Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01013007.1 Kokia drynarioides strain JFW-HI SEQ_128025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3676
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:2600 original size:38 final size:38

Alignment explanation


    Indices: 2558--2644  Score: 129
    Period size: 38  Copynumber: 2.3  Consensus size: 38

       2548 TTGGTACTAA

                                 *            *   
       2558 TGTCGTTGCATGAGTATTTTCTAATTTGCTTCCAGGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGCTTCCAAGAT

                 *                         *      
       2596 TGTCGCTGCATGAGTATTTTCAAATTTGCTTTCAAGAT
          1 TGTCGTTGCATGAGTATTTTCAAATTTGCTTCCAAGAT

                  *    
       2634 TGTCGTCGCAT
          1 TGTCGTTGCAT

       2645 CTGAAAACTG


Statistics
Matches: 43,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  38   43  1.00

ACGTcount: A:0.20, C:0.17, G:0.21, T:0.43


Consensus pattern (38 bp):   
TGTCGTTGCATGAGTATTTTCAAATTTGCTTCCAAGAT
Done.