCCCTCGCATG
* * ** * * * * *
55512 AAAAACTATTTACACCAAATGATATGATTTCCCG-A-GAATGGATTGT-TCGGAAAACTGCTCGA
1 --GAA-T-GTT-C-GGAAA--AT-T-A---CTCGAAGGAATGGATCGTCT-TGAACACT--T-TA
*
55574 AGGAATGGACCGTCTTGATTACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACA
49 AGGA----A----C-TGA--A--TT-------------TATAAAAGAACTCGTAAAAGTTTGACA
* * * * * * ** *
55639 AGTTCGGAAGTTCATCCAAGAACAAAGAGAGACACAATTCTCATGTAAATAAAATTTTAATTTAA
88 AGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * * * * ***
55704 AGATCAGAATTTGTTTACAAAATGAGAAACTATTTAGACCAAATAATACGATTTCCATCGCATGG
153 AGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGG
* * ** ** **
55769 AATGTTCGCAAAATTACTCG-AGAGAATGGATCGTCTTGAACCCTTTAATTAAATGAAGCTATAA
218 AATGTTCGGAAAATTGCTCGAAG-GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGCTATAA
* ** * *
55833 ACGAACTCGTAAAAGTTTTTCAATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
282 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
55898 TGTAAACAAGTTTTTAATTCGAAGATAAAAACTTGTTTACGAAATGAAAAACTATTTAGACCAAA
347 CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
* **
55963 TGATGTGATTTCCCTTACATG
412 TGATGCGATTTCCCTCGCATG
* * * ** * **
55984 GAATGTTTGTAAAATTACTCG-AGAGAATGGATCGTCTTGAACCCTTTAATTAAATGAAGCTATA
1 GAATGTTCGGAAAATTACTCGAAG-GAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATA
* * ** * * * *
56048 AACGAACTCATAAAAGTTTTTCAA-TTTCAGAATTTCGTCCAAAAACCAAGTGAGAAACAATTCT
65 AAAGAACTCGTAAAAGTTTGACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* * ** * * *
56112 CATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACGAAATGAAAAACTATTTAGGCCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* * * * * *
56177 AATGATACGATTTCCCTCA-CATGGAATGTTTGCAAAATTACTCGAAGGAATGGTTCGTCTTGAA
194 AATGATGCGATTTCCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * * *
56241 CACTTTAATGAACAGAAGCTATAAAAGAACTCGTAAAAGTTTGTCAATTTTAGAATTTCGTCCAA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * * * * ** * * *
56306 GAAGCAAGGGAGAAATAATT-TCGAAGTTATAA-AAGAACCAGTAATAGTTCGACAAG-TTAGGA
323 GAACCAAGAGAGAAACAATTCTC-ACG-TA-AATAAG-----TTTTTAATTC-A-AAGATCA-AA
* ** * * * ** * * ** ***
56368 AGTTCGTCCA-AGAACCAAGACAGACACAATTCT-CTCGTAAAT-AAG-TTTTTAATTCAAAG-A
377 ACTT-GTTTACA-AA--ATGA-A-AAACTATT-TAGAC-CAAATGATGCGATTTCCCTC---GCA
*
56428 TCA
431 T-G
* ** * ** ** * * **** * * *
56431 AAACTTGTTTAGAAAATGA--AAAACTATTTAGA-CCAAATGATATGATTTCTCAA-GAA-TGGA
1 GAA--TGTTCGGAAAATTACTCGAAGGA-ATGGATCGTCTTGA-A-CACTT-T-AAGGAACTGAA
* * * ** * * * * *
56491 TTGATCGAAA-AACT-GCTAGAAGGAATGA-ATCGTCTT-G--TTTAGT---A-AA-TAAGTTAT
59 TTTAT-AAAAGAACTCG-TA-AAAGTTTGACA-AGT-TTGGAAGTTCGTCCAACAACCAAG--AG
* * * ** ***
56545 A-AAAGAA--CT--CGT-AA-AAGTTTGTCAATTTCAAAATTTTGTCCAAGAACCAAGAGAAACA
117 AGAAACAATTCTCACGTAAATAAGTTT-TTAA-TTC-AAA----GACCAA-AA-CTTG-TTTACA
* * * ** ** *
56603 ATTCTCACAT-AAATAAGTTTTTA-ATTCAAA-GAT-CAAATCTTGTTTAC-AAAATGAAAAACT
172 A-----A-ATGAAA-AACTTTTTAGA-CCAAATGATGC-GA---T-TTCCCGAGCATG--GAA-T
* *** **** * * *** **
56663 ATTTAAACCAAATGATGCGATTTCCCTTGCATGGAAT-GT-TCCGAAAATTACCAGAAGGAATGG
221 GTTCGGA--AAAT--TGC----TCGAAGGAATGG-ATCGTCT-TG--AA-TACTTTAAGGAACCG
* * * * * * * * *
56726 ATCGTCT-T-GAA-CACTC-TAAGGAACCGGATATAGAAAAGAACTCGTAAAAGTTTG-ACAAG-
273 A-AG-CTATAAAAGAACTCGTAA--AA---G-T-TTGACAAG--TTC--AGAAGTTCGTCCAAGA
** * * * * * * **** * * * *
56785 TTCGAGAGTTCGTCCAACAA--C-CAAG-AGAGAAACAATT-A-TC-ACG-TAAATAAGTTTTTA
325 ACCAAGAG--AG--AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAA-AA-CTTGT-
* *
56842 ATTCAAAGGCCAAAACTTGTTTATAAAGTGACAAACTTTTTAGACCAAATGATGCGACTT-CCTA
383 -TT---A---CAAAA--TG-------A---A-AAACTATTTAGACCAAATGATGCGATTTCCCT-
* * *
56906 AGAATA
427 CGCATG
* * * * * * *** * * **
56912 TAATGATCAGAAAATTGCTCGAAGGATTGGACCGTCTTGATTTCTTTATGGAACCGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * *
56977 AATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGACACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * * *
57042 CGTAAATAAGTTTTTAATTTAAAGATCAAAACTTGTCTACAAAATGAAAAA-TTATTTAGACAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTT-TTTAGACCAA
* * * * * * * *
57106 ATGATGCGATTTTCCGAGAATGGATTGTTCGAAAAACTGCTAGAACGAATGGATCGTCTTGAGTA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * * * * *
57171 CTTTAATGAACTGAAGCTATAAAAGAACTCGAAAAAAGTTTCTA-AATTTCAGAATTTCATCCAA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCG-TAAAAGTTT-GACAAGTTCAGAAGTTCGTCCAA
* *
57235 AAACCAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
323 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
* * *
57300 AAATAAAAAACTATTTAGACCAACTGATACGATTTCCCTCGCATG
388 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * **
57345 GAATGTTCGGTAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * * * * * *
57410 AAGAACTCATAAAAGTTTGTCAATTTTAGAATTTCATCCAAGAACCAAGAGGGAAACAATTATCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* ** *
57475 CGTAAATAAGTTTTTAATTGAAAGATTAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
** ** * * *
57540 TGATGCGATTTCCCTCGCATGGAATGTTCCAAAAATTACCCGAAGGAATGGATCGTCTTGAACAC
196 TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * * *
57605 TTTAAGGAACC--AGATTTAAAAACGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTACAAC
261 TTTAAGGAACCGAAGCTAT-AAAA-GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * ** *
57668 AACCAAGAGAGAAACAATTCTCATC-TCAACAAGTTTTTAATTCAAAGGCCAAAACATGTTTACA
324 AACCAAGAGAGAAACAATTCTCA-CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
** * * **
57732 AAATGACGAACTTTTTAGACCAAATGATGCGAGTTCCCAAGCATG
388 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * * * * *
57777 TAGTGTTCGAAAAATTGCTTGAAGGATTGGATCGTCTTAAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * * * *
57842 AAGAAC-CAGTAACAGTTCGACAAGTTCGGAAGTTCGTCTAAGAACTAAGAGAGACACAATTCTC
66 AAGAACTC-GTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * * *
57906 ACGTAACTAAGTTCTTAATTCAAAGATCC-AAACTTGTTTACAAAATGAAAAACTATTTACACCA
130 ACGTAAATAAGTTTTTAATTCAAAGA-CCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
** * * * * * *
57970 AATGATATGATTTCCCGAGAATGGATTGTTCGAAAAACTGCTCGAAGGAATGGACCGTCTTGATT
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAAT
* *
58035 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAG
259 ACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * ** *
58100 AACCAAGAGAGATACAATTCTCATGTAAATAAAATTTTAATTCAAAGATCAAAACTTGTGTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* *
58165 AATG--AGACTATTTAGACCAAATAATGCGACTTT-CCTCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGA-TTTCCCTCGCATG
* * ** * **
58207 GAATGTTCGCAAAATTACTCG-AGAGAATGGATCGTCTTGAACCCTTTAATTAAATGAAGCTATA
1 GAATGTTCGGAAAATTACTCGAAG-GAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATA
* * ** * * * *
58271 AACGAACTCATAAAAGTTTTTCAA-TTTCAGAATTTCGTCCAAAAACCAAGTGAGAAACAATTCT
65 AAAGAACTCGTAAAAGTTTGACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* * ** * * * *
58335 CATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACTAAATGAAAAACTATTTAGGCTA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* * * ** * *
58400 AATGATGCGATTTCCCTCA-CATGGAATGTTTGCAAAATTTTTCGAAGGAATCGATCGTCCTGAA
194 AATGATGCGATTTCCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * ** * * * *
58464 CACTTTAATGAACATAAGCTATAAAAGAACTCGTAAAAGTTTGTCAATTTTAGAATTTCGTCCAA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * * * *** * * *
58529 GAAGCATGGGAGAAACAATT-TCGATGTTATAA-AAGAACCAGTAACAGTTCGACAAGTTCGAAA
323 GAACCAAGAGAGAAACAATTCTC-ACG-TA-AATAAG---TTTTTA-A-TTC-A-AAGATCAAAA
* ** * * * * * * ** ***
58592 GTTCGTCCA-AGAACCAAGAGAGACACAATTCT-CACGTAAAT-AAG-TTTTTAATTCAAAG-AT
378 CTT-GTTTACA-AA--ATGA-A-AAACTATT-TAGAC-CAAATGATGCGATTTCCCTC---GCAT
*
58652 CA
432 -G
* ** * *** * **
58654 AAACTTGTTTAGAAAATGAAAAACTATTTAGGACAAAT-GATACG--ATG---AC-TCGA-GAA-
1 GAA--TGTTCGGAAAAT----TACT-CGAAGG---AATGGAT-CGTCTTGAACACTTTAAGGAAC
* * * * * * * ** * *
58710 TGGATTGT-TCGAAA-AACTCCTAGAAGGAATGGATC--GTCTT-GAA-TAC-TTTAATGAACTG
55 TGAATT-TAT-AAAAGAACTCGTA-AAAG-TTTGA-CAAGT-TTGGAAGTTCGTCCAA-CAAC-C
** * ** ** *
58768 AAGTTATAAA-AAAACT--CGTAAAAGTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAG
112 AAGAGAGAAACAATTCTCACGT-AAA-TAAGT---TTT--TAA-TTCA---AAG-ACC-----A-
* * * * * ** **
58830 AAACAAT-TTT-C-ACAT-AAATAAGTTTTT-GATTCAAA-GAT-CAAAACTTGTTTAC-AAAAG
159 AAAC-TTGTTTACAAAATGAAA-AACTTTTTAGA-CCAAATGATGC--GA--T-TTCCCGAGCA-
** * **
58887 TAAAAACTATTTAGACCAAATGATGCGATTTCCCTTGCATGGAATGTTCCGAAAATTACCCAAAG
215 T-GGAA-TGTTCGGA--AAAT--T--G------C-T-C---GAA-G----G--AA-T-------G
* * * *
58952 GAATGGATCGTCTTGAACACTCTAAAGAACCAGATA--TAGAAAAGAACTCGTAAAAGTTTGACA
246 GA-----TCGTCTTGAATACTTTAAGGAACC-GA-AGCTATAAAAGAACTCGTAAAAGTTTGACA
* *
59015 AGTTC-GAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCA
304 AGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
** * * * * ** * *
59079 AAGGCCAAAACTTGTTTACAAAGTGACAAACTTTTTAGACCAAATGATGCGACTTCCCAAGAATA
368 AAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * ** * **
59144 TAATGCTCAGAAAATTGCTCGAAGGATTGGACCGTCTTGATTACTTTAAGGAACCGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * ** * *
59209 AATAACTCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCA
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
* * *
59274 CGTATATAAGTTTTTAATTCAAAGATCAAAACTTGTCTACAAAATGAAAAA-TTATTTAGACC--
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTT-TTTAGACCAA
* * * * * ** *
59336 ATAATGCGATTTTCCGAGAATGGATTGTTCGAAAAACCGCTAGAAGGAATGGATCGTCTTGAATA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * * * *
59401 CTTTAATGAACTGAAGCTATAAAAGAACTCGTAAAAGTTTCTA-AATTTCAGAATTTCGTCCAAA
260 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCAGAAGTTCGTCCAAG
* *
59465 AACCAAGAGAGAAACAATTCTCACGGAATTAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
* *
59530 AATAAAAAACTATTTAGACCAAATGATACGATTTCCCTCGCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * **
59574 GAATGTTCGGTAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAACTGAAGCTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* * * * * * * * *
59639 AAGAAGTCATAAAAGTTTGTCAATTTTAGAATTTCATCCAAGAACCAAGAG-GTAAACAATTATC
66 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAG-AAACAATTCTC
* * * * *
59703 ACGTAAATATGTTTTTAATTCAAATATCAAAACTTGTTTACAAAATGAAAACCTATTTAGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAA
** ** * * * *
59768 ATGATGCGATTTCCCTCGCATGGAATGTTCCAAAAATTACCCGAAGGAATGGATCGTCTTTAACA
195 ATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATA
** * * * *
59833 CTTTAAGGAACC-ATATTTAAAAAAGAACTCGTAAAAGTTTGACAAGTTCTGAAGTTCGTACAAC
260 CTTTAAGGAACCGA-AGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * * ** *
59897 AACCAAGAGAGAAACAATTCTCATGTCAACAAGTTTTTAATTCAAAGGCCAAAACATGTTTACAA
324 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAA
** * * * ***
59962 AATGACGAACTTTTTAGACCAAATGATGTGAGTTCCCAATCATG
389 AATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
* * * * * * * *
60006 TAATGTTCAGAAAATTGCTTGAAGGATTGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
* ** * * * *
60071 AAGTAC-C--AATAA--CAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGTGAGACACAATTCTC
66 AAGAACTCGTAA-AAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTC
* * * * *
60131 ACGTAAATAAGTTCTTAATTCAACGATCC-ACACTTGTTTACAAAATGAAAAACTATTTACACCA
130 ACGTAAATAAGTTTTTAATTCAAAGA-CCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
** * * * * * *
60195 AATGATATGATTTCTCGAGAATGGATTGTTC-GAAAACCTGCTCGAAGGAATGGACCGTCTTGAT
194 AATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAA
* *
60259 TACTTTAAGGAACCAAAGCTATAAAAGAACTCGTAAAAG-TTGACAAGTTCGGAAGTTCGTCCAA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * * ** * *
60323 GAACCAAGAGATACACAATTCTCATGTAAATAAAATTTTAATTCGAAGATCAAAACTTATTTACA
323 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACA
* * * *
60388 AAATGAGAAACTATTTATACCAAATAATGCGATTTTCCTCGCATG
388 AAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
** * ** * **
60433 GAATGTTCACAAAATTACTCG-AGAGAATGGATCGTCTTGAACCCTTTAATTAAATGAAGCTATA
1 GAATGTTCGGAAAATTACTCGAAG-GAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATA
* ** * * *
60497 AACGAACTCGTAAAAGTTTTTCAA-TTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCT
65 AAAGAACTCGTAAAAGTTTGACAAGTTT-GGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCT
* * ** * * *
60561 CATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACGAAATGAAAAACTATTTAGGCCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCA
* * * * * *
60626 AATGATACGATTTCCCTCA-CATGGAATGTTTGCAAAATTACTCGAAGGAATGGTTCGTCTTGAA
194 AATGATGCGATTTCCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
* * * * * * *
60690 CACTTTAATGAACAGAAGCTATAAAAGAACTCGTAAAAGTTTGTCAATTTTAGAATTTCGTCCAA
258 TACTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * *
60755 GAAGCAAGGGAGAAATAATT
323 GAACCAAGAGAGAAACAATT
60775 TCGAAGTTAT
Statistics
Matches: 12006, Mismatches: 2150, Indels: 1258
0.78 0.14 0.08
Matches are distributed among these distances:
412 9 0.00
413 157 0.01
415 1 0.00
416 1 0.00
417 1 0.00
418 3 0.00
419 143 0.01
420 111 0.01
421 95 0.01
423 1 0.00
424 3 0.00
425 5 0.00
426 113 0.01
427 415 0.03
428 209 0.02
429 72 0.01
430 1249 0.10
431 2356 0.20
432 4597 0.38
433 316 0.03
434 17 0.00
435 7 0.00
436 6 0.00
437 10 0.00
438 29 0.00
439 22 0.00
440 20 0.00
441 13 0.00
442 11 0.00
443 18 0.00
444 16 0.00
445 27 0.00
446 29 0.00
447 18 0.00
448 41 0.00
449 65 0.01
450 44 0.00
451 82 0.01
452 603 0.05
453 23 0.00
454 26 0.00
455 16 0.00
456 13 0.00
457 10 0.00
458 20 0.00
459 19 0.00
460 5 0.00
461 32 0.00
462 11 0.00
463 16 0.00
464 5 0.00
465 15 0.00
466 16 0.00
467 28 0.00
468 13 0.00
469 26 0.00
470 32 0.00
471 16 0.00
472 23 0.00
473 11 0.00
474 27 0.00
475 21 0.00
476 5 0.00
477 30 0.00
478 26 0.00
479 40 0.00
480 16 0.00
481 22 0.00
482 16 0.00
483 28 0.00
484 11 0.00
485 12 0.00
486 14 0.00
487 24 0.00
488 41 0.00
489 10 0.00
490 14 0.00
491 7 0.00
492 11 0.00
493 4 0.00
494 2 0.00
495 1 0.00
496 156 0.01
497 56 0.00
498 3 0.00
499 3 0.00
500 3 0.00
501 2 0.00
503 2 0.00
504 6 0.00
505 78 0.01
506 3 0.00
507 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (432 bp):
GAATGTTCGGAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAAGGAACTGAATTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAACTTTTTAGACCAAA
TGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
TTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA
CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAA
TGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCGCATG
Found at i:54098 original size:236 final size:221
Alignment explanation
Indices: 53920--55396 Score: 1327
Period size: 216 Copynumber: 6.8 Consensus size: 221
53910 AAATATTCAT
* * *
53920 CTTGTTTACAAAATAAAAAACTTTTTAGACCAAATGATGCAATTTCCCTCGCATGGAATGTTCGG
1 CTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGG
* * * * *
53985 TAAATTACTCGAAGGAATTAATCATCTTGAACGCTTTAATGAGCAGAAGCTATAAAAGAACTCGT
66 AAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAACAGAAGCTATAAAAGAACTCGT
* * * *
54050 AAAAGTTTGTCAATTTCAGAATTTTGTCCAAGAACCAAGAGGGAAACAATTTTCACGTAAATAAG
131 AAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAG
54115 TTTTTAATTC-AA-AGA-TC-AAA-A
196 TTTTTAATTCAAAGAGACTCAAAACA
* * * *
54136 CTTGTTTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCTCGCATGGAATGTTC-C
1 CTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGG
* * ** * *
54200 AAAACTTACCCGAAGGAATGAATCGTCTTGAACACTTTAAGGAACCA-AATTTAAAAAAGAACAC
66 AAAA-TTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAA-CAGAAGCTATAAAAGAACTC
* * * * * * * **
54264 GTTAAAGTTTGACAAGTTCGGAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTCAGCA
129 GTAAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATA
54329 AGTTTTTAATTCAAAG-G-C-CAAAACA
194 AGTTTTTAATTCAAAGAGACTCAAAACA
* * * * * * *
54354 --TGTTTACAAAATGACAAACTTTTTAGACCAAATGATGAGAGTTCCCAAGCATGTAATGTTCGG
1 CTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGG
* * * * * * *
54417 AAAATTGCTTGAAGGACTGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAAC-CA
66 AAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAA-CAGAAGCTATAAAAGAACTC-
* * * * * * *
54480 GTAACAGTTTGACAAATTC-GAAAGTTCGTCCAAGAA-CAAGGAGAGACACAATTATCACGTAAA
129 GTAAAAGTTTGTCAATTTCAG-AATTTCGTCCAAAAACCAA-GAGAGAAACAATTCTCACGTAAA
54543 TAAGTTTTTAATTC-AA-AGA-TC-AAA-A
192 TAAGTTTTTAATTCAAAGAGACTCAAAACA
* * * * * *
54568 CTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCTATTTCTCGAGAAT-GAATTGTTAG
1 CTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAA-TGTTCG
* * * * * * * * * *
54632 AAAAACTGCTAGAATGAATGAATCGTCTTGAATACTTTAATTAACTGAATCTATAAAAGAACTTG
65 GAAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAACAGAAGCTATAAAAGAACTCG
* * *
54697 TAAAAGTTTGTAAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAATAATTCTCACGTTAATAA
130 TAAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAA
54762 GTTTTTAATTCAAAGATGAAAACTTGTTTACAAAATATTCA
195 GTTTTTAATTCAAAGA-G---AC-----T-C-AAA-A--CA
* * * *
54803 TATTGTTTACAAAATAAAAAACTTTTTAGACCAAATGATGCGATTTCCCTCGCTTGGAATGTTCG
1 -CTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCG
* *
54868 GTAAATTACTCGAAGGAATTG-ATCGTCTTGAACACTTTAATGAACTGAAGCTATAAAAGAACTC
65 GAAAATTACTCGAAGGAA-TGAATCGTCTTGAACACTTTAATGAACAGAAGCTATAAAAGAACTC
* * *
54932 GTAAAAATTTGTCAATTTAAGAATTTCGTCCAAAAACCAAGAGGGAAACAATTCTCACGTAAATA
129 GTAAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATA
*
54997 AGTTTTTAATTC-AA-AGA-T-TAAA-A
194 AGTTTTTAATTCAAAGAGACTCAAAACA
* * ** * *
55020 CTTGTTTACAAAATGAAAAAA-TATTTAGACCAAATGATGTGATTTTCCGGGAATGGATTGTTCG
1 CTTGTTTACAAAAT-AAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCG
* * * * * * * *
55084 AAAAACTGCTAGAAGGAATGGATTGTCTTGAATACTTTAATGAACTGAAGCTATAAAAGAACTCG
65 GAAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAACAGAAGCTATAAAAGAACTCG
* * *
55149 TAAAAG-TT-TC----T-A-AA-TT--T--------C-AGAGAAAAGCAATTCTCACGGAAATAA
130 TAAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAA
*
55194 GTTTTTAATTC-AA-AG--TCCAAA-A
195 GTTTTTAATTCAAAGAGACTCAAAACA
* * * *
55216 CTTGTTTACAAAAAAAAAAAACTATTTAGACCAAATGATACGATTTCCCTTGCACGGAATGTTCG
1 CTTGTTTAC-AAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCG
* * * * *
55281 GTAAATTACTCGAACGAATGGATCATCTCGAACACTTTAATGAACTA-AAGCTATAAAAGAACTC
65 GAAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAAC-AGAAGCTATAAAAGAACTC
* * * *
55345 ATAAAAGTTTGTCAATTTTAGAATTTCGTCCAAGAACTAAGAGAGAAACAAT
129 GTAAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAAT
55397 ACCAAAGTTA
Statistics
Matches: 1033, Mismatches: 159, Indels: 137
0.78 0.12 0.10
Matches are distributed among these distances:
195 1 0.00
196 57 0.06
197 98 0.09
198 2 0.00
199 2 0.00
203 1 0.00
204 1 0.00
205 3 0.00
206 2 0.00
207 2 0.00
208 3 0.00
209 1 0.00
210 1 0.00
214 3 0.00
215 21 0.02
216 603 0.58
217 36 0.03
218 2 0.00
219 1 0.00
220 1 0.00
221 2 0.00
222 1 0.00
224 1 0.00
228 1 0.00
229 1 0.00
230 1 0.00
231 2 0.00
232 1 0.00
233 1 0.00
234 1 0.00
235 3 0.00
236 172 0.17
237 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (221 bp):
CTTGTTTACAAAATAAAAAACTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGG
AAAATTACTCGAAGGAATGAATCGTCTTGAACACTTTAATGAACAGAAGCTATAAAAGAACTCGT
AAAAGTTTGTCAATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAG
TTTTTAATTCAAAGAGACTCAAAACA
Found at i:55338 original size:197 final size:196
Alignment explanation
Indices: 54980--55354 Score: 509
Period size: 197 Copynumber: 1.9 Consensus size: 196
54970 AAGAGGGAAA
* * **
54980 CAATTCTCACGTAAATAAGTTTTTAATTCAAAGATTAAAACTTGTTTACAAAATGAAAAAATATT
1 CAATTCTCACGGAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAAAAAAAAAATATT
** * * * * * **
55045 TAGACCAAATGATGTGATTTTCCGGGAATGGATTGTTCGAAAAACTGCTAGAAGGAATGGATTGT
66 TAGACCAAATGATACGATTTCCCGGGAACGGAATGTTCGAAAAACTACTAGAACGAATGGATCAT
* * * *
55110 CTTGAATACTTTAATGAACTGAAGCTATAAAAGAACTCGTAAAAGTTTCTAAATTTCAGAGAAAA
131 CTCGAACACTTTAATGAACTAAAGCTATAAAAGAACTCATAAAAGTTTCTAAATTTCAGAGAAAA
55175 G
196 G
55176 CAATTCTCACGGAAATAAGTTTTTAATTCAAAG-TCCAAAACTTGTTTACAAAAAAAAAAAACTA
1 CAATTCTCACGGAAATAAGTTTTTAATTCAAAGAT-CAAAACTTGTTTACAAAAAAAAAAAA-TA
** * ** * *
55240 TTTAGACCAAATGATACGATTTCCCTTGCACGGAATGTTCGGTAAATTACTCGAACGAATGGATC
64 TTTAGACCAAATGATACGATTTCCCGGGAACGGAATGTTCGAAAAACTACTAGAACGAATGGATC
55305 ATCTCGAACACTTTAATGAACTAAAGCTATAAAAGAACTCATAAAAGTTT
129 ATCTCGAACACTTTAATGAACTAAAGCTATAAAAGAACTCATAAAAGTTT
55355 GTCAATTTTA
Statistics
Matches: 153, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 55 0.36
197 97 0.63
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (196 bp):
CAATTCTCACGGAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAAAAAAAAAATATT
TAGACCAAATGATACGATTTCCCGGGAACGGAATGTTCGAAAAACTACTAGAACGAATGGATCAT
CTCGAACACTTTAATGAACTAAAGCTATAAAAGAACTCATAAAAGTTTCTAAATTTCAGAGAAAA
G
Found at i:55798 original size:216 final size:216
Alignment explanation
Indices: 55423--56325 Score: 1094
Period size: 216 Copynumber: 4.2 Consensus size: 216
55413 AACCAGCAAC
* * * * * *
55423 AGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAATTCTCACGTAAATAAGTTCTTAATTTAA
1 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAATTTTTAATTCAA
* * * * *
55488 AGATCAAAACTTGTTTACAAAATGAAAAACTATTTACACCAAATGATATGATTTCCC-GAGAATG
66 AGATAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCA-CATG
* * * * * ** * **
55552 GATTGTTCGGAAAACTGCTCGAAGGAATGGACCGTCTTGATTACTTTAAGGAACCGAAGCTATAA
130 GAATGTTCGCAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAAATGAAGCTATAA
***
55617 AAGAACTCGTAAAAGTTCGACA
195 AAGAACTCGTAAAAGTTTTTCA
* * * * * *
55639 AGTTCGGAAGTTCATCCAAGAACAAAGAGAGACACAATTCTCATGTAAATAAAATTTTAATTTAA
1 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAATTTTTAATTCAA
* * * * * * *
55704 AGATCAGAATTTGTTTACAAAATGAGAAACTATTTAGACCAAATAATACGATTTCCATCGCATGG
66 AGATAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCACATGG
* *
55769 AATGTTCGCAAAATTACTCG-AGAGAATGGATCGTCTTGAACCCTTTAATTAAATGAAGCTATAA
131 AATGTTCGCAAAATTACTCGAAG-GAATGGATCGTCTTGAACACTTTAATGAAATGAAGCTATAA
*
55833 ACGAACTCGTAAAAGTTTTTCA
195 AAGAACTCGTAAAAGTTTTTCA
* * * * *
55855 ATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAACAAGTTTTTAATTCGA
1 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAATTTTTAATTCAA
* ** *
55920 AGATAAAAACTTGTTTACGAAATGAAAAACTATTTAGACCAAATGATGTGATTTCCCTTACATGG
66 AGATAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCACATGG
* * * *
55985 AATGTTTGTAAAATTACTCG-AGAGAATGGATCGTCTTGAACCCTTTAATTAAATGAAGCTATAA
131 AATGTTCGCAAAATTACTCGAAG-GAATGGATCGTCTTGAACACTTTAATGAAATGAAGCTATAA
* *
56049 ACGAACTCATAAAAGTTTTTCA
195 AAGAACTCGTAAAAGTTTTTCA
* * * * * *
56071 ATTTCAGAATTTCGTCCAAAAACCAAGTGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCGA
1 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAATTTTTAATTCAA
* *
56136 AGATAAAAACTTGTTTACGAAATGAAAAACTATTTAGGCCAAATGATACGATTTCCCTCACATGG
66 AGATAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCACATGG
* *
56201 AATGTTTGCAAAATTACTCGAAGGAATGGTTCGTCTTGAACACTTTAATGAACA-GAAGCTATAA
131 AATGTTCGCAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAA-ATGAAGCTATAA
*
56265 AAGAACTCGTAAAAGTTTGTCA
195 AAGAACTCGTAAAAGTTTTTCA
* * * * * *
56287 ATTTTAGAATTTCGTCCAAGAAGCAAGGGAGAAATAATT
1 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
56326 TCGAAGTTAT
Statistics
Matches: 607, Mismatches: 76, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
215 2 0.00
216 602 0.99
217 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (216 bp):
AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAATTTTTAATTCAA
AGATAAAAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCACATGG
AATGTTCGCAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAAATGAAGCTATAAA
AGAACTCGTAAAAGTTTTTCA
Found at i:56891 original size:216 final size:215
Alignment explanation
Indices: 56327--58548 Score: 2323
Period size: 216 Copynumber: 10.3 Consensus size: 215
56317 GAAATAATTT
* * * * *
56327 CGAAGTTATAAAAGAAC-CAGTAATAGTTCGACAAGTTAGGAAGTTCGTCCAAGAACCAAGACAG
1 CGAAGCTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * *
56391 ACACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATGAAAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACT
** * * * * * * * *
56456 ATTTAGACCAAATGATATGATTTCTCAAGAATGGATTGATCGAAAAACTGCTAGAAGGAATGAAT
130 ATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGC-CGAAGGAATGGAT
*
56521 CGTCTTG-----TTT-AGTAA-
194 CGTCTTGAACACTTTAAGGAAC
** * * * ** * *
56536 ATAAGTTATAAAAGAACTCGTAAAAGTTTGTCAATTTCAAAATTTTGTCCAAGAACC-A-AGAGA
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* *
56599 AACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAATCTTGTTTACAAAATGAAAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * *
56664 TTTAAACCAAATGATGCGATTTCCCTTGCATGGAATGTTCCG-AAAATTACCAGAAGGAATGGAT
131 TTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTT-CGAAAAATTGCC-GAAGGAATGGAT
*
56728 CGTCTTGAACACTCTAAGGAAC
194 CGTCTTGAACACTTTAAGGAAC
* ** * *
56750 CGGATATAGAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAGAGTTCGTCCAACAACCAAGAGAG
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAG
* ** * * *
56814 AAACAATTATCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTATAAAGTGACAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACT
* * * ** * *
56879 TTTTAGACCAAATGATGCGACTT-CCTAAGAATATAATGATC-AGAAAATTGCTCGAAGGATTGG
130 ATTTAGACCAAATGATGCGATTTCCCT-AGCATGGAATGTTCGA-AAAATTGC-CGAAGGAATGG
* *** *
56942 ACCGTCTTGATTTCTTTATGGAAC
192 ATCGTCTTGAACACTTTAAGGAAC
* *
56966 CGAAGCTATAAAATAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGA
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * * *
57031 CACAATTCTCACGTAAATAAGTTTTTAATTTAAAGATCAAAACTTGTCTACAAAATGAAAAATTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * * * * * * *
57096 TTTAGACAAAATGATGCGATTTTCCGAGAATGGATTGTTCGAAAAACTGCTAGAACGAATGGATC
131 TTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGC-CGAAGGAATGGATC
** *
57161 GTCTTGAGTACTTTAATGAAC
195 GTCTTGAACACTTTAAGGAAC
* * * * * * * *
57182 TGAAGCTATAAAAGAACTCGAAAAAAGTTTCTA-AATTTCAGAATTTCATCCAAAAACCAAGAGA
1 CGAAGCTATAAAAGAACTCG-TAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* *
57246 GAAACAATTCTCACGGAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAAC
64 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAAC
* * * ** *
57311 TATTTAGACCAACTGATACGATTTCCCTCGCATGGAATGTTCGGTAAATTACTCGAAGGAATGGA
129 TATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGC-CGAAGGAATGGA
*
57376 TCGTCTTGAACACTTTAATGAAC
193 TCGTCTTGAACACTTTAAGGAAC
* * * * ** * * *
57399 TGAAGCTATAAAAGAACTCATAAAAGTTTGTCAATTTTAGAATTTCATCCAAGAACCAAGAGGGA
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * *
57464 AACAATTATCACGTAAATAAGTTTTTAATTGAAAGATTAAAACTTGTTTACAAAATGAAAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * *
57529 TTTAGACCAAATGATGCGATTTCCCTCGCATGGAATGTTCCAAAAATTACCCGAAGGAATGGATC
131 TTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATT-GCCGAAGGAATGGATC
57594 GTCTTGAACACTTTAAGGAAC
195 GTCTTGAACACTTTAAGGAAC
* * * *
57615 C--AGATTTAAAAACGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTACAACAACCAAGAGA
1 CGAAGCTAT-AAAA-GAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * ** * **
57678 GAAACAATTCTCATC-TCAACAAGTTTTTAATTCAAAGGCCAAAACATGTTTACAAAATGACGAA
64 GAAACAATTCTCA-CGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAA
* * * * * * *
57742 CTTTTTAGACCAAATGATGCGAGTTCCCAAGCATGTAGTGTTCGAAAAATTGCTTGAAGGATTGG
128 CTATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGC-CGAAGGAATGG
* *
57807 ATCGTCTTAAATACTTTAAGGAAC
192 ATCGTCTTGAACACTTTAAGGAAC
* * * * *
57831 CGAAGTTATAAAAGAAC-CAGTAACAGTTCGACAAGTTCGGAAGTTCGTCTAAGAACTAAGAGAG
1 CGAAGCTATAAAAGAACTC-GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG
* * * *
57895 ACACAATTCTCACGTAACTAAGTTCTTAATTCAAAGATCCAAACTTGTTTACAAAATGAAAAACT
65 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACT
* ** * * * * *
57960 ATTTACACCAAATGATATGATTTCCCGAGAATGGATTGTTCGAAAAACTGCTCGAAGGAATGGAC
130 ATTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGC-CGAAGGAATGGAT
**
58025 CGTCTTGATTACTTTAAGGAAC
194 CGTCTTGAACACTTTAAGGAAC
*
58047 CGAAGCTATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * ** * *
58112 TACAATTCTCATGTAAATAAAATTTTAATTCAAAGATCAAAACTTGTGTACAAAATG--AGACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * * *
58175 TTTAGACCAAATAATGCGACTTT-CCTCGCATGGAATGTTCGCAAAATTACTCG-AGAGAATGGA
131 TTTAGACCAAATGATGCGA-TTTCCCTAGCATGGAATGTTCGAAAAATTGC-CGAAG-GAATGGA
* ** *
58238 TCGTCTTGAACCCTTTAATTAAA
193 TCGTCTTGAACACTTTAAGGAAC
* * * ** * * * * *
58261 TGAAGCTATAAACGAACTCATAAAAGTTTTTCAATTTCAGAATTTCGTCCAAAAACCAAGTGAGA
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * * *
58326 AACAATTCTCATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACTAAATGAAAAACTA
66 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * * * ** *
58391 TTTAGGCTAAATGATGCGATTTCCCTCA-CATGGAATGTTTGCAAAATTTTTCGAAGGAATCGAT
131 TTTAGACCAAATGATGCGATTTCCCT-AGCATGGAATGTTCG-AAAAATTGCCGAAGGAATGGAT
* *
58455 CGTCCTGAACACTTTAATGAAC
194 CGTCTTGAACACTTTAAGGAAC
** * * ** * * * *
58477 ATAAGCTATAAAAGAACTCGTAAAAGTTTGTCAATTTTAGAATTTCGTCCAAGAAGCATGGGAGA
1 CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
58542 AACAATT
66 AACAATT
58549 TCGATGTTAT
Statistics
Matches: 1678, Mismatches: 294, Indels: 75
0.82 0.14 0.04
Matches are distributed among these distances:
207 118 0.07
208 3 0.00
209 44 0.03
210 1 0.00
212 2 0.00
213 7 0.00
214 217 0.13
215 18 0.01
216 1058 0.63
217 205 0.12
218 5 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (215 bp):
CGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
TTTAGACCAAATGATGCGATTTCCCTAGCATGGAATGTTCGAAAAATTGCCGAAGGAATGGATCG
TCTTGAACACTTTAAGGAAC
Found at i:58955 original size:216 final size:216
Alignment explanation
Indices: 58556--60774 Score: 2427
Period size: 216 Copynumber: 10.3 Consensus size: 216
58546 ATTTCGATGT
* * *
58556 TATAAAAGAAC-CAGTAACAGTTCGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGACACA
1 TATAAAAGAACTC-GTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACA
*
58619 ATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATGAAAAACTATTTA
64 ATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTA
* ** * * * * * * *
58684 GGA-CAAATGATACGATGACTCGAGAATGGATTGTT-CGAAAAACTCCTAGAAGGAATGGATCGT
129 -GACCAAATGATGCGATTTCCCTAGCATGGAATGTTCCG-AAAATTACTCGAAGGAATGGATCGT
* *
58747 CTTGAATACTTTAATGAACTGAAGT
192 CTTGAACACTTTAATGAACTGAAGC
* * * * *
58772 TATAAAAAAACTCGTAAAAGTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAAT
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * *
58837 TTTCACATAAATAAGTTTTTGATTCAAAGATCAAAACTTGTTTACAAAA-GTAAAAACTATTTAG
66 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATG-AAAAACTATTTAG
* * *
58901 ACCAAATGATGCGATTTCCCTTGCATGGAATGTTCCGAAAATTACCCAAAGGAATGGATCGTCTT
130 ACCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTT
* * *
58966 GAACACTCTAAAGAACCAGATA--
195 GAACACTTTAATGAA-CTGA-AGC
* *
58988 TAGAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCCAACAACCAAGAGAGAAACAA
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAA
* ** * * *
59052 TTCTCATGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGACAAACTTTTTAG
65 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* * * ** * * * * *
59117 ACCAAATGATGCGACTTCCCAAGAATATAATGCTCAGAAAATTGCTCGAAGGATTGGACCGTCTT
130 ACCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTT
** * *
59182 GATTACTTTAAGGAACCGAAGC
195 GAACACTTTAATGAACTGAAGC
* * *
59204 TATAAAATAACTCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGACACAAT
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * *
59269 TCTCACGTATATAAGTTTTTAATTCAAAGATCAAAACTTGTCTACAAAATGAAAAATTATTTAGA
66 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * *** *
59334 CC--ATAATGCGATTTTCCGAGAATGGATTGTT-CGAAAAACCGCTAGAAGGAATGGATCGTCTT
131 CCAAATGATGCGATTTCCCTAGCATGGAATGTTCCG-AAAATTACTCGAAGGAATGGATCGTCTT
*
59396 GAATACTTTAATGAACTGAAGC
195 GAACACTTTAATGAACTGAAGC
* * * *
59418 TATAAAAGAACTCGTAAAAGTTTCTA-AATTTCAGAATTTCGTCCAAAAACCAAGAGAGAAACAA
1 TATAAAAGAACTCGTAAAAGTTT-GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* * *
59482 TTCTCACGGAATTAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATAAAAAACTATTTAG
65 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* * * *
59547 ACCAAATGATACGATTTCCCTCGCATGGAATGTTCGGTAAATTACTCGAAGGAATGGATCGTCTT
130 ACCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTT
59612 GAACACTTTAATGAACTGAAGC
195 GAACACTTTAATGAACTGAAGC
* * * * * * *
59634 TATAAAAGAAGTCATAAAAGTTTGTCAATTTTAGAATTTCATCCAAGAACCAAGAG-GTAAACAA
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AAACAA
* * * *
59698 TTATCACGTAAATATGTTTTTAATTCAAATATCAAAACTTGTTTACAAAATGAAAACCTATTTAG
65 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* * *
59763 ACCAAATGATGCGATTTCCCTCGCATGGAATGTTCCAAAAATTACCCGAAGGAATGGATCGTCTT
130 ACCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTT
* * * **
59828 TAACACTTTAAGGAAC-CATATT
195 GAACACTTTAATGAACTGA-AGC
* * * *
59850 TAAAAAAGAACTCGTAAAAGTTTGACAAGTTCTGAAGTTCGTACAACAACCAAGAGAGAAACAAT
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * * ** * ** *
59915 TCTCATGTCAACAAGTTTTTAATTCAAAGGCCAAAACATGTTTACAAAATGACGAACTTTTTAGA
66 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
* * * * * * * * *
59980 CCAAATGATGTGAGTTCCCAATCATGTAATGTTCAGAAAATTGCTTGAAGGATTGGATCGTCTTG
131 CCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTG
* * * *
60045 AATACTTTAAGGAACCGAAGT
196 AACACTTTAATGAACTGAAGC
* ** * * *
60066 TATAAAAGTAC-C--AATAA--CAGACAAGTTCGGAAGTTCGTCCAAGAACCAAGTGAGACACAA
1 TATAAAAGAACTCGTAA-AAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* * * * *
60126 TTCTCACGTAAATAAGTTCTTAATTCAACGATCCACACTTGTTTACAAAATGAAAAACTATTTAC
65 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
** * * * * * * *
60191 ACCAAATGATATGATTTCTCGAGAATGGATTGTT-CGAAAACCTGCTCGAAGGAATGGACCGTCT
130 ACCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAA-TTACTCGAAGGAATGGATCGTCT
** * **
60255 TGATTACTTTAAGGAACCAAAGC
194 TGAACACTTTAATGAACTGAAGC
* * *
60278 TATAAAAGAACTCGTAAAAG-TTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGATACACAAT
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* ** * * * *
60342 TCTCATGTAAATAAAATTTTAATTCGAAGATCAAAACTTATTTACAAAATGAGAAACTATTTATA
66 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
* * *
60407 CCAAATAATGCGATTTTCCTCGCATGGAATGTTCAC-AAAATTACTCG-AGAGAATGGATCGTCT
131 CCAAATGATGCGATTTCCCTAGCATGGAATGTTC-CGAAAATTACTCGAAG-GAATGGATCGTCT
* * *
60470 TGAACCCTTTAATTAAATGAAGC
194 TGAACACTTTAATGAACTGAAGC
* ** * *
60493 TATAAACGAACTCGTAAAAGTTTTTCAATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAAT
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
* * * * *
60558 TCTCATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACGAAATGAAAAACTATTTAGG
66 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
* * *
60623 CCAAATGATACGATTTCCCTCA-CATGGAATGTT-TGCAAAATTACTCGAAGGAATGGTTCGTCT
131 CCAAATGATGCGATTTCCCT-AGCATGGAATGTTCCG-AAAATTACTCGAAGGAATGGATCGTCT
*
60686 TGAACACTTTAATGAACAGAAGC
194 TGAACACTTTAATGAACTGAAGC
* * * * * * *
60709 TATAAAAGAACTCGTAAAAGTTTGTCAATTTTAGAATTTCGTCCAAGAAGCAAGGGAGAAATAAT
1 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
60774 T
66 T
60775 TCGAAGTTAT
Statistics
Matches: 1675, Mismatches: 292, Indels: 72
0.82 0.14 0.04
Matches are distributed among these distances:
211 5 0.00
212 162 0.10
213 4 0.00
214 187 0.11
215 182 0.11
216 1119 0.67
217 15 0.01
218 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (216 bp):
TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
CCAAATGATGCGATTTCCCTAGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTG
AACACTTTAATGAACTGAAGC
Found at i:61180 original size:216 final size:216
Alignment explanation
Indices: 60777--61658 Score: 1058
Period size: 216 Copynumber: 4.1 Consensus size: 216
60767 AAATAATTTC
* * *
60777 GAAGTTATAAAAGAAC-CAGTAATAGTTCGACAAGTT-AGGAAGTTCGTCCAAGAACCAAGACAG
1 GAAGTTATAAAAGAACTC-GTAAAAGTTCGACAAGTTCA-GAAGTTCATCCAAGAACCAAGAGAG
* * *
60840 ACACAATTCTCTCGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATGAAAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACT
* * *
60905 ATTTAGACCAAATGATACGATTTCTCGAGAATGGATTGTTCGAAAAATTGCTAGAAGGAATGGAT
129 ATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTAGAAGGAATGGAT
*
60970 CGTCTTGAATACTTTAATGAACT
194 CGTCTTGAATACTTTAAGGAACT
* * * *
60993 GAAGTTATAAAAGAACTCGTAAAAGTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAA
* *
61058 ACAATTCTCACGTAAATAAGTTTTTAATTCAGAGATCAAAACTTGTTTACAAAATGACAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
** * * **
61123 TTAGACCAAATGATGCGATTTCCCTTGCATGGAATGTTTCG-AAAATTACCCGAAGGAATGGATC
131 TTAGACCAAATGATGCGATTTCCCGAGAATGGAATG-TTCGAAAAATTGCTAGAAGGAATGGATC
* * * *
61187 TTCTTGAACAATCTAAGGAAC-
195 GTCTTGAATACTTTAAGGAACT
* * * * * * * *
61208 CAAATATAGAAAAGAACTCGTAAAATTTTGACAAGTTC-GAAAGTTCGTCCCACAACCAAGAGAG
1 GAAGT-TATAAAAGAACTCGTAAAAGTTCGACAAGTTCAG-AAGTTCATCCAAGAACCAAGAGAG
** * *
61272 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGTTTACAAAGTGACAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACT
* * ** ** * *
61337 TTTTAGACCAAATGATGCGACTTCCTAAGAATATAATGTTC-AGAAAATTGCTCGAAGGATTGGA
129 ATTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGA-AAAATTGCTAGAAGGAATGGA
* * *
61401 CCGTCTTGATTACTTTAAGGAACC
193 TCGTCTTGAATACTTTAAGGAACT
* * * * * * *
61425 GAAGCTATAAAATAACTCATAAAAGTTCG-CAAAGTTCGGAAGTTTATCCAAGAATCAAGAGGGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTCGAC-AAGTTCAGAAGTTCATCCAAGAACCAAGAGAGA
* * * * *
61489 CACAATTCTTACGTAAATAAGTTTTTAATTTAAAGATCAAAACTTGTCTACAAAATGAAAAATTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * *
61554 TTTAGACCAAATGATGCGATTTTCCGAGAATGGATTGTTCGAAAAACTGCTAGAAGGAATGGATC
130 TTTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATC
*
61619 GTCTTGAATACTTTAATGAACT
195 GTCTTGAATACTTTAAGGAACT
*
61641 GAAGCTATAAAAGAACTC
1 GAAGTTATAAAAGAACTC
61659 NNNNNNNNNN
Statistics
Matches: 559, Mismatches: 96, Indels: 22
0.83 0.14 0.03
Matches are distributed among these distances:
215 8 0.01
216 541 0.97
217 10 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (216 bp):
GAAGTTATAAAAGAACTCGTAAAAGTTCGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAA
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTAT
TTAGACCAAATGATGCGATTTCCCGAGAATGGAATGTTCGAAAAATTGCTAGAAGGAATGGATCG
TCTTGAATACTTTAAGGAACT
Found at i:61477 original size:721 final size:720
Alignment explanation
Indices: 60085--61483 Score: 1846
Period size: 721 Copynumber: 1.9 Consensus size: 720
60075 ACCAATAACA
* **
60085 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGTGAGACACAATTCTCACGTAAATAAGTTCTTAAT
1 GACAAGTTAGGAAGTTCGTCCAAGAACCAAGACAGACACAATTCTCACGTAAATAAGTTCTTAAT
* * * *
60150 TCAACGATCCACACTTGTTTACAAAATGAAAAACTATTTACACCAAATGATATGATTTCTCGAGA
66 TCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACACCAAATGATACGATTTCTCGAGA
* * *
60215 ATGGATTGTTCGAAAACCTGCTCGAAGGAATGGACCGTCTTGATTACTTTAAGGAACCAAAGCTA
131 ATGGATTGTTCGAAAAACTGCTAGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGCTA
* * * *
60280 TAAAAGAACTCGTAAAAGTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGATACACAATTCT
196 TAAAAGAACTCGTAAAAGTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * *
60345 CATGTAAATAAAATTTTAATTCGAAGATCAAAACTTATTTACAAAATGAGAAACTATTTATACCA
261 CACGTAAATAAAATTTTAATTCGAAGATCAAAACTTATTTACAAAATGACAAACTATTTAGACCA
* *
60410 AATAATGCGATTTTCCTCGCATGGAATGTTCACAAAATTACTCGAGAGAATGGATCGTCTTGAAC
326 AATAATGCGATTTCCCTCGCATGGAATGTTCACAAAATTACCCGAGAGAATGGATCGTCTTGAAC
** * ** ** * * * * * * *
60475 CCTTTAATTAAATGAAGCTATAAACGAACTCGTAAAAGTTTTTCAATTTCAGAATTTCGTCCAAG
391 AATCTAAGGAAACAAAGATAGAAAAGAACTCGTAAAAGTTTTACAAGTTCAGAAGTTCGTCCAAC
* * *
60540 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACGA
456 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACGA
* * * * * *
60605 AATGAAAAACTATTTAGGCCAAATGATACGATTTCCCTCACATGGAATGTTTGCAAAATTACTCG
521 AATGAAAAACTATTTAGACCAAATGATACGACTTCCCTAAAATAGAATGTTAGCAAAATTACTCG
** * * *
60670 AAGGAATGGTTCGTCTTGAACACTTTAATGAACAGAAGCTATAAAAGAACTCGTAAAAGTTTGTC
586 AAGGAATGGACCGTCTTGAACACTTTAAGGAACAGAAGCTATAAAAGAACTCATAAAAGTTCGTC
* * *
60735 AATTTTAGAATTTCGTCCAAGAAGCAAGGGAGAAATAATTTCGAAGTTATAAAAGAACCAGTAAT
651 AAGTTCAGAATTTCATCCAAGAAGCAAGGGAGAAATAATTTCGAAGTTATAAAAGAACCAGTAAT
60800 AGTTC
716 AGTTC
* *
60805 GACAAGTTAGGAAGTTCGTCCAAGAACCAAGACAGACACAATTCTCTCGTAAATAAGTTTTTAAT
1 GACAAGTTAGGAAGTTCGTCCAAGAACCAAGACAGACACAATTCTCACGTAAATAAGTTCTTAAT
* *
60870 TCAAAGATCAAAACTTGTTTAGAAAATGAAAAACTATTTAGACCAAATGATACGATTTCTCGAGA
66 TCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACACCAAATGATACGATTTCTCGAGA
* * * ** *
60935 ATGGATTGTTCGAAAAATTGCTAGAAGGAATGGATCGTCTTGAATACTTTAATGAACTGAAGTTA
131 ATGGATTGTTCGAAAAACTGCTAGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGCTA
* * *
61000 TAAAAGAACTCGTAAAAGTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATTC
196 TAAAAGAACTCGTAAAAG-TTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
** *
61065 TCACGTAAATAAGTTTTTAATTC-AGAGATCAAAACTTGTTTACAAAATGACAAACTATTTAGAC
260 TCACGTAAATAAAATTTTAATTCGA-AGATCAAAACTTATTTACAAAATGACAAACTATTTAGAC
* * * *
61129 CAAATGATGCGATTTCCCTTGCATGGAATGTTTC-GAAAATTACCCGA-AGGAATGGATCTTCTT
324 CAAATAATGCGATTTCCCTCGCATGGAATG-TTCACAAAATTACCCGAGA-GAATGGATCGTCTT
* *
61192 GAACAATCTAAGGAACCAAATATAGAAAAGAACTCGTAAAA-TTTTGACAAGTTC-GAAAGTTCG
387 GAACAATCTAAGGAAACAAAGATAGAAAAGAACTCGTAAAAGTTTT-ACAAGTTCAG-AAGTTCG
* * *
61255 TCCCACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAACTTGT
450 TCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGT
* * * *
61320 TTAC-AAAGTGACAAACTTTTTAGACCAAATGATGCGACTT-CCTAAGAATATAATGTTCAG-AA
515 TTACGAAA-TGAAAAACTATTTAGACCAAATGATACGACTTCCCTAA-AATAGAATGTT-AGCAA
* * ** * *
61382 AATTGCTCGAAGGATTGGACCGTCTTGATTACTTTAAGGAACCGAAGCTATAAAATAACTCATAA
577 AATTACTCGAAGGAATGGACCGTCTTGAACACTTTAAGGAACAGAAGCTATAAAAGAACTCATAA
* *
61447 AAGTTCG-CAAAGTTCGGAAGTTT-ATCCAAGAATCAAG
642 AAGTTCGTC-AAGTTCAGAA-TTTCATCCAAGAAGCAAG
61484 AGGGACACAA
Statistics
Matches: 581, Mismatches: 87, Indels: 21
0.84 0.13 0.03
Matches are distributed among these distances:
720 208 0.36
721 366 0.63
722 7 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.28
Consensus pattern (720 bp):
GACAAGTTAGGAAGTTCGTCCAAGAACCAAGACAGACACAATTCTCACGTAAATAAGTTCTTAAT
TCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTACACCAAATGATACGATTTCTCGAGA
ATGGATTGTTCGAAAAACTGCTAGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGCTA
TAAAAGAACTCGTAAAAGTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAAATTTTAATTCGAAGATCAAAACTTATTTACAAAATGACAAACTATTTAGACCA
AATAATGCGATTTCCCTCGCATGGAATGTTCACAAAATTACCCGAGAGAATGGATCGTCTTGAAC
AATCTAAGGAAACAAAGATAGAAAAGAACTCGTAAAAGTTTTACAAGTTCAGAAGTTCGTCCAAC
AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACGA
AATGAAAAACTATTTAGACCAAATGATACGACTTCCCTAAAATAGAATGTTAGCAAAATTACTCG
AAGGAATGGACCGTCTTGAACACTTTAAGGAACAGAAGCTATAAAAGAACTCATAAAAGTTCGTC
AAGTTCAGAATTTCATCCAAGAAGCAAGGGAGAAATAATTTCGAAGTTATAAAAGAACCAGTAAT
AGTTC
Found at i:63055 original size:289 final size:289
Alignment explanation
Indices: 62527--63100 Score: 815
Period size: 289 Copynumber: 2.0 Consensus size: 289
62517 TAAGGAACCG
* *
62527 AAGTTATAAAAGAATCAGTAACAGTTCGATAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGACA
1 AAGTTATAAAAGAACCAGTAACAGTTCGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGACA
* * *
62592 CAATTTTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATT
66 CAATTCTCACGAAAATAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATT
* * * * *
62657 TAGGCCAAATGATACGTTTTCTCGAGACTAAATTGTTCGAAAAACTGCTAGAAAGAATGGATCGT
131 TAGACCAAATGATACGATTTCCCGAGAATAAATTGTTCGAAAAACTGCTAGAAAGAATGGACCGT
* * * * * * * * * *
62722 CTTGAATACTTTAATGAACTGAAGCTACAGACGAACTTGTAAAAGTTTGTCAATTTCAGTATTTC
196 CTTGAATACTTTAAGGAACCGAAGCTACAAAAGAACTCGTAAAAGTTCGACAAGTTCAGAAGTTC
*
62787 GTCCAAGAACCAAGAGAGAAATAATACCA
261 GTCCAAGAACAAAGAGAGAAATAATACCA
* * *
62816 AAGTTATAAAAGAACCAGTAACAGTTCGGCAAGTTCGGAAGTTCATCCACGAACCAAGAGAGACA
1 AAGTTATAAAAGAACCAGTAACAGTTCGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGACA
62881 CAATTCTCACGAAAATAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATT
66 CAATTCTCACGAAAATAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATT
* * ** * * *
62946 TAGACTAAATGATATGATTTCCCGAGAATGGATTGTTCGGAAAACTGCTCGAAGGAATGGACCGT
131 TAGACCAAATGATACGATTTCCCGAGAATAAATTGTTCGAAAAACTGCTAGAAAGAATGGACCGT
* * * * *
63011 CTTGATTACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGGAAGTTC
196 CTTGAATACTTTAAGGAACCGAAGCTACAAAAGAACTCGTAAAAGTTCGACAAGTTCAGAAGTTC
*
63076 GTCCAAGAACAAAGAGAGACATAAT
261 GTCCAAGAACAAAGAGAGAAATAAT
63101 TCTCATGTAA
Statistics
Matches: 248, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
289 248 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (289 bp):
AAGTTATAAAAGAACCAGTAACAGTTCGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGACA
CAATTCTCACGAAAATAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATT
TAGACCAAATGATACGATTTCCCGAGAATAAATTGTTCGAAAAACTGCTAGAAAGAATGGACCGT
CTTGAATACTTTAAGGAACCGAAGCTACAAAAGAACTCGTAAAAGTTCGACAAGTTCAGAAGTTC
GTCCAAGAACAAAGAGAGAAATAATACCA
Found at i:63222 original size:216 final size:216
Alignment explanation
Indices: 62820--63489 Score: 826
Period size: 216 Copynumber: 3.1 Consensus size: 216
62810 ATACCAAAGT
* * * *
62820 TATAAAAGAAC-CAGTAACAGTTCGGCAAGTTCGGAAGTTCATCCACGAACCAAGAGAGACACAA
1 TATAAAAGAACTC-GTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAA
* * *
62884 TTCTCACGAAAATAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATTTAG
65 TTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* ** ** * * * * * *
62949 ACTAAATGATATGATTTCCCGAGAATGGATTGTTCGGAAAACTGCTCGAAGGAATGGACCGTCTT
130 ACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGCAAAATTACTCGAAGGAATGGATCGTCTT
** * * *
63014 GATTACTTTAAGGAACCGAAGT
195 GAACACTTTAATGAACAGAAGC
* * *
63036 TATAAAAGAACTCGTAAAAGTTCGACTAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGACATAAT
1 TATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAAT
** * *
63101 TCTCATGTAAATAAAATTTTAATTCAAAGATCAAAATTTGTTTACAAAATGAGAAACTATTTAGA
66 TCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
* * *
63166 CCAAATAATGCGATTTCTCTCGCATGAAATGTTCGCAAAATTACTCG-AGAGAATGGATCGTCTT
131 CCAAATGATGCGATTTCCCTCGCATGGAATGTTCGCAAAATTACTCGAAG-GAATGGATCGTCTT
* * *
63230 GAACCCTTTAATTAA-ATGAGGC
195 GAACACTTTAATGAACA-GAAGC
* *** * * * *
63252 TATAAACA-AACTTGTAAAAGTTTTTCAATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAA
1 TATAAA-AGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAA
* * *
63316 TTCTCATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGTTTACGAAATGAAAAACTATTTAG
65 TTCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* *
63381 ACCAAATGATGCGATTTCCCTCACATGGAATGTTCGTAAAATTACTCGAAGGAATGGATCGTCTT
130 ACCAAATGATGCGATTTCCCTCGCATGGAATGTTCGCAAAATTACTCGAAGGAATGGATCGTCTT
*
63446 GAACACTTTAATGAACATAAGC
195 GAACACTTTAATGAACAGAAGC
63468 TATAAAAGAACTCGTAAAAGTT
1 TATAAAAGAACTCGTAAAAGTT
63490 TGTCAATTTT
Statistics
Matches: 383, Mismatches: 64, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
215 3 0.01
216 375 0.98
217 5 0.01
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (216 bp):
TATAAAAGAACTCGTAAAAGTTCGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGACACAAT
TCTCATGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
CCAAATGATGCGATTTCCCTCGCATGGAATGTTCGCAAAATTACTCGAAGGAATGGATCGTCTTG
AACACTTTAATGAACAGAAGC
Found at i:63541 original size:505 final size:504
Alignment explanation
Indices: 63030--63996 Score: 1408
Period size: 505 Copynumber: 1.9 Consensus size: 504
63020 TTTAAGGAAC
* * *
63030 CGAAGTTATAAAAGAACTC-GTAAAAGTTCGACTAGTTCGGAAGTTCGTCCAAGAACAAAGAGAG
1 CGAAGTTATAAAAGAAC-CAGTAAAAGTTCGACAAGTTCGGAAATTCATCCAAGAACAAAGAGAG
* * * *
63094 ACATAATTCTCATGTAAATAAAATTTTAATTCAAAGATCAAAATTTGTTTACAAAATGAGAAACT
65 ACACAATTCTCACGTAAATAAAATTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACT
* * * *
63159 ATTTAGACCAAATAATGCGATTTCTCTCG-C-ATGAAATGTTCGCAAAATTACTCG-AGAGAATG
130 ATTTAGACCAAATAATACGA-TT-TCTCGACAATGAAATGTTCGAAAAACTACTAGAAG-GAATG
* * * * * * * *
63221 GATCGTCTTGAACCCTTTAATTAAATGAGGCTATAAACA-AACTTGTAAAAGTTTTTCAATTTCA
192 AATCATCTTGAACACTTTAATGAAATGAAGCTATAAA-AGAAATCGTAAAAGTTTGTCAATTTCA
* *
63285 GAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCGAAGATAA
256 GAATTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAA
*
63350 AAACTTGTTTACGAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCA-CATGGAATGT
321 AAACTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTT-CCT-AGCATGGAATGT
* * * * *
63414 T-CGTAAAATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAACATAAGCTATAAAAGAA
384 TCCG-AAAATTACTCGAAGGAATGGATCGTCTTGAACACTCTAAGGAACAGAAGATAGAAAAGAA
63478 CTCGTAAAAGTTTGTCAATTTTAGAATTTCATCCAAGAAGTAAGGGAGAAACAATTT
448 CTCGTAAAAGTTTGTCAATTTTAGAATTTCATCCAAGAAGTAAGGGAGAAACAATTT
* *
63535 CGAAGTTATAAAAGAACCAGTAACAGTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGA
1 CGAAGTTATAAAAGAACCAGTAAAAGTTCGACAAGTTCGGAAATTCATCCAAGAACAAAGAGAGA
** *
63600 CACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATGAAAAACTA
66 CACAATTCTCACGTAAATAAAATTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
* * * *
63665 TTTAGACCAAATCATACGATTTCTCGACAATGGACTGTTCGAAAAACTGCTAGAAGGAATGAATC
131 TTTAGACCAAATAATACGATTTCTCGACAATGAAATGTTCGAAAAACTACTAGAAGGAATGAATC
* * *
63730 ATCTTGAATACTTTAATGAACTGAAGTTATAAAAGAAATCGTAAAAGTTTGTCAATTTCAGAATT
196 ATCTTGAACACTTTAATGAAATGAAGCTATAAAAGAAATCGTAAAAGTTTGTCAATTTCAGAATT
* **
63795 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAATTT
261 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAAAAACT
63860 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCTATGCATGGAATGTTCCGAA
326 TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCTA-GCATGGAATGTTCCGAA
* *
63925 AATTACTCGAAGGAATGGATCGTCTTGAACACTCTAAGGAACCGAATATAGAAAAGAACTCGTAA
390 AATTACTCGAAGGAATGGATCGTCTTGAACACTCTAAGGAACAGAAGATAGAAAAGAACTCGTAA
63990 AAGTTTG
455 AAGTTTG
63997 ACAAGTTTGA
Statistics
Matches: 410, Mismatches: 44, Indels: 16
0.87 0.09 0.03
Matches are distributed among these distances:
503 6 0.01
504 8 0.02
505 392 0.96
506 4 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (504 bp):
CGAAGTTATAAAAGAACCAGTAAAAGTTCGACAAGTTCGGAAATTCATCCAAGAACAAAGAGAGA
CACAATTCTCACGTAAATAAAATTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTA
TTTAGACCAAATAATACGATTTCTCGACAATGAAATGTTCGAAAAACTACTAGAAGGAATGAATC
ATCTTGAACACTTTAATGAAATGAAGCTATAAAAGAAATCGTAAAAGTTTGTCAATTTCAGAATT
TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAAAAACT
TGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCTAGCATGGAATGTTCCGAAA
ATTACTCGAAGGAATGGATCGTCTTGAACACTCTAAGGAACAGAAGATAGAAAAGAACTCGTAAA
AGTTTGTCAATTTTAGAATTTCATCCAAGAAGTAAGGGAGAAACAATTT
Found at i:63818 original size:289 final size:288
Alignment explanation
Indices: 63293--63822 Score: 805
Period size: 289 Copynumber: 1.8 Consensus size: 288
63283 CAGAATTTCG
* *
63293 TCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCGAAGATAAAAACTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAAAAACTTGT
* * * *
63358 TTACGAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCACATGGAATGTTCGTAAAAT
66 TTACGAAATGAAAAACTATTTAGACCAAATCATACGATTT-CCTCACATGGAATGTTCGAAAAAC
* * * *
63423 TACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAACATAAGCTATAAAAGAACTCGTAAAAG
130 TACTAGAAGGAATGAATCATCTTGAACACTTTAATGAACATAAGCTATAAAAGAAATCGTAAAAG
* ** *
63488 TTTGTCAATTTTAGAATTTCATCCAAGAAGTAAGGGAGAAACAATTTCGAAGTTATAAAAGAACC
195 TTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATTTCGAAGTTATAAAAGAACC
63553 AGTAACAGTTCGACAAGTTCGGAAATTCA
260 AGTAACAGTTCGACAAGTTCGGAAATTCA
* *
63582 TCCAAGAACCAAGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGT
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAAAAACTTGT
*
63647 TTA-GAAAATGAAAAACTATTTAGACCAAATCATACGATTT-CTCGACAATGGACTGTTCGAAAA
66 TTACG-AAATGAAAAACTATTTAGACCAAATCATACGATTTCCTC-AC-ATGGAATGTTCGAAAA
* * *
63710 ACTGCTAGAAGGAATGAATCATCTTGAATACTTTAATGAAC-TGAAGTTATAAAAGAAATCGTAA
128 ACTACTAGAAGGAATGAATCATCTTGAACACTTTAATGAACAT-AAGCTATAAAAGAAATCGTAA
*
63774 AAGTTTGTCAATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAATT
192 AAGTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATT
63823 CTCACGTAAA
Statistics
Matches: 216, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
287 3 0.01
288 4 0.02
289 209 0.97
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (288 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATAAAAACTTGT
TTACGAAATGAAAAACTATTTAGACCAAATCATACGATTTCCTCACATGGAATGTTCGAAAAACT
ACTAGAAGGAATGAATCATCTTGAACACTTTAATGAACATAAGCTATAAAAGAAATCGTAAAAGT
TTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATTTCGAAGTTATAAAAGAACCA
GTAACAGTTCGACAAGTTCGGAAATTCA
Found at i:63881 original size:721 final size:718
Alignment explanation
Indices: 62446--64247 Score: 2199
Period size: 721 Copynumber: 2.5 Consensus size: 718
62436 AACATGTTTA
* * * * * * * * * * *
62446 CAAATGATGCGAGTTCCCAAGCATGTAGTGTTCGGAAAATTGCTTGAAGGATTGGATCGCCTTGA
1 CAAATAATGCGATTTCCTACGCATGAAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTGA
* * * * * * * *
62511 ATACTTTAAGGAACCGAAGT-TATAAAAGAA-TCAGTAACAGTTCGATAAG-TTCAGAAGTTCAT
66 ACACTCTAAGGAAACGAA-TATAGAAAAGAACTC-GTAAAAGTTTGACAAGTTTCAGAAGTTCGT
* * *
62573 CCAAGAACCAAGAGAGACACAATTTTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTT
129 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGATCAAAACTTGTT
* * *
62638 TACAAAATGAAAAACTATTTAGGCCAAATGATACG-TTT-TCTCGAGACTAAATTGTTCGAAAAA
194 TAC-AAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTC-A-AATAAA-TGTTCG-AAAA
* * * * * * *
62701 CTGCTAGAAAGAATGGATCGTCTTGAATACTTTAATGAACTGAAGCTACAGACGAACTTGTAAAA
254 TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAATGAACT-AAGCTATAAAAGAACTCGTAAAA
* * *
62766 GTTTGTCAATTTCAGTATTTCGTCCAAGAACCAAGAGAGAAATAATACCAAAGTTATAAAAGAAC
318 GTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATACCAAAGTTATAAAAGAAC
* * *
62831 CAGTAACAGTTCGGCAAGTTCGGAAGTTCATCCACGAACCAAGAGAGACACAATTCTCACGAAAA
383 CAGTAACAGTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGACACAATTCTCACGAAAA
* * *
62896 TAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATTTAGACTAAATGATAT
448 TAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATTTAGACCAAATCATAC
* * * * * * *
62961 GATTTCCCGAGAATGGATTGTTCGGAAAACTGCTCGAAGGAATGGACCGTCTTGATTACTTTAAG
513 GATTTCCCGACAATGGACTGTTCGAAAAACTGCTAGAAGGAATGAACCATCTTGAATACTTTAAG
* * *
63026 GAACCGAAGTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGGAAGTTCGTCCAAGAACAAAGA
578 GAACCGAAGTTATAAAAGAAATCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACAAAGA
* * * *
63091 GAGACATAATTCTCATGTAAATAAAATTTTAATTCAAAGATCAAAATTTGTTTACAAAATGAGAA
643 GAGAAACAATTCTCACGTAAATAAAATTTTAATTCAAAGATCAAAATTTGTTTACAAAATGAAAA
63156 ACTATTTAGAC
708 ACTATTTAGAC
63167 CAAATAATGCGATTTCTCT-CGCATGAAATGTT-CGCAAAATTACTCG-AGAGAATGGATCGTCT
1 CAAATAATGCGATTTC-CTACGCATGAAATGTTCCG-AAAATTACTCGAAG-GAATGGATCGTCT
* * ** * * * * ** *
63229 TGAACCCTTTAATTAAATGAGGCTATA-AACA-AACTTGTAAAAGTTTTTCAA-TTTCAGAATTT
63 TGAACACTCTAAGGAAACGA--ATATAGAAAAGAACTCGTAAAAGTTTGACAAGTTTCAGAAGTT
* *
63291 CGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCGAAGATAAAAACTT
126 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGATCAAAACTT
* * *
63356 GTTTACGAAATGAAAAACTATTTAGACCAAATGATGCGATTTCCCTCACATGGAATGTTCGTAAA
191 GTTTAC-AAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCAAAT-AAATGTTCG-AAA
* *
63421 ATTACTCGAAGGAATGGATCGTCTTGAACACTTTAATGAACATAAGCTATAAAAGAACTCGTAAA
253 ATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAATGAAC-TAAGCTATAAAAGAACTCGTAAA
* ** * ** *
63486 AGTTTGTCAATTTTAGAATTTCATCCAAGAAGTAAGGGAGAAACAATTTCGAAGTTATAAAAGAA
317 AGTTTGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATACCAAAGTTATAAAAGAA
*
63551 CCAGTAACAGTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGACACAATTCTCACGTAA
382 CCAGTAACAGTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGACACAATTCTCACGAAA
* *
63616 ATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATGAAAAACTATTTAGACCAAATCATA
447 ATAAGTTTTTAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATTTAGACCAAATCATA
* *
63681 CGATTTCTCGACAATGGACTGTTCGAAAAACTGCTAGAAGGAATGAATCATCTTGAATACTTTAA
512 CGATTTCCCGACAATGGACTGTTCGAAAAACTGCTAGAAGGAATGAACCATCTTGAATACTTTAA
* * * * * * *
63746 TGAACTGAAGTTATAAAAGAAATCGTAAAAGTTTGTCAATTTCAGAATTTCGTCCAAGAACCAAG
577 GGAACCGAAGTTATAAAAGAAATCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACAAAG
** *
63811 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAATTTTGTTTACAAAATGAAA
642 AGAGAAACAATTCTCACGTAAATAAAATTTTAATTCAAAGATCAAAATTTGTTTACAAAATGAAA
63876 AACTATTTAGAC
707 AACTATTTAGAC
* * *
63888 CAAATGATGCGATTTCCTATGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTGA
1 CAAATAATGCGATTTCCTACGCATGAAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTGA
* *
63953 ACACTCTAAGGAACCGAATATAGAAAAGAACTCGTAAAAGTTTGACAAGTTTGA-AAGTTCGTCC
66 ACACTCTAAGGAAACGAATATAGAAAAGAACTCGTAAAAGTTTGACAAGTTTCAGAAGTTCGTCC
* * * **
64017 AACAACAAAAAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGGCCAAAACTTGTTTA
131 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGATCAAAACTTGTTTA
** * * * *
64082 CAAAGTGAAAATTTTTTTAGACCAAATGCTACGACTTCCC-AAGAATATAATGTTCAGAAAATTG
196 CAAA-TGAAAAACTATTTAGACCAAATGATACGATTTCCCTCA-AATA-AATGTTC-GAAAATTG
* * * * * * *
64146 CTCGAAGGATTGGACCGTCTTGATTACTTTAAGGAACCGAATCTATAAAATAACTCGTAAAAGTT
257 CTCGAAGGAATGGATCGTCTTGAATACTTTAATGAA-CTAAGCTATAAAAGAACTCGTAAAAGTT
* * * * * *
64211 CGACAAGTTCCGAAGTTCGTCCAAGAACCAAGAGAGA
321 TGTCAATTTCAGAATTTCATCCAAGAACCAAGAGAGA
64248 CACTTTAATG
Statistics
Matches: 913, Mismatches: 145, Indels: 46
0.83 0.13 0.04
Matches are distributed among these distances:
719 4 0.00
720 12 0.01
721 869 0.95
722 23 0.03
723 5 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (718 bp):
CAAATAATGCGATTTCCTACGCATGAAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTGA
ACACTCTAAGGAAACGAATATAGAAAAGAACTCGTAAAAGTTTGACAAGTTTCAGAAGTTCGTCC
AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCGAAGATCAAAACTTGTTTA
CAAATGAAAAACTATTTAGACCAAATGATACGATTTCCCTCAAATAAATGTTCGAAAATTGCTCG
AAGGAATGGATCGTCTTGAATACTTTAATGAACTAAGCTATAAAAGAACTCGTAAAAGTTTGTCA
ATTTCAGAATTTCATCCAAGAACCAAGAGAGAAACAATACCAAAGTTATAAAAGAACCAGTAACA
GTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGACACAATTCTCACGAAAATAAGTTTT
TAATTCAAAGATCAAAACTTCTTTACAAAATGAAAAACTATTTAGACCAAATCATACGATTTCCC
GACAATGGACTGTTCGAAAAACTGCTAGAAGGAATGAACCATCTTGAATACTTTAAGGAACCGAA
GTTATAAAAGAAATCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACA
ATTCTCACGTAAATAAAATTTTAATTCAAAGATCAAAATTTGTTTACAAAATGAAAAACTATTTA
GAC
Found at i:63939 original size:216 final size:216
Alignment explanation
Indices: 63541--64247 Score: 823
Period size: 216 Copynumber: 3.3 Consensus size: 216
63531 ATTTCGAAGT
* * * * * *
63541 TATAAAAG-AACCAGTAACAGTTCGACAAGTTCGGAAATTCATCCAAGAACCAAGAGAGACACAA
1 TATAAAAGAAATC-GTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
*
63605 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTAGAAAATGAAAAACTATTTAG
65 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* * * * * * *
63670 ACCAAATCATACGATTT-CT-CGACAATGGACTGTT-CGAAAAACTGCTAGAAGGAATGAATCAT
130 ACCAAATGATACGATTTCCTAAG-C-ATGGAATGTTCCG-AAAATTGCTCGAAGGAATGGATCGT
* *
63732 CTTGAATACTTTAATGAACTGAAGT-
192 CTTGAATACTTTAAGGAACCGAA-TA
* * * *
63757 TATAAAAGAAATCGTAAAAGTTTGTCAATTTCAGAATTTCGTCCAAGAACCAAGAGAGAAACAAT
1 TATAAAAGAAATCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
**
63822 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAATTTTGTTTACAAAATGAAAAACTATTTAGA
66 TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
* * *
63887 CCAAATGATGCGATTTCCTATGCATGGAATGTTCCGAAAATTACTCGAAGGAATGGATCGTCTTG
131 CCAAATGATACGATTTCCTAAGCATGGAATGTTCCGAAAATTGCTCGAAGGAATGGATCGTCTTG
* *
63952 AACACTCTAAGGAACCGAATA
196 AATACTTTAAGGAACCGAATA
* * * * * * *
63973 TAGAAAAGAACTCGTAAAAGTTTGACAAGTT-TGAAAGTTCGTCCAACAACAAAAAGAGAAACAA
1 TATAAAAGAAATCGTAAAAGTTCGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAA
* ** * ** *
64037 TTCTCACGTAAATAAGTTTTTAATTCGAAGGCCAAAACTTGTTTACAAAGTGAAAATTTTTTTAG
65 TTCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAG
* * * * ** * * *
64102 ACCAAATGCTACGACTTCCCAAGAATATAATGTTCAGAAAATTGCTCGAAGGATTGGACCGTCTT
130 ACCAAATGATACGATTTCCTAAGCATGGAATGTTCCGAAAATTGCTCGAAGGAATGGATCGTCTT
* *
64167 GATTACTTTAAGGAACCGAATC
195 GAATACTTTAAGGAACCGAATA
* * *
64189 TATAAAATAACTCGTAAAAGTTCGACAAGTTCCGAAGTTCGTCCAAGAACCAAGAGAGA
1 TATAAAAGAAATCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
64248 CACTTTAATG
Statistics
Matches: 418, Mismatches: 66, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
215 2 0.00
216 406 0.97
217 9 0.02
218 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (216 bp):
TATAAAAGAAATCGTAAAAGTTCGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTAATTCAAAGATCAAAACTTGTTTACAAAATGAAAAACTATTTAGA
CCAAATGATACGATTTCCTAAGCATGGAATGTTCCGAAAATTGCTCGAAGGAATGGATCGTCTTG
AATACTTTAAGGAACCGAATA
Done.